Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0011333

Physical Location & Seq

Genomic Coordinates Forward (+)

12995649 .. 12996920

Gene Structure 1272 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1087700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGATAAGGTCAGTCATGCTTCGATCTTGTCCGTCGTCTTCTCCTCTGCTCCGAGAAGCTTATCCCACCACGCGATCATCTCCGTCGTTGTTAACGGCAAGAACGCCGAACTTCACATCCACTGTTTGTTCCTCGTCGAGAACTCCTTCTTATATTCCAAAGCTCGAGCCTTTCAGCCGGTCAAAGTTTGAGCGCGGCATTAAAGACCCGCCCTTGATCGAAAAGTGCGAGAACGAGCTCTCTGACTACTGTTCGACGCTGGAAGGAGACGAGTCCTATAGCTGCTGGAGAGCATATTTCGAGCTCAAAGATCTCGAGAAGGAGATGCCAAAACAGGATGTGGAGAAGCTGATTCTTCAGGCAGGAGGCGTGAAGACGTTGGTGGGCTGCCTACACGGGATTGCTGCAATCCAAAAGGAAAAGAAGTTGGGATTCAAATCGGCAAAGCCGTCGAACGTGGGAAAAGGAGAGAGAGAGTGTCCGATACCAGATGGGTTGCCAAAATCGGCTGATGAGCTGGAGGAAGAAGAAAGAGGAAGAATGCCGGATTCACCCTTCACCAGGCTGCTTAGAATCAAGGGGAGGCACCCTGTTTGGTATTCTCCGACCCCCGACCACGAAACAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006935 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0010154 GO:0010183 GO:0022414 GO:0032501 GO:0032502 GO:0036033 GO:0040011 GO:0042221 GO:0042330 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0044877 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050832 GO:0050896 GO:0050918 GO:0051704 GO:0051707 GO:0061458 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

23.5

Weight (kDa)

7.55

Isoelectric Point (pI)

