AT2G16030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014123
Physical Location & Seq
Reverse (-)
6973673 .. 6975007
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G16030.1

Sequence Viewer

Length: 696 bp
ATGGAGAGAAACGTCGAGAAGATGCTGAAGAGAGTATCAATAGTGTTCTTAAGCATCGGAACAGTATTAATGGTAATTATGATTCTCCAGACACCAAAAACTTGTATTTCTCCAGAAGCTCCATCGAAACCTCATACGCATTTCCCGAGATCTACATGCGATTCATCGCCTCGTCAGCATCTTCCTCTCCCAAAGAAGAACGCTCGAATCTGGTCCTCTGGAGCTTGGAAATCTCGTCTATACTCCTTCTCTACCTACTTCCTCCGATTTCGCGATCTCGGATTCATTCAAAATCACACCAAAGCTCTCTGTCTCTCCGCCGGAGCAGGCCATGCTCTGATGGCTCTTTCTCAGATCGGATTATCTGATGTTACCGCAGTTGAATTGGTTGATTCGATTCCTCTTGTGAAAAGAGCTGATCCTCATAACCTTCCGTTTTTCGACGGTGTCTTTGATTTTGCCTTCACTGCACATCTAGCTGAAGCTCTGTTTCCGTGGCAGTTTGTGGAGGAGATGGAGAGGACGGTGAGACGTGGCGGATTTTGTGTGGTTTCGGTTGATGAATGTGGTGGAGATGATGTAAGAGACATTGCTAGGCTTTTTCATAACTCCAAGGTCGTTGATGTTGCTAATGTAACCTTAGAAGGATCCAAAAAGACTAGTATACTATTCAAAGTTCAAGACTCTCCTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

231

Amino Acids

25.79

Weight (kDa)

