Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008409

Physical Location & Seq

Genomic Coordinates Reverse (-)

54223864 .. 54232349

Gene Structure 8486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014517

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3090 bp

ATGAAGAGGGCGATAAGGACCGTAGAGGATCTGATCAAGGAGGTTCAGCTTCGATTCGTTTGGTGGGCGCTGTTTGTCTTCGCTGTTTCCTACTTCTTGACGCATACAAGCAAATCAATGTGGATGAATCTGCCGATAGCAATCTTACTTGTCGCGGTATTACGCATGCTATTAAATGAGGTGGAATTTCACTGGAAGGTTCATAAGCCTGTTCGTCCGAAATCATATTTGTCTCATTTGGAGAAGAAACAGTTGTCTGTGAACGACTCACGCCTTTCTACTTCATTGCCACCACCGAAATGGAAAAGGAAAATTGGTTCTCCGATCGTAGAGGATGCAATGAGAGATTTCATTGACAAAATTTTGAAGGATTTTGTGATTGATTTATGGTATTCGGATATAACACCGGACAAGGAGGCTCCGGAGCAGATACGCGCAATTATCATGGATGCTCTTGGTGAAGTATCAGGAAGAGCTAAAGAGATAAACCTTGTTGATTTGCTAACAAGGGATATAATAGATTTAATAGCGGAACATTTAGAGCTTTTCAGAAGAAACCAAGCTGCTATTGGTGTTGATGTTATGAAAACATTGTCTTCAGAGGAGAGAGATGAAAGGTTGAAACATCATCTTATGACTTCAAAGGAGCTCCATCCTGCGTTGATATCACCTGAGAGTGAGTACAAGTTTCTTCAGCGGGTAATGGGTGGAGTGATAGCGGTGGTGCTCAGACCACGAGAAGCTCAATGTCCAGTGGTTCGATCCATTGCCAGAGAACTATTAACAAGCTTGGTAATTGAACCTGTTATGAATTTCGCAAGCCCTGGGTACATCAATGAGTTGATTGAATATGTTTTGGAAATTGTTAAAGATTATATCTTTAAAGAGGCAGATGGGGACCAGTCTACTGCAGGGGGCGTACATGATCAAGATTCTCCGCTGAGGAAATATGCTACCTTTAATCAGAGGACTGATATGACCTTGGCTAAAATTGAAAATCAGGGAGAAGCATCCTCGGACTATAACACATTCCAGGAAGATCCTTTGCAGTCGCAGCCTGCTGTTTGGGCACGAGGGTTGGAGGCTGCGACACAGAGAAGGACTGAAGTTCTTACTCCTGAAAATCTAGAAAACATGTGGACAAAAGGAAGAAACTATAAAAAGAAAGAACACAAGAGAAAAATAGCAGGAGTTCAGGAACCTGTACCAAAGGGTTCAGGAGCGCATAGTGCTGTACCTGCAAAAAAGTTGGGGAATGAAATGCTAGCTAACAGGCATGATATTTCTACAGGAGAGGAAGATAGATCTATTGTAAATCTAACCCAGGGGGCAAGTTTTGACACCCATTTTAGTGATTCGACTAAAAAGGAGTTGCGGTTCTCTTCAGATGTCAACAAGGAATCAATTTCTAAGGAAGGGCATCTTGTTGATGAGTCGGATGACGATAGAGATCTTGCTGCTAATGGAGTTAAAAGTAACCTTAAACGATCAAATAGCACTTCTGCTTTGAAAATCCAACCTGATGCAAAAAAAGCTTCGACACAAGGTGGAGGTTCCATCATTTCAGAGTTCTATAGTCCTGAATTTGGCAGGCATGTAGAAGGGCATATCGGTAAGAGTGCCTCAGATATGGTAGTCCGCAGTGTGGGACAAGTTCCCAAGCTCAGGTGCCGGGTTATGGGAGCATACTTTGAGAAACTTGGGTCAAAATCTTTTGCAGTTTATTCAATTGCAGTGACAGATGCAGAAAACAGAACTTGGTTTGTGAAACGAAGATATAGGAATTTTGAGCGACTACACCGCCATCTCAAAGAAATTCCAAATTACACCTTACATTTGCCCCCCAAAAGGATTTTCTCATCAAGCACAGAGGATGCTTTTGTTCATCAGCGATGTATCCAGCTTGACAGATATCTCCAGGATCTTTTGTCAATAGCGAACGTTGCTGAACAGCATGAAGTTTGGGATTTTTTAAGTGCTACCTCGAAGAATTACTCATTTGGAAAATCTCCCTCAGTGATGAGAACTCTTGCAGTGAATGTGGATGATGCTGTGGACGATATTGTTCGCCAGTTCAAAGGGGTTTCAGATGGCTTAATGCGTGCCGTTGTTGGTCCATCCACTTCTGAGGGCTCATCTTCAATTCCTGTGTTGAACTTGTCCTGGAATGCCGAAGAGACAAGTGAAAATGTTTCTAGGCAAAATACAGGGGAAACACTGAGTAGCTTTTCTGATAATGAGCCTGCCGAAAATGATCAAAGTTGTGACCCTGTGGAAGTCAGATCTAATGTGCAGGATAGTGGGTGGCATTCAGACAATGAATTGGACTTTAAGGGCGGACAACCTTGGATTAAACATTCGAGAAGCTTAGGGTTGCAGAAGAAAGTGGATGTGGAATCTGGGGGTGGCAATGATGTCTTTCCTAGAGCAATTGGTCCAGTAACCTTCAATCCTTTGGAACTGGAGGATCCAGTTGGAATGCCACCTGAGTGGACTCCACCCAATGTTAGTGTACCTCTGTTGAATCTAGTGGACAAGGTATTTCAGCTTAAGAGAAGGGGATGGCTAAGAAGACAAGTGTTTTGGATGTCAAAACAAATACTACAGTTGATGATGGAAGACGCTATCGATGACTGGCTCTTGAGGCATATTCAATTGCTTCGGAGGGAGGATATTATAGCTTCAGGAATTCGATGGCTTCAAGATGTTCTATGGCCCAATGGCACATTCTTCCTTAAGGTTGGTAATGCTAAAGACGATCAAAACTCTCTTCCAACTACAAACCAATTTGGTGGCAGTAAGGTTGGTAAACCGGGTTCTTTTGAGCAGCAGCTTGAGGCTGCTCGGAGAGCTAGTGATCTGAAGAAACTGCTCTTTGATGGAGCTCCAACAGCCTTAGTCAGCTTAGTCGGACATAAGCAGTACAGACGTTGTGCAAGAGATATTTATTATTTCACTCAGTCTACTATATGCGTGAAGCAACTTGCATATGCGATACTTGAGTTATGTCTTGTGTCAATATTCCCTGAGCTACGGGATCTTATTGTTGATATTCACGAGAAGACGCACATCGATCAAACTGTACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0006605 GO:0006622 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0007041 GO:0008104 GO:0008150 GO:0008289 GO:0008333 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016482 GO:0019898 GO:0031090 GO:0031312 GO:0031313 GO:0031410 GO:0031982 GO:0033036 GO:0033365 GO:0034613 GO:0035091 GO:0042802 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061462 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098805 GO:0098927

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nexin_C PX PXA

Protein Analysis

1030

Amino Acids

116.51

Weight (kDa)

6.65

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PXA	PF02194	107 - 285	4e-42	PXA domain
PX	PF00787	583 - 659	1.4e-13	PX domain
Nexin_C	PF08628	855 - 988	4.7e-24	Sorting nexin C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15900
fragaria_vesca	FvH4_2g07180 FvH4_2g07180 FvH4_2g07180 FvH4_2g07180 FvH4_2g07180 FvH4_2g07180
malus_domestica	MD05G1073000.v1.1 MD10G1087600.v1.1
prunus_persica	Prupe.8G113600_v2.0.a1 Prupe.8G113600_v2.0.a1
pyrus_communis	pycom05g06550 pycom10g06990