63.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15890 AT2G15890
fragaria_vesca	FvH4_2g07110
malus_domestica	MD05G1073200.v1.1 MD10G1087700.v1.1
prunus_persica	Prupe.8G113800_v2.0.a1 Prupe.8G113800_v2.0.a1 Prupe.8G113800_v2.0.a1
pyrus_communis	pycom10g07000
rosa_chinensis	RchiOBHm_Chr6g0259611
rosa_laevigata	RLG00000014518
rosa_multiflora	Rmu_sc0000536.1_g000031 Rmu_ssc0000050.1_g000007
rosa_roxburghii	Rroxscaffold_7G00206900
rosa_rugosa	Rorug05G0590000
rosa_samantha	Rh6AG106100 Rh6BG100500 Rh6CG095000 Rh6DG089100
rosa_wichuraiana	Rw6G009160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	585
AccII	CGCG	2 cut(s)	73, 195
AciI	CCGC	2 cut(s)	195, 209
AcuI	CTGAAG	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	561
AgsI	TTSAA	1 cut(s)	436
AjnI	CCWGG	1 cut(s)	560
AloI	GAACNNNNNNTCC	2 cut(s)	101, 133
AluBI	AGCT	7 cut(s)	59, 163, 238, 282, 304, 349, 517
AluI	AGCT	7 cut(s)	59, 163, 238, 282, 304, 349, 517
Alw21I	GWGCWC	2 cut(s)	240, 306
Alw26I	GTCTC	1 cut(s)	261
Ama87I	CYCGRG	2 cut(s)	164, 314
ApeKI	GCWGC	4 cut(s)	282, 387, 404, 565
Asp700I	GAANNNNTTC	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	195
AsuHPI	GGTGA	2 cut(s)	543, 550
AvaI	CYCGRG	2 cut(s)	164, 314
BanI	GGYRCC	1 cut(s)	585
BanII	GRGCYC	2 cut(s)	240, 306
BbsI	GAAGAC	2 cut(s)	30, 380
Bbv12I	GWGCWC	2 cut(s)	240, 306
BbvI	GCAGC	4 cut(s)	269, 374, 391, 552
BccI	CCATC	1 cut(s)	485
BceAI	ACGGC	2 cut(s)	111, 433
BcgI	CGANNNNNNTGC	2 cut(s)	432, 466
BciT130I	CCWGG	1 cut(s)	562
BcoDI	GTCTC	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	277
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	5 cut(s)	196, 283, 388, 405, 566
BlsI	GCNGC	5 cut(s)	197, 284, 389, 406, 567
Bme1390I	CCNGG	1 cut(s)	562
BmeT110I	CYCGRG	2 cut(s)	164, 314
BmiI	GGNNCC	1 cut(s)	587
BmrFI	CCNGG	1 cut(s)	562
BmsI	GCATC	1 cut(s)	315
BpiI	GAAGAC	2 cut(s)	30, 380
BpmI	CTGGAG	2 cut(s)	307, 539
BsaBI	GATNNNNATC	1 cut(s)	436
Bsc4I	CCNNNNNNNGG	1 cut(s)	561
Bse118I	RCCGGY	1 cut(s)	177
Bse8I	GATNNNNATC	1 cut(s)	436
BseBI	CCWGG	1 cut(s)	562
BseGI	GGATG	2 cut(s)	116, 343
BseJI	GATNNNNATC	1 cut(s)	436
BseLI	CCNNNNNNNGG	1 cut(s)	561
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	4 cut(s)	269, 374, 391, 552
Bsh1236I	CGCG	2 cut(s)	73, 195
BshNI	GGYRCC	1 cut(s)	585
BsiHKAI	GWGCWC	2 cut(s)	240, 306
BsiHKCI	CYCGRG	2 cut(s)	164, 314
BsiSI	CCGG	2 cut(s)	178, 545
BslI	CCNNNNNNNGG	1 cut(s)	561
BsmAI	GTCTC	1 cut(s)	261
BsmBI	CGTCTC	1 cut(s)	261
BsmI	GAATGC	1 cut(s)	546
BsoBI	CYCGRG	2 cut(s)	164, 314
Bsp1286I	GDGCHC	2 cut(s)	240, 306
Bsp143I	GATC	4 cut(s)	23, 74, 216, 310
BspACI	CCGC	2 cut(s)	195, 209
BspFNI	CGCG	2 cut(s)	73, 195
BspLI	GGNNCC	1 cut(s)	587
BspT107I	GGYRCC	1 cut(s)	585
BsrFI	RCCGGY	1 cut(s)	177
BssAI	RCCGGY	1 cut(s)	177
BssMI	GATC	4 cut(s)	23, 74, 216, 310
Bst2UI	CCWGG	1 cut(s)	562
Bst4CI	ACNGT	2 cut(s)	124, 251
BstDEI	CTNAG	1 cut(s)	569
BstENI	CCTNNNNNAGG	1 cut(s)	559
BstF5I	GGATG	2 cut(s)	116, 343
BstFNI	CGCG	2 cut(s)	73, 195
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	4 cut(s)	26, 77, 219, 313
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	4 cut(s)	23, 74, 216, 310
BstNI	CCWGG	1 cut(s)	562
BstSCI	CCNGG	1 cut(s)	560
BstSFI	CTRYAG	1 cut(s)	277
BstUI	CGCG	2 cut(s)	73, 195
BstV1I	GCAGC	4 cut(s)	269, 374, 391, 552
BstV2I	GAAGAC	2 cut(s)	30, 380
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BtsCI	GGATG	2 cut(s)	116, 343
BtsIMutI	CAGTG	1 cut(s)	120
CfoI	GCGC	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	177
CseI	GACGC	1 cut(s)	265
CviAII	CATG	1 cut(s)	16
DdeI	CTNAG	1 cut(s)	569
DpnI	GATC	4 cut(s)	25, 76, 218, 312
DpnII	GATC	4 cut(s)	23, 74, 216, 310
Ecl136II	GAGCTC	2 cut(s)	238, 304