8.84

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_11 PF08241 104 - 184 1.1e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16030 AT4G26730
fragaria_vesca FvH4_6g43920 FvH4_6g43920
malus_domestica MD09G1102000.v1.1 MD09G1127700.v1.1
prunus_persica Prupe.3G223700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0160701
rosa_laevigata RLG00000021234
rosa_multiflora Rmu_co8474907.1_g000001
rosa_roxburghii Rroxscaffold_2G00089470
rosa_rugosa Rorug02G0485100
rosa_samantha Rh2AG550100 Rh2BG564600 Rh2CG534500 Rh2DG573400
rosa_wichuraiana Rw2G045580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 664
AccII CGCG 1 cut(s) 273
AciI CCGC 3 cut(s) 318, 375, 537
AclWI GGATC 3 cut(s) 413, 642, 655
AcuI CTGAAG 2 cut(s) 47, 501
AflII CTTAAG 1 cut(s) 49
AgsI TTSAA 4 cut(s) 290, 383, 673, 680
AhlI ACTAGT 1 cut(s) 659
AjiI CACGTC 1 cut(s) 533
AluBI AGCT 6 cut(s) 119, 224, 305, 416, 479, 485
AluI AGCT 6 cut(s) 119, 224, 305, 416, 479, 485
Alw26I GTCTC 3 cut(s) 317, 523, 579
AlwI GGATC 3 cut(s) 413, 642, 655
Ama87I CYCGRG 1 cut(s) 145
AoxI GGCC 1 cut(s) 328
ArsI GACNNNNNNTTYG 2 cut(s) 434, 466
AseI ATTAAT 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 213
AsuHPI GGTGA 1 cut(s) 538
AvaI CYCGRG 1 cut(s) 145
AvaII GGWCC 1 cut(s) 213
BamHI GGATCC 1 cut(s) 647
BccI CCATC 3 cut(s) 130, 334, 508
BcoDI GTCTC 3 cut(s) 317, 523, 579
BcuI ACTAGT 1 cut(s) 659
BfaI CTAG 3 cut(s) 476, 594, 660
BfrI CTTAAG 1 cut(s) 49
BglII AGATCT 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 213
BmeT110I CYCGRG 1 cut(s) 145
BmgBI CACGTC 1 cut(s) 533
BmgT120I GGNCC 1 cut(s) 213
BmiI GGNNCC 1 cut(s) 649
BmsI GCATC 3 cut(s) 12, 63, 187
BpmI CTGGAG 3 cut(s) 71, 96, 240
BsaJI CCNNGG 2 cut(s) 494, 612
BsaXI ACNNNNNCTCC 2 cut(s) 564, 594
Bse3DI GCAATG 1 cut(s) 588
BseDI CCNNGG 2 cut(s) 494, 612
BseMI GCAATG 1 cut(s) 588
BseMII CTCAG 1 cut(s) 365
BseRI GAGGAG 1 cut(s) 524
BsgI GTGCAG 1 cut(s) 453
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 1 cut(s) 330
BsiHKCI CYCGRG 1 cut(s) 145
BsiSI CCGG 1 cut(s) 321
BsmAI GTCTC 3 cut(s) 317, 523, 579
BsmBI CGTCTC 1 cut(s) 523
BsnI GGCC 1 cut(s) 330
BsoBI CYCGRG 1 cut(s) 145
Bsp143I GATC 5 cut(s) 149, 274, 354, 418, 647
Bsp68I TCGCGA 1 cut(s) 273
BspACI CCGC 3 cut(s) 318, 375, 537
BspANI GGCC 1 cut(s) 330
BspCNI CTCAG 1 cut(s) 364
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 649
BspPI GGATC 3 cut(s) 413, 642, 655
BspTI CTTAAG 1 cut(s) 49
BsrDI GCAATG 1 cut(s) 588
BssECI CCNNGG 2 cut(s) 494, 612
BssMI GATC 5 cut(s) 149, 274, 354, 418, 647
BssNAI GTATAC 1 cut(s) 665
BssT1I CCWWGG 1 cut(s) 612
Bst1107I GTATAC 1 cut(s) 665
Bst4CI ACNGT 3 cut(s) 64, 446, 526
Bst6I CTCTTC 1 cut(s) 23
BstAFI CTTAAG 1 cut(s) 49
BstAPI GCANNNNNTGC 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 2 cut(s) 351, 640
BstDSI CCRYGG 1 cut(s) 494
BstFNI CGCG 1 cut(s) 273
BstKTI GATC 5 cut(s) 152, 277, 357, 421, 650
BstMAI GTCTC 3 cut(s) 317, 523, 579
BstMBI GATC 5 cut(s) 149, 274, 354, 418, 647
BstMWI GCNNNNNNNGC 5 cut(s) 175, 332, 341, 467, 476
BstNSI RCATGY 1 cut(s) 159
BstUI CGCG 1 cut(s) 273
BstX2I RGATCY 2 cut(s) 149, 647
BstYI RGATCY 2 cut(s) 149, 647
BstZ17I GTATAC 1 cut(s) 665
BsuRI GGCC 1 cut(s) 330
BtgI CCRYGG 1 cut(s) 494
BtgZI GCGATG 1 cut(s) 150
BtrI CACGTC 1 cut(s) 533
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 1 cut(s) 465
BtuMI TCGCGA 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 213
CviAII CATG 2 cut(s) 156, 332
CviJI RGCY 9 cut(s) 119, 224, 305, 330, 344, 416, 479, 485, 598
