Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011333

Physical Location & Seq

Genomic Coordinates Forward (+)

14203373 .. 14204733

Gene Structure 1361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G113800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGATAAAAACAGTCATGCTTCGTTCTTGCCCTTCTTCTTCTCCTCTGCTCTTCGAAGCCAACAGAGAAGCTTTTTCTGCACGAGCATCTTCGCCGTCGTCGTCATCAACGACGCCGAAGTTCGCTTCCACTATCTGTTGCTCGTCCAGAAACCATGCTTACATTCCAAAGCTCGAGCCTTTTAGCCGGTCCAAGCTTGATCGCGCCATTAGCGACCCGCCCTTGATCGAAAAGTGCGAGAACGAGCTCTCTGATTACTGTTCAACGCTCGAAGGAGACGAGTCTTATGGCTGCTGGAGAGCGTATTTTGAGCTCAAGGATCTAGAGAAGGAGATACCAAAACAAGATGTGGAGAAGCTGATTCTTCAAGCAGGAGGTGTAAAGACATTAGTGGGATGCTTACATGGCATTGCAGCAATAAAAAAAGATAAGAAGCATGGATTTAATTCAGCAAAGCCATCAGAGGTGGTAAAAGAAGGAGAGAGACTCTGCCCCATACCAGATGGGTTGCCAAAATCAGCTCAGGAGCTGGAGGAAGAAGAAAGTTCAAGAATGCCAGATTCACCCTTCACCAGGCTTCTTAGAATTAAGGGGAGGCACCCTGCTTGGTATTCAGCTACCCCTGACCATGAAACAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006935 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0010154 GO:0010183 GO:0022414 GO:0032501 GO:0032502 GO:0036033 GO:0040011 GO:0042221 GO:0042330 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0044877 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050832 GO:0050896 GO:0050918 GO:0051704 GO:0051707 GO:0061458 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

23.68

Weight (kDa)

6.25

Isoelectric Point (pI)