rosa_chinensis	RchiOBHm_Chr6g0259621
rosa_laevigata	RLG00000014517
rosa_multiflora	Rmu_sc0000536.1_g000017
rosa_roxburghii	Rroxscaffold_7G00206920
rosa_rugosa	Rorug05G0590000
rosa_samantha	Rh6AG106200 Rh6BG100700 Rh6CG095300 Rh6DG089200
rosa_wichuraiana	Rw6G009180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1246
AccB1I	GGYRCC	1 cut(s)	1668
AccI	GTMKAC	2 cut(s)	905, 2963
AccII	CGCG	2 cut(s)	155, 435
AccIII	TCCGGA	1 cut(s)	421
AciI	CCGC	9 cut(s)	155, 530, 697, 719, 938, 1375, 1639, 1801, 2337
AclI	AACGTT	1 cut(s)	1941
AclWI	GGATC	7 cut(s)	36, 756, 1034, 1929, 2462, 2475, 3045
AcsI	RAATTY	7 cut(s)	185, 360, 811, 1583, 1783, 1815, 2688
AcuI	CTGAAG	6 cut(s)	582, 677, 1125, 1368, 2667, 2882
AdeI	CACNNNGTG	1 cut(s)	1547
AfaI	GTAC	8 cut(s)	683, 830, 921, 1206, 1236, 2514, 2924, 3084
AfiI	CCNNNNNNNGG	5 cut(s)	1586, 1645, 1665, 1678, 1848
AflII	CTTAAG	2 cut(s)	2549, 2735
AflIII	ACRYGT	1 cut(s)	1134
AjnI	CCWGG	5 cut(s)	823, 1032, 1323, 1917, 2162
AjuI	GAANNNNNNNTTGG	4 cut(s)	1838, 1870, 2711, 2743
AleI	CACNNNNGTG	1 cut(s)	2488
AloI	GAACNNNNNNTCC	4 cut(s)	301, 333, 1361, 1393
Alw21I	GWGCWC	3 cut(s)	651, 729, 2887
Alw26I	GTCTC	2 cut(s)	237, 2171
AlwI	GGATC	7 cut(s)	36, 756, 1034, 1929, 2462, 2475, 3045
Aor13HI	TCCGGA	1 cut(s)	421
AoxI	GGCC	1 cut(s)	2714
ApeKI	GCWGC	7 cut(s)	563, 1054, 1085, 1457, 2827, 2830, 2840
ApoI	RAATTY	7 cut(s)	185, 360, 811, 1583, 1783, 1815, 2688
ArsI	GACNNNNNNTTYG	2 cut(s)	2565, 2597
AspLEI	GCGC	3 cut(s)	70, 437, 1225
AspS9I	GGNCC	5 cut(s)	18, 898, 2114, 2435, 2715
AsuC2I	CCSGG	2 cut(s)	1673, 2814
AsuHPI	GGTGA	2 cut(s)	470, 660
AsuNHI	GCTAGC	1 cut(s)	1264
AvaII	GGWCC	4 cut(s)	18, 898, 2114, 2435
BaeGI	GKGCMC	1 cut(s)	1072
BaeI	ACNNNNGTAYC	2 cut(s)	2987, 3020
BamHI	GGATCC	1 cut(s)	2467
BanI	GGYRCC	1 cut(s)	1668
BanII	GRGCYC	3 cut(s)	651, 2135, 2887
BauI	CACGAG	3 cut(s)	735, 1071, 3056
BbsI	GAAGAC	5 cut(s)	70, 588, 2578, 2625, 3068
Bbv12I	GWGCWC	3 cut(s)	651, 729, 2887
BbvCI	CCTCAGC	1 cut(s)	941
BbvI	GCAGC	7 cut(s)	550, 1066, 1072, 1444, 2827, 2839, 2842
BceAI	ACGGC	1 cut(s)	2090
BciT130I	CCWGG	5 cut(s)	825, 1034, 1325, 1919, 2164
BciVI	GTATCC	1 cut(s)	1907
BclI	TGATCA	3 cut(s)	33, 925, 2254
BcnI	CCSGG	2 cut(s)	1673, 2814
BcoDI	GTCTC	2 cut(s)	237, 2171