CviKI_1 RGCY 9 cut(s) 119, 224, 305, 330, 344, 416, 479, 485, 598
DdeI CTNAG 2 cut(s) 351, 640
DpnI GATC 5 cut(s) 151, 276, 356, 420, 649
DpnII GATC 5 cut(s) 149, 274, 354, 418, 647
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
EciI GGCGGA 2 cut(s) 307, 552
Eco130I CCWWGG 1 cut(s) 612
Eco47I GGWCC 1 cut(s) 213
Eco57I CTGAAG 2 cut(s) 47, 501
Eco88I CYCGRG 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 612
Esp3I CGTCTC 1 cut(s) 523
FaeI CATG 2 cut(s) 159, 335
FaiI YATR 8 cut(s) 80, 135, 157, 241, 333, 426, 606, 665
FatI CATG 2 cut(s) 155, 331
FblI GTMKAC 1 cut(s) 664
FspBI CTAG 3 cut(s) 476, 594, 660
GsuI CTGGAG 3 cut(s) 71, 96, 240
HaeIII GGCC 1 cut(s) 330
HapII CCGG 1 cut(s) 321
Hin1II CATG 2 cut(s) 159, 335
HinfI GANTC 7 cut(s) 82, 161, 207, 282, 392, 397, 683
HpaII CCGG 1 cut(s) 321
HphI GGTGA 1 cut(s) 538
Hpy166II GTNNAC 1 cut(s) 665
Hpy188I TCNGA 7 cut(s) 59, 266, 281, 339, 354, 359, 367
Hpy188III TCNNGA 7 cut(s) 16, 88, 113, 145, 219, 272, 680
Hpy8I GTNNAC 1 cut(s) 665
Hpy99I CGWCG 2 cut(s) 17, 446
HpyAV CCTTC 4 cut(s) 256, 440, 472, 638
HpyCH4III ACNGT 3 cut(s) 64, 446, 526
HpyCH4IV ACGT 2 cut(s) 12, 532
HpyCH4V TGCA 1 cut(s) 470
HpyF10VI GCNNNNNNNGC 5 cut(s) 175, 332, 341, 467, 476
HpyF3I CTNAG 2 cut(s) 351, 640
HpySE526I ACGT 2 cut(s) 12, 532
Hsp92II CATG 2 cut(s) 159, 335
Kzo9I GATC 5 cut(s) 149, 274, 354, 418, 647
LmnI GCTCC 3 cut(s) 124, 221, 323
LpnPI CCDG 6 cut(s) 101, 126, 196, 204, 312, 334
LweI GCATC 3 cut(s) 12, 63, 187
MaeI CTAG 3 cut(s) 476, 594, 660
MaeII ACGT 2 cut(s) 12, 532
MaeIII GTNAC 2 cut(s) 370, 634
MalI GATC 5 cut(s) 151, 276, 356, 420, 649
MboI GATC 5 cut(s) 149, 274, 354, 418, 647
MboII GAAGA 4 cut(s) 31, 40, 173, 208
MflI RGATCY 2 cut(s) 149, 647
MluCI AATT 2 cut(s) 75, 383
MlyI GAGTC 1 cut(s) 677
MnlI CCTC 9 cut(s) 141, 180, 195, 226, 272, 411, 432, 502, 513
MseI TTAA 2 cut(s) 50, 68
MspCI CTTAAG 1 cut(s) 49
MspI CCGG 1 cut(s) 321
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 5 cut(s) 175, 332, 341, 467, 476
NdeII GATC 5 cut(s) 149, 274, 354, 418, 647
NlaIII CATG 2 cut(s) 159, 335
NlaIV GGNNCC 1 cut(s) 649
NruI TCGCGA 1 cut(s) 273
NspI RCATGY 1 cut(s) 159
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PfeI GAWTC 6 cut(s) 82, 161, 207, 282, 392, 397
PflFI GACNNNGTC 1 cut(s) 446
PleI GAGTC 1 cut(s) 677
PpsI GAGTC 1 cut(s) 677
PshBI ATTAAT 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 649
PspPI GGNCC 1 cut(s) 213
PsuI RGATCY 2 cut(s) 149, 647
PsyI GACNNNGTC 1 cut(s) 446
RruI TCGCGA 1 cut(s) 273
SaqAI TTAA 2 cut(s) 50, 68
Sau3AI GATC 5 cut(s) 149, 274, 354, 418, 647
Sau96I GGNCC 1 cut(s) 213
SchI GAGTC 1 cut(s) 677
SfaNI GCATC 3 cut(s) 12, 63, 187
SinI GGWCC 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
SpeI ACTAGT 1 cut(s) 659
Sse9I AATT 2 cut(s) 75, 383
SsiI CCGC 3 cut(s) 318, 375, 537
SspMI CTAG 3 cut(s) 476, 594, 660
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 3 cut(s) 64, 446, 526
TaiI ACGT 2 cut(s) 15, 535
TaqI TCGA 5 cut(s) 15, 125, 205, 395, 441
TasI AATT 2 cut(s) 75, 383
TfiI GAWTC 6 cut(s) 82, 161, 207, 282, 392, 397
Tru1I TTAA 2 cut(s) 50, 68
Tru9I TTAA 2 cut(s) 50, 68
TscAI CASTG 1 cut(s) 472
TspDTI ATGAA 4 cut(s) 153, 274, 576, 593
TspGWI ACGGA 2 cut(s) 423, 483
TspRI CASTG 1 cut(s) 472
Tth111I GACNNNGTC 1 cut(s) 446
Vha464I CTTAAG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 213
VspI ATTAAT 1 cut(s) 68
XceI RCATGY 1 cut(s) 159
XmiI GTMKAC 1 cut(s) 664
XspI CTAG 3 cut(s) 476, 594, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.