57.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15890 AT2G15890
fragaria_vesca	FvH4_2g07110
malus_domestica	MD05G1073200.v1.1 MD10G1087700.v1.1
prunus_persica	Prupe.8G113800_v2.0.a1 Prupe.8G113800_v2.0.a1 Prupe.8G113800_v2.0.a1
pyrus_communis	pycom10g07000
rosa_chinensis	RchiOBHm_Chr6g0259611
rosa_laevigata	RLG00000014518
rosa_multiflora	Rmu_sc0000536.1_g000031 Rmu_ssc0000050.1_g000007
rosa_roxburghii	Rroxscaffold_7G00206900
rosa_rugosa	Rorug05G0590000
rosa_samantha	Rh6AG106100 Rh6BG100500 Rh6CG095000 Rh6DG089100
rosa_wichuraiana	Rw6G009160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	597
AccII	CGCG	1 cut(s)	204
AciI	CCGC	1 cut(s)	218
AclWI	GGATC	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	113
AfiI	CCNNNNNNNGG	1 cut(s)	573
AgsI	TTSAA	3 cut(s)	264, 368, 549
AjnI	CCWGG	1 cut(s)	572
AluBI	AGCT	9 cut(s)	71, 172, 196, 247, 313, 358, 521, 529, 617
AluI	AGCT	9 cut(s)	71, 172, 196, 247, 313, 358, 521, 529, 617
Alw21I	GWGCWC	2 cut(s)	249, 315
Alw26I	GTCTC	2 cut(s)	270, 478
AlwI	GGATC	1 cut(s)	327
AlwNI	CAGNNNCTG	1 cut(s)	529
Ama87I	CYCGRG	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	291, 413
AspLEI	GCGC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	189
AsuHPI	GGTGA	2 cut(s)	555, 562
AsuII	TTCGAA	1 cut(s)	54
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	597
BanII	GRGCYC	2 cut(s)	249, 315
BauI	CACGAG	1 cut(s)	81
Bbv12I	GWGCWC	2 cut(s)	249, 315
BbvI	GCAGC	2 cut(s)	278, 425
BccI	CCATC	2 cut(s)	466, 497
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	574
BcoDI	GTCTC	2 cut(s)	270, 478
BfaI	CTAG	1 cut(s)	323
BisI	GCNGC	2 cut(s)	292, 414
BlsI	GCNGC	2 cut(s)	293, 415
Bme1390I	CCNGG	1 cut(s)	574
Bme18I	GGWCC	1 cut(s)	189
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	189
BmiI	GGNNCC	1 cut(s)	599
BmrFI	CCNGG	1 cut(s)	574
BmsI	GCATC	2 cut(s)	95, 386
BplI	GAGNNNNNCTC	2 cut(s)	471, 503
BpmI	CTGGAG	2 cut(s)	316, 551
Bpu10I	CCTNAGC	1 cut(s)	522
Bpu14I	TTCGAA	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	299
BsaHI	GRCGYC	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	573
Bse118I	RCCGGY	1 cut(s)	186
Bse3DI	GCAATG	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	574
BseGI	GGATG	1 cut(s)	401
BseLI	CCNNNNNNNGG	1 cut(s)	573
BseMI	GCAATG	1 cut(s)	408
BseMII	CTCAG	1 cut(s)	536
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	2 cut(s)	278, 425
BsgI	GTGCAG	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	204
BshNI	GGYRCC	1 cut(s)	597
BsiHKAI	GWGCWC	2 cut(s)	249, 315
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	573
BsmAI	GTCTC	2 cut(s)	270, 478
BsmBI	CGTCTC	1 cut(s)	270
BsmI	GAATGC	1 cut(s)	558
BsoBI	CYCGRG	1 cut(s)	173
Bsp119I	TTCGAA	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	249, 315
Bsp143I	GATC	3 cut(s)	199, 225, 319
BspACI	CCGC	1 cut(s)	218
BspCNI	CTCAG	1 cut(s)	535
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	599
BspPI	GGATC	1 cut(s)	327
BspQI	GCTCTTC	1 cut(s)	56
BspT104I	TTCGAA	1 cut(s)	54
BspT107I	GGYRCC	1 cut(s)	597
BsrDI	GCAATG	1 cut(s)	408
BsrFI	RCCGGY	1 cut(s)	186
BssAI	RCCGGY	1 cut(s)	186
BssMI	GATC	3 cut(s)	199, 225, 319
BssNI	GRCGYC	1 cut(s)	113
BssSI	CACGAG	1 cut(s)	81
Bst2BI	CACGAG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	574
Bst4CI	ACNGT	2 cut(s)	13, 260
Bst6I	CTCTTC	1 cut(s)	56
BstACI	GRCGYC	1 cut(s)	113
BstBI	TTCGAA	1 cut(s)	54
BstDEI	CTNAG	2 cut(s)	522, 581
BstENI	CCTNNNNNAGG	1 cut(s)	571
BstF5I	GGATG	1 cut(s)	401
BstFNI	CGCG	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	3 cut(s)	202, 228, 322
BstMAI	GTCTC	2 cut(s)	270, 478
BstMBI	GATC	3 cut(s)	199, 225, 319
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 210, 405
BstNI	CCWGG	1 cut(s)	574
BstSCI	CCNGG	1 cut(s)	572
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	278, 425
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	401
CaiI	CAGNNNCTG	1 cut(s)	529
CfoI	GCGC	1 cut(s)	206
Cfr10I	RCCGGY	1 cut(s)	186
Cfr13I	GGNCC	1 cut(s)	189
CseI	GACGC	1 cut(s)	121