BfaI	CTAG	6 cut(s)	1127, 1265, 2196, 2424, 2528, 2853
BfmI	CTRYAG	4 cut(s)	909, 1287, 1573, 2603
BfoI	RGCGCY	1 cut(s)	71
BfrI	CTTAAG	2 cut(s)	2549, 2735
BfuAI	ACCTGC	1 cut(s)	1246
BfuI	GTATCC	1 cut(s)	1907
BglII	AGATCT	3 cut(s)	1304, 1450, 2282
BisI	GCNGC	7 cut(s)	564, 1055, 1086, 1458, 2828, 2831, 2841
BlsI	GCNGC	7 cut(s)	565, 1056, 1087, 1459, 2829, 2832, 2842
Bme1390I	CCNGG	7 cut(s)	825, 1034, 1325, 1673, 1919, 2164, 2814
Bme18I	GGWCC	4 cut(s)	18, 898, 2114, 2435
BmgT120I	GGNCC	5 cut(s)	18, 898, 2114, 2435, 2715
BmiI	GGNNCC	6 cut(s)	420, 899, 1200, 1555, 1670, 2469
BmrFI	CCNGG	7 cut(s)	825, 1034, 1325, 1673, 1919, 2164, 2814
BmsI	GCATC	8 cut(s)	325, 439, 1019, 1429, 1513, 1732, 1864, 2038
BmtI	GCTAGC	1 cut(s)	1268
BpiI	GAAGAC	5 cut(s)	70, 588, 2578, 2625, 3068
BpmI	CTGGAG	2 cut(s)	1901, 2483
Bpu10I	CCTNAGC	4 cut(s)	941, 1664, 2368, 3027
BpuEI	CTTGAG	3 cut(s)	2662, 2855, 3020
BpuMI	CCSGG	2 cut(s)	1673, 2814
Bsa29I	ATCGAT	2 cut(s)	2628, 3072
BsaBI	GATNNNNATC	2 cut(s)	140, 1449
BsaJI	CCNNGG	7 cut(s)	823, 824, 981, 1014, 1323, 1324, 2345
BsaWI	WCCGGW	2 cut(s)	406, 421
BsaXI	ACNNNNNCTCC	4 cut(s)	1361, 1391, 2839, 2869
Bsc4I	CCNNNNNNNGG	5 cut(s)	1586, 1645, 1665, 1678, 1848
Bse1I	ACTGG	8 cut(s)	197, 752, 901, 2071, 2438, 2466, 2471, 2639
Bse3DI	GCAATG	4 cut(s)	284, 345, 765, 2416
Bse8I	GATNNNNATC	2 cut(s)	140, 1449
BseAI	TCCGGA	1 cut(s)	421
BseBI	CCWGG	5 cut(s)	825, 1034, 1325, 1919, 2164
BseCI	ATCGAT	2 cut(s)	2628, 3072
BseDI	CCNNGG	7 cut(s)	823, 824, 981, 1014, 1323, 1324, 2345
BseJI	GATNNNNATC	2 cut(s)	140, 1449
BseLI	CCNNNNNNNGG	5 cut(s)	1586, 1645, 1665, 1678, 1848
BseMI	GCAATG	4 cut(s)	284, 345, 765, 2416
BseNI	ACTGG	8 cut(s)	197, 752, 901, 2071, 2438, 2466, 2471, 2639
BseRI	GAGGAG	1 cut(s)	617
BseSI	GKGCMC	1 cut(s)	1072
BseXI	GCAGC	7 cut(s)	550, 1066, 1072, 1444, 2827, 2839, 2842
BsgI	GTGCAG	1 cut(s)	2312
Bsh1236I	CGCG	2 cut(s)	155, 435
Bsh1285I	CGRYCG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	2716
BshNI	GGYRCC	1 cut(s)	1668
BshVI	ATCGAT	2 cut(s)	2628, 3072
BsiEI	CGRYCG	1 cut(s)	327
BsiHKAI	GWGCWC	3 cut(s)	651, 729, 2887
BsiSI	CCGG	4 cut(s)	407, 422, 1672, 2813
BslFI	GGGAC	2 cut(s)	911, 1662
BslI	CCNNNNNNNGG	5 cut(s)	1586, 1645, 1665, 1678, 1848
BsmAI	GTCTC	2 cut(s)	237, 2171
BsmFI	GGGAC	2 cut(s)	911, 1662