Eco24I	GRGCYC	2 cut(s)	240, 306
Eco53kI	GAGCTC	2 cut(s)	238, 304
Eco57I	CTGAAG	1 cut(s)	341
Eco88I	CYCGRG	2 cut(s)	164, 314
EcoICRI	GAGCTC	2 cut(s)	238, 304
EcoNI	CCTNNNNNAGG	1 cut(s)	559
EcoRII	CCWGG	1 cut(s)	560
EcoT38I	GRGCYC	2 cut(s)	240, 306
Esp3I	CGTCTC	1 cut(s)	261
FaeI	CATG	1 cut(s)	19
FaiI	YATR	4 cut(s)	17, 153, 279, 295
FatI	CATG	1 cut(s)	15
FauI	CCCGC	1 cut(s)	216
Fnu4HI	GCNGC	5 cut(s)	196, 283, 388, 405, 566
FokI	GGATG	2 cut(s)	103, 350
FriOI	GRGCYC	2 cut(s)	240, 306
Fsp4HI	GCNGC	5 cut(s)	196, 283, 388, 405, 566
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	5 cut(s)	196, 283, 388, 405, 566
GsuI	CTGGAG	2 cut(s)	307, 539
HapII	CCGG	2 cut(s)	178, 545
HgaI	GACGC	1 cut(s)	265
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	1 cut(s)	19
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HindIII	AAGCTT	1 cut(s)	57
HinfI	GANTC	5 cut(s)	272, 352, 432, 548, 573
HpaI	GTTAAC	1 cut(s)	93
HpaII	CCGG	2 cut(s)	178, 545
HphI	GGTGA	2 cut(s)	543, 550
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	4 cut(s)	53, 244, 483, 606
Hpy188III	TCNNGA	3 cut(s)	138, 314, 316
Hpy8I	GTNNAC	1 cut(s)	93
Hpy99I	CGWCG	5 cut(s)	37, 88, 139, 259, 454
HpyAV	CCTTC	4 cut(s)	156, 257, 313, 565
HpyCH4III	ACNGT	2 cut(s)	124, 251
HpyCH4IV	ACGT	2 cut(s)	377, 456
HpyCH4V	TGCA	1 cut(s)	407
HpyF3I	CTNAG	1 cut(s)	569
HpySE526I	ACGT	2 cut(s)	377, 456
Hsp92II	CATG	1 cut(s)	19
HspAI	GCGC	1 cut(s)	193
KspAI	GTTAAC	1 cut(s)	93
Kzo9I	GATC	4 cut(s)	23, 74, 216, 310
LmnI	GCTCC	1 cut(s)	54
Lsp1109I	GCAGC	4 cut(s)	269, 374, 391, 552
LweI	GCATC	1 cut(s)	315
MaeII	ACGT	2 cut(s)	377, 456
MalI	GATC	4 cut(s)	25, 76, 218, 312
MboI	GATC	4 cut(s)	23, 74, 216, 310
MboII	GAAGA	6 cut(s)	30, 347, 385, 536, 539, 549
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	2 cut(s)	240, 306
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	629
MnlI	CCTC	6 cut(s)	54, 142, 359, 514, 527, 576
MroXI	GAANNNNTTC	1 cut(s)	145
MseI	TTAA	2 cut(s)	92, 201
MspI	CCGG	2 cut(s)	178, 545
MspR9I	CCNGG	1 cut(s)	562
Mva1269I	GAATGC	1 cut(s)	546
MvaI	CCWGG	1 cut(s)	562
MvnI	CGCG	2 cut(s)	73, 195
NdeII	GATC	4 cut(s)	23, 74, 216, 310
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	1 cut(s)	587
PaeR7I	CTCGAG	2 cut(s)	164, 314
PcsI	WCGNNNNNNNCGW	2 cut(s)	225, 446
PctI	GAATGC	1 cut(s)	546
PdmI	GAANNNNTTC	1 cut(s)	145
PfeI	GAWTC	4 cut(s)	352, 432, 548, 573
PkrI	GCNGC	5 cut(s)	197, 284, 389, 406, 567
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
Psp124BI	GAGCTC	2 cut(s)	240, 306
Psp6I	CCWGG	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	560
PspN4I	GGNNCC	1 cut(s)	587
PspXI	VCTCGAGB	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	310
SacI	GAGCTC	2 cut(s)	240, 306
SaqAI	TTAA	2 cut(s)	92, 201
SatI	GCNGC	5 cut(s)	196, 283, 388, 405, 566
Sau3AI	GATC	4 cut(s)	23, 74, 216, 310
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	562
SduI	GDGCHC	2 cut(s)	240, 306
SfaNI	GCATC	1 cut(s)	315
SfcI	CTRYAG	1 cut(s)	277
Sfr274I	CTCGAG	2 cut(s)	164, 314
SlaI	CTCGAG	2 cut(s)	164, 314
SmlI	CTYRAG	2 cut(s)	164, 314
SmoI	CTYRAG	2 cut(s)	164, 314
SsiI	CCGC	2 cut(s)	195, 209
SstI	GAGCTC	2 cut(s)	240, 306
StyD4I	CCNGG	1 cut(s)	560
TaaI	ACNGT	2 cut(s)	124, 251
TaiI	ACGT	2 cut(s)	380, 459
TaqI	TCGA	8 cut(s)	22, 137, 165, 219, 254, 300, 315, 452
TauI	GCSGC	1 cut(s)	198
TfiI	GAWTC	4 cut(s)	352, 432, 548, 573
Tru1I	TTAA	2 cut(s)	92, 201
Tru9I	TTAA	2 cut(s)	92, 201
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	4 cut(s)	282, 387, 404, 565
TspGWI	ACGGA	2 cut(s)	21, 72
TspRI	CASTG	1 cut(s)	127
XagI	CCTNNNNNAGG	1 cut(s)	559
XhoI	CTCGAG	2 cut(s)	164, 314
XmnI	GAANNNNTTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.