CviAII	CATG	5 cut(s)	16, 155, 404, 437, 629
DdeI	CTNAG	2 cut(s)	522, 581
DpnI	GATC	3 cut(s)	201, 227, 321
DpnII	GATC	3 cut(s)	199, 225, 319
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Ecl136II	GAGCTC	2 cut(s)	247, 313
Eco24I	GRGCYC	2 cut(s)	249, 315
Eco47I	GGWCC	1 cut(s)	189
Eco53kI	GAGCTC	2 cut(s)	247, 313
Eco88I	CYCGRG	1 cut(s)	173
EcoICRI	GAGCTC	2 cut(s)	247, 313
EcoNI	CCTNNNNNAGG	1 cut(s)	571
EcoRII	CCWGG	1 cut(s)	572
EcoT38I	GRGCYC	2 cut(s)	249, 315
Esp3I	CGTCTC	1 cut(s)	270
FaeI	CATG	5 cut(s)	19, 158, 407, 440, 632
FaiI	YATR	7 cut(s)	17, 156, 288, 405, 438, 497, 630
FatI	CATG	5 cut(s)	15, 154, 403, 436, 628
FauI	CCCGC	1 cut(s)	225
Fnu4HI	GCNGC	2 cut(s)	292, 414
FokI	GGATG	1 cut(s)	408
FriOI	GRGCYC	2 cut(s)	249, 315
Fsp4HI	GCNGC	2 cut(s)	292, 414
FspBI	CTAG	1 cut(s)	323
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	2 cut(s)	292, 414
GsuI	CTGGAG	2 cut(s)	316, 551
HapII	CCGG	1 cut(s)	187
HgaI	GACGC	1 cut(s)	121
HhaI	GCGC	1 cut(s)	206
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	5 cut(s)	19, 158, 407, 440, 632
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HindIII	AAGCTT	2 cut(s)	69, 194
HinfI	GANTC	4 cut(s)	281, 361, 486, 560
HpaII	CCGG	1 cut(s)	187
HphI	GGTGA	2 cut(s)	555, 562
Hpy188I	TCNGA	2 cut(s)	253, 463
Hpy188III	TCNNGA	4 cut(s)	147, 323, 524, 549
Hpy99I	CGWCG	3 cut(s)	100, 103, 115
HpyAV	CCTTC	5 cut(s)	42, 266, 322, 470, 577
HpyCH4III	ACNGT	2 cut(s)	13, 260
HpyCH4V	TGCA	2 cut(s)	80, 413
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 210, 405
HpyF3I	CTNAG	2 cut(s)	522, 581
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	5 cut(s)	19, 158, 407, 440, 632
HspAI	GCGC	1 cut(s)	204
Kzo9I	GATC	3 cut(s)	199, 225, 319
LguI	GCTCTTC	1 cut(s)	56
LmnI	GCTCC	1 cut(s)	526
Lsp1109I	GCAGC	2 cut(s)	278, 425
LweI	GCATC	2 cut(s)	95, 386
MaeI	CTAG	1 cut(s)	323
MalI	GATC	3 cut(s)	201, 227, 321
MboI	GATC	3 cut(s)	199, 225, 319
MboII	GAAGA	7 cut(s)	27, 30, 43, 81, 356, 548, 551
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	2 cut(s)	249, 315
MluCI	AATT	2 cut(s)	445, 585
MlyI	GAGTC	2 cut(s)	290, 480
MnlI	CCTC	5 cut(s)	54, 368, 457, 526, 588
MseI	TTAA	2 cut(s)	444, 588
MspI	CCGG	1 cut(s)	187
MspR9I	CCNGG	1 cut(s)	574
Mva1269I	GAATGC	1 cut(s)	558
MvaI	CCWGG	1 cut(s)	574
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	3 cut(s)	77, 210, 405
NdeII	GATC	3 cut(s)	199, 225, 319
NlaIII	CATG	5 cut(s)	19, 158, 407, 440, 632
NlaIV	GGNNCC	1 cut(s)	599
NspV	TTCGAA	1 cut(s)	54
PaeR7I	CTCGAG	1 cut(s)	173
PciSI	GCTCTTC	1 cut(s)	56
PcsI	WCGNNNNNNNCGW	4 cut(s)	98, 107, 234, 276
PctI	GAATGC	1 cut(s)	558
PfeI	GAWTC	2 cut(s)	361, 560
PkrI	GCNGC	2 cut(s)	293, 415
PleI	GAGTC	2 cut(s)	289, 480
PpsI	GAGTC	2 cut(s)	289, 480
Psp124BI	GAGCTC	2 cut(s)	249, 315
Psp6I	CCWGG	1 cut(s)	572
PspGI	CCWGG	1 cut(s)	572
PspN4I	GGNNCC	1 cut(s)	599
PspPI	GGNCC	1 cut(s)	189
PspXI	VCTCGAGB	1 cut(s)	173
PstNI	CAGNNNCTG	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	319
SacI	GAGCTC	2 cut(s)	249, 315
SapI	GCTCTTC	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	444, 588
SatI	GCNGC	2 cut(s)	292, 414
Sau3AI	GATC	3 cut(s)	199, 225, 319
Sau96I	GGNCC	1 cut(s)	189
SchI	GAGTC	2 cut(s)	290, 480
ScrFI	CCNGG	1 cut(s)	574
SduI	GDGCHC	2 cut(s)	249, 315
SfaNI	GCATC	2 cut(s)	95, 386
Sfr274I	CTCGAG	1 cut(s)	173
SfuI	TTCGAA	1 cut(s)	54
SinI	GGWCC	1 cut(s)	189
SlaI	CTCGAG	1 cut(s)	173
SmlI	CTYRAG	2 cut(s)	173, 314
SmoI	CTYRAG	2 cut(s)	173, 314
Sse9I	AATT	2 cut(s)	445, 585
SsiI	CCGC	1 cut(s)	218
SspMI	CTAG	1 cut(s)	323
SstI	GAGCTC	2 cut(s)	249, 315
StyD4I	CCNGG	1 cut(s)	572
TaaI	ACNGT	2 cut(s)	13, 260
TaqI	TCGA	4 cut(s)	54, 174, 228, 270
TasI	AATT	2 cut(s)	445, 585
TfiI	GAWTC	2 cut(s)	361, 560
Tru1I	TTAA	2 cut(s)	444, 588
Tru9I	TTAA	2 cut(s)	444, 588
TseI	GCWGC	2 cut(s)	291, 413
VpaK11BI	GGWCC	1 cut(s)	189
XagI	CCTNNNNNAGG	1 cut(s)	571
XbaI	TCTAGA	1 cut(s)	322
XhoI	CTCGAG	1 cut(s)	173
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.