BsmI	GAATGC	3 cut(s)	2173, 2308, 2484
BsnI	GGCC	1 cut(s)	2716
Bsp1286I	GDGCHC	5 cut(s)	651, 729, 1072, 2135, 2887
Bsp13I	TCCGGA	1 cut(s)	421
BspACI	CCGC	9 cut(s)	155, 530, 697, 719, 938, 1375, 1639, 1801, 2337
BspANI	GGCC	1 cut(s)	2716
BspDI	ATCGAT	2 cut(s)	2628, 3072
BspEI	TCCGGA	1 cut(s)	421
BspFNI	CGCG	2 cut(s)	155, 435
BspLI	GGNNCC	6 cut(s)	420, 899, 1200, 1555, 1670, 2469
BspMAI	CTGCAG	1 cut(s)	913
BspMI	ACCTGC	1 cut(s)	1246
BspOI	GCTAGC	1 cut(s)	1268
BspPI	GGATC	7 cut(s)	36, 756, 1034, 1929, 2462, 2475, 3045
BspQI	GCTCTTC	1 cut(s)	466
BspT107I	GGYRCC	1 cut(s)	1668
BspTI	CTTAAG	2 cut(s)	2549, 2735
BsrDI	GCAATG	4 cut(s)	284, 345, 765, 2416
BsrI	ACTGG	8 cut(s)	197, 752, 901, 2071, 2438, 2466, 2471, 2639
BssECI	CCNNGG	7 cut(s)	823, 824, 981, 1014, 1323, 1324, 2345
BssSI	CACGAG	3 cut(s)	735, 1071, 3056
BssT1I	CCWWGG	2 cut(s)	981, 2345
Bst2BI	CACGAG	3 cut(s)	735, 1071, 3056
Bst2UI	CCWGG	5 cut(s)	825, 1034, 1325, 1919, 2164
Bst4CI	ACNGT	5 cut(s)	22, 252, 2607, 3082, 3087
Bst6I	CTCTTC	4 cut(s)	466, 1387, 2169, 2775
BstAFI	CTTAAG	2 cut(s)	2549, 2735
BstC8I	GCNNGC	7 cut(s)	167, 820, 1059, 1266, 1592, 2103, 2244
BstFNI	CGCG	2 cut(s)	155, 435
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	3 cut(s)	70, 437, 1225
BstMAI	GTCTC	2 cut(s)	237, 2171
BstMCI	CGRYCG	1 cut(s)	327
BstMWI	GCNNNNNNNGC	9 cut(s)	1054, 1067, 1229, 1238, 1532, 1943, 2644, 2849, 2891
BstNI	CCWGG	5 cut(s)	825, 1034, 1325, 1919, 2164
BstNSI	RCATGY	3 cut(s)	169, 1138, 1598
BstSCI	CCNGG	7 cut(s)	823, 1032, 1323, 1671, 1917, 2162, 2812
BstSFI	CTRYAG	4 cut(s)	909, 1287, 1573, 2603
BstSLI	GKGCMC	1 cut(s)	1072
BstUI	CGCG	2 cut(s)	155, 435
BstV1I	GCAGC	7 cut(s)	550, 1066, 1072, 1444, 2827, 2839, 2842
BstV2I	GAAGAC	5 cut(s)	70, 588, 2578, 2625, 3068
BstX2I	RGATCY	8 cut(s)	28, 1039, 1304, 1450, 1921, 2282, 2467, 3037
BstXI	CCANNNNNNTGG	3 cut(s)	300, 2490, 2792
BstYI	RGATCY	8 cut(s)	28, 1039, 1304, 1450, 1921, 2282, 2467, 3037
Bsu15I	ATCGAT	2 cut(s)	2628, 3072
BsuI	GTATCC	1 cut(s)	1907
BsuRI	GGCC	1 cut(s)	2716
BsuTUI	ATCGAT	2 cut(s)	2628, 3072
BtgZI	GCGATG	1 cut(s)	1906
BtsI	GCAGTG	3 cut(s)	1648, 1740, 2040
BtsIMutI	CAGTG	7 cut(s)	190, 759, 1648, 1740, 2022, 2040, 2216
BveI	ACCTGC	1 cut(s)	1246
Cac8I	GCNNGC	7 cut(s)	167, 820, 1059, 1266, 1592, 2103, 2244
CfoI	GCGC	3 cut(s)	70, 437, 1225
Cfr13I	GGNCC	5 cut(s)	18, 898, 2114, 2435, 2715
ClaI	ATCGAT	2 cut(s)	2628, 3072
CseI	GACGC	3 cut(s)	109, 2630, 3073
Csp6I	GTAC	8 cut(s)	682, 829, 920, 1205, 1235, 2513, 2923, 3083
CviAII	CATG	7 cut(s)	166, 445, 923, 1135, 1277, 1595, 1955
CviQI	GTAC	8 cut(s)	682, 829, 920, 1205, 1235, 2513, 2923, 3083
DraI	TTTAAA	1 cut(s)	883
DraIII	CACNNNGTG	1 cut(s)	1547
Eam1104I	CTCTTC	4 cut(s)	466, 1387, 2169, 2775
EarI	CTCTTC	4 cut(s)	466, 1387, 2169, 2775
EciI	GGCGGA	1 cut(s)	2352
Ecl136II	GAGCTC	2 cut(s)	649, 2885
Eco130I	CCWWGG	2 cut(s)	981, 2345
Eco24I	GRGCYC	3 cut(s)	651, 2135, 2887
Eco32I	GATATC	2 cut(s)	666, 1913
Eco47I	GGWCC	4 cut(s)	18, 898, 2114, 2435
Eco53kI	GAGCTC	2 cut(s)	649, 2885
Eco57I	CTGAAG	6 cut(s)	582, 677, 1125, 1368, 2667, 2882
EcoICRI	GAGCTC	2 cut(s)	649, 2885
EcoRI	GAATTC	1 cut(s)	2688
EcoRII	CCWGG	5 cut(s)	823, 1032, 1323, 1917, 2162
EcoRV	GATATC	2 cut(s)	666, 1913
EcoT14I	CCWWGG	2 cut(s)	981, 2345
EcoT38I	GRGCYC	3 cut(s)	651, 2135, 2887
ErhI	CCWWGG	2 cut(s)	981, 2345
FaeI	CATG	7 cut(s)	169, 448, 926, 1138, 1280, 1598, 1958
FalI	AAGNNNNNCTT	2 cut(s)	1407, 1439
FaqI	GGGAC	2 cut(s)	911, 1662
FatI	CATG	7 cut(s)	165, 444, 922, 1134, 1276, 1594, 1954
FauI	CCCGC	1 cut(s)	690
FauNDI	CATATG	1 cut(s)	2989
FbaI	TGATCA	3 cut(s)	33, 925, 2254
FblI	GTMKAC	2 cut(s)	905, 2963
Fnu4HI	GCNGC	7 cut(s)	564, 1055, 1086, 1458, 2828, 2831, 2841
FriOI	GRGCYC	3 cut(s)	651, 2135, 2887
Fsp4HI	GCNGC	7 cut(s)	564, 1055, 1086, 1458, 2828, 2831, 2841
FspBI	CTAG	6 cut(s)	1127, 1265, 2196, 2424, 2528, 2853
GlaI	GCGC	3 cut(s)	69, 436, 1224
GluI	GCNGC	7 cut(s)	564, 1055, 1086, 1458, 2828, 2831, 2841
GsuI	CTGGAG	2 cut(s)	1901, 2483
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	2716
HapII	CCGG	4 cut(s)	407, 422, 1672, 2813
HgaI	GACGC	3 cut(s)	109, 2630, 3073
HhaI	GCGC	3 cut(s)	70, 437, 1225
Hin1II	CATG	7 cut(s)	169, 448, 926, 1138, 1280, 1598, 1958
Hin6I	GCGC	3 cut(s)	68, 435, 1223
HinP1I	GCGC	3 cut(s)	68, 435, 1223
HincII	GTYRAC	1 cut(s)	1393
HindII	GTYRAC	1 cut(s)	1393
HindIII	AAGCTT	3 cut(s)	787, 1533, 2365
HpaII	CCGG	4 cut(s)	407, 422, 1672, 2813
HphI	GGTGA	2 cut(s)	470, 660
HpyAV	CCTTC	7 cut(s)	190, 361, 1092, 1409, 1595, 2455, 2550
HpyCH4III	ACNGT	5 cut(s)	22, 252, 2607, 3082, 3087
HpyCH4IV	ACGT	2 cut(s)	1941, 2929
HpyF10VI	GCNNNNNNNGC	9 cut(s)	1054, 1067, 1229, 1238, 1532, 1943, 2644, 2849, 2891
HpySE526I	ACGT	2 cut(s)	1941, 2929
Hsp92II	CATG	7 cut(s)	169, 448, 926, 1138, 1280, 1598, 1958
HspAI	GCGC	3 cut(s)	68, 435, 1223
Kpn2I	TCCGGA	1 cut(s)	421
Ksp22I	TGATCA	3 cut(s)	33, 925, 2254
LguI	GCTCTTC	1 cut(s)	466
LmnI	GCTCC	8 cut(s)	424, 424, 646, 654, 1220, 1682, 2882, 2890
Lsp1109I	GCAGC	7 cut(s)	550, 1066, 1072, 1444, 2827, 2839, 2842
LweI	GCATC	8 cut(s)	325, 439, 1019, 1429, 1513, 1732, 1864, 2038
MaeI	CTAG	6 cut(s)	1127, 1265, 2196, 2424, 2528, 2853
MaeII	ACGT	2 cut(s)	1941, 2929
MaeIII	GTNAC	4 cut(s)	1475, 1735, 2264, 2440
MfeI	CAATTG	3 cut(s)	1728, 2430, 2654
MflI	RGATCY	8 cut(s)	28, 1039, 1304, 1450, 1921, 2282, 2467, 3037
MhlI	GDGCHC	5 cut(s)	651, 729, 1072, 2135, 2887
MlyI	GAGTC	3 cut(s)	260, 1442, 2488
MmeI	TCCRAC	7 cut(s)	1059, 1416, 1540, 2455, 2798, 2890, 2912
MroI	TCCGGA	1 cut(s)	421
MslI	CAYNNNNRTG	3 cut(s)	298, 1350, 2488
MspA1I	CMGCKG	2 cut(s)	697, 940
MspCI	CTTAAG	2 cut(s)	2549, 2735
MspI	CCGG	4 cut(s)	407, 422, 1672, 2813
MspR9I	CCNGG	7 cut(s)	825, 1034, 1325, 1673, 1919, 2164, 2814
MunI	CAATTG	3 cut(s)	1728, 2430, 2654
Mva1269I	GAATGC	3 cut(s)	2173, 2308, 2484
MvaI	CCWGG	5 cut(s)	825, 1034, 1325, 1919, 2164
MvnI	CGCG	2 cut(s)	155, 435
MwoI	GCNNNNNNNGC	9 cut(s)	1054, 1067, 1229, 1238, 1532, 1943, 2644, 2849, 2891
NciI	CCSGG	2 cut(s)	1673, 2814
NdeI	CATATG	1 cut(s)	2989
NheI	GCTAGC	1 cut(s)	1264
NlaIII	CATG	7 cut(s)	169, 448, 926, 1138, 1280, 1598, 1958
NlaIV	GGNNCC	6 cut(s)	420, 899, 1200, 1555, 1670, 2469
NmuCI	GTSAC	2 cut(s)	1735, 2264
NspI	RCATGY	3 cut(s)	169, 1138, 1598
OliI	CACNNNNGTG	1 cut(s)	2488
PaeI	GCATGC	1 cut(s)	169
PasI	CCCWGGG	2 cut(s)	824, 1324
PciI	ACATGT	1 cut(s)	1134
PciSI	GCTCTTC	1 cut(s)	466
PctI	GAATGC	3 cut(s)	2173, 2308, 2484
PfeI	GAWTC	7 cut(s)	54, 127, 932, 1355, 1400, 2396, 2524
PfoI	TCCNGGA	3 cut(s)	1032, 1917, 2162
PkrI	GCNGC	7 cut(s)	565, 1056, 1087, 1459, 2829, 2832, 2842
Ple19I	CGATCG	1 cut(s)	327
PleI	GAGTC	3 cut(s)	260, 1441, 2488
PpsI	GAGTC	3 cut(s)	260, 1441, 2488
PscI	ACATGT	1 cut(s)	1134
Psp124BI	GAGCTC	2 cut(s)	651, 2887
Psp1406I	AACGTT	1 cut(s)	1941
Psp6I	CCWGG	5 cut(s)	823, 1032, 1323, 1917, 2162
PspGI	CCWGG	5 cut(s)	823, 1032, 1323, 1917, 2162
PspN4I	GGNNCC	6 cut(s)	420, 899, 1200, 1555, 1670, 2469
PspPI	GGNCC	5 cut(s)	18, 898, 2114, 2435, 2715
PsrI	GAACNNNNNNTAC	2 cut(s)	2800, 2832
PstI	CTGCAG	1 cut(s)	913
PsuI	RGATCY	8 cut(s)	28, 1039, 1304, 1450, 1921, 2282, 2467, 3037
PvuI	CGATCG	1 cut(s)	327
RsaI	GTAC	8 cut(s)	683, 830, 921, 1206, 1236, 2514, 2924, 3084
RsaNI	GTAC	8 cut(s)	682, 829, 920, 1205, 1235, 2513, 2923, 3083
RseI	CAYNNNNRTG	3 cut(s)	298, 1350, 2488
SacI	GAGCTC	2 cut(s)	651, 2887
SapI	GCTCTTC	1 cut(s)	466
SatI	GCNGC	7 cut(s)	564, 1055, 1086, 1458, 2828, 2831, 2841
Sau96I	GGNCC	5 cut(s)	18, 898, 2114, 2435, 2715
SchI	GAGTC	3 cut(s)	260, 1442, 2488
ScrFI	CCNGG	7 cut(s)	825, 1034, 1325, 1673, 1919, 2164, 2814
SduI	GDGCHC	5 cut(s)	651, 729, 1072, 2135, 2887
SfaNI	GCATC	8 cut(s)	325, 439, 1019, 1429, 1513, 1732, 1864, 2038
SfcI	CTRYAG	4 cut(s)	909, 1287, 1573, 2603
SinI	GGWCC	4 cut(s)	18, 898, 2114, 2435
SmiMI	CAYNNNNRTG	3 cut(s)	298, 1350, 2488
SmlI	CTYRAG	5 cut(s)	2549, 2641, 2735, 2834, 2999
SmoI	CTYRAG	5 cut(s)	2549, 2641, 2735, 2834, 2999
SphI	GCATGC	1 cut(s)	169
SsiI	CCGC	9 cut(s)	155, 530, 697, 719, 938, 1375, 1639, 1801, 2337
SspI	AATATT	1 cut(s)	3021
SspMI	CTAG	6 cut(s)	1127, 1265, 2196, 2424, 2528, 2853
SstI	GAGCTC	2 cut(s)	651, 2887
StyD4I	CCNGG	7 cut(s)	823, 1032, 1323, 1671, 1917, 2162, 2812
StyI	CCWWGG	2 cut(s)	981, 2345
TaaI	ACNGT	5 cut(s)	22, 252, 2607, 3082, 3087
TaiI	ACGT	2 cut(s)	1944, 2932
TaqI	TCGA	9 cut(s)	52, 760, 1358, 1538, 1985, 2360, 2628, 2692, 3072
TatI	WGTACW	2 cut(s)	681, 2922
TfiI	GAWTC	7 cut(s)	54, 127, 932, 1355, 1400, 2396, 2524
TscAI	CASTG	7 cut(s)	197, 759, 1648, 1740, 2022, 2040, 2223
TseFI	GTSAC	2 cut(s)	1735, 2264
TseI	GCWGC	7 cut(s)	563, 1054, 1085, 1457, 2827, 2830, 2840
Tsp45I	GTSAC	2 cut(s)	1735, 2264
TspRI	CASTG	7 cut(s)	197, 759, 1648, 1740, 2022, 2040, 2223
Vha464I	CTTAAG	2 cut(s)	2549, 2735
VpaK11BI	GGWCC	4 cut(s)	18, 898, 2114, 2435
XapI	RAATTY	7 cut(s)	185, 360, 811, 1583, 1783, 1815, 2688
XbaI	TCTAGA	1 cut(s)	1126
XceI	RCATGY	3 cut(s)	169, 1138, 1598
XcmI	CCANNNNNNNNNTGG	2 cut(s)	297, 566
XmiI	GTMKAC	2 cut(s)	905, 2963
XspI	CTAG	6 cut(s)	1127, 1265, 2196, 2424, 2528, 2853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.