FvH4_6g43920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014123
Physical Location & Seq
Reverse (-)
33928167 .. 33930848
2682 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43920.t1

Sequence Viewer

Length: 528 bp
ATGGATCATCACATAGAGGTTTTCCTGAAGCGCCTCTCCTACATCGCCCTGGTCATCGGGACCTTCACCTTCATCCTCCTCCTCCTCGAAACCCCCGACACCTGCGTCGCACCCGATTCCCCCCCAAGCCCCATCTCCGCTTCCCCCGCCACTCCTGCGACCACCGCCCCCGCCAGCACCTCCCCCTCCACAAGAAAAACAAGCGCCTCTGGTCCTCCTCCACGTGGCGCAATCAGGTCCGTTCCTTCTCCCTCTTCTTCCACTCCCTCCACCAAATCGGCCTCCTCCATAACCACTCCCAGGCCCTCTGCGTCTCCGCCGGCGCCGGCCACGAGGTCATGGCACTCTCCCAACTCGGCGTCGCTGACGTCACCGGCCTCGAGCTTCTCGAATCGCCGCCGCTCGTCAGCCGCGCCGATCCTCACAACCTGCCGTTCTTCGACGACGTGTTTGATTTCGCGTTCAGTGCTAGGTTGGAGCAGGCGCTGTTCCCGTCGAGGTTCGCGGCGGAGATGGAGAGGACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

176

Amino Acids

18.5

Weight (kDa)

11.92

Isoelectric Point (pI)

109.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16030 AT4G26730
fragaria_vesca FvH4_6g43920 FvH4_6g43920
malus_domestica MD09G1102000.v1.1 MD09G1127700.v1.1
prunus_persica Prupe.3G223700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0160701
rosa_laevigata RLG00000021234
rosa_multiflora Rmu_co8474907.1_g000001
rosa_roxburghii Rroxscaffold_2G00089470
rosa_rugosa Rorug02G0485100
rosa_samantha Rh2AG550100 Rh2BG564600 Rh2CG534500 Rh2DG573400
rosa_wichuraiana Rw2G045580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 110
AasI GACNNNNNNGTC 1 cut(s) 104
AatII GACGTC 1 cut(s) 371
Acc36I ACCTGC 2 cut(s) 110, 437
AccB1I GGYRCC 1 cut(s) 322
AccBSI CCGCTC 1 cut(s) 402
AccII CGCG 3 cut(s) 413, 460, 505
AclWI GGATC 2 cut(s) 12, 412
AcoI YGGCCR 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 47
AcvI CACGTG 1 cut(s) 224
AcyI GRCGYC 3 cut(s) 323, 359, 368
AfiI CCNNNNNNNGG 2 cut(s) 224, 300
AflIII ACRYGT 1 cut(s) 446
AjiI CACGTC 1 cut(s) 447
AjnI CCWGG 2 cut(s) 48, 299
AluBI AGCT 1 cut(s) 384
AluI AGCT 1 cut(s) 384
Alw26I GTCTC 1 cut(s) 318
AlwI GGATC 2 cut(s) 12, 412
AlwNI CAGNNNCTG 1 cut(s) 486
Ama87I CYCGRG 1 cut(s) 379
AoxI GGCC 4 cut(s) 279, 302, 327, 375
ArsI GACNNNNNNTTYG 2 cut(s) 433, 465
AspLEI GCGC 6 cut(s) 33, 206, 230, 325, 415, 486
AspS9I GGNCC 4 cut(s) 60, 212, 237, 303
AsuHPI GGTGA 2 cut(s) 58, 363
AvaI CYCGRG 1 cut(s) 379
AvaII GGWCC 3 cut(s) 60, 212, 237
BanI GGYRCC 1 cut(s) 322
BauI CACGAG 1 cut(s) 331
BbrPI CACGTG 1 cut(s) 224
BccI CCATC 2 cut(s) 140, 507
BceAI ACGGC 1 cut(s) 417
BciT130I CCWGG 2 cut(s) 50, 301
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 1 cut(s) 470
BfoI RGCGCY 4 cut(s) 34, 207, 326, 487
BfuAI ACCTGC 2 cut(s) 110, 437
BisI GCNGC 4 cut(s) 397, 400, 411, 506
BlsI GCNGC 4 cut(s) 398, 401, 412, 507
Bme1390I CCNGG 2 cut(s) 50, 301
Bme18I GGWCC 3 cut(s) 60, 212, 237
BmeT110I CYCGRG 1 cut(s) 379
BmgBI CACGTC 1 cut(s) 447
BmgT120I GGNCC 4 cut(s) 60, 212, 237, 303
BmiI GGNNCC 2 cut(s) 61, 324
BmrFI CCNGG 2 cut(s) 50, 301
BsaAI YACGTR 1 cut(s) 224
BsaHI GRCGYC 3 cut(s) 323, 359, 368
BsaJI CCNNGG 2 cut(s) 48, 299
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 300
Bse118I RCCGGY 3 cut(s) 319, 325, 373
BseBI CCWGG 2 cut(s) 50, 301
BseDI CCNNGG 2 cut(s) 48, 299
BseGI GGATG 1 cut(s) 72
BseLI CCNNNNNNNGG 2 cut(s) 224, 300
BseRI GAGGAG 5 cut(s) 68, 71, 74, 207, 274
Bsh1236I CGCG 3 cut(s) 413, 460, 505
BshFI GGCC 4 cut(s) 281, 304, 329, 377
BshNI GGYRCC 1 cut(s) 322
BsiHKCI CYCGRG 1 cut(s) 379
BsiSI CCGG 3 cut(s) 320, 326, 374
BslFI GGGAC 1 cut(s) 73
BslI CCNNNNNNNGG 2 cut(s) 224, 300
BsmAI GTCTC 1 cut(s) 318
BsmBI CGTCTC 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 73
BsnI GGCC 4 cut(s) 281, 304, 329, 377
BsoBI CYCGRG 1 cut(s) 379
Bsp143I GATC 2 cut(s) 4, 417
BspANI GGCC 4 cut(s) 281, 304, 329, 377
BspFNI CGCG 3 cut(s) 413, 460, 505
BspLI GGNNCC 2 cut(s) 61, 324
BspMI ACCTGC 2 cut(s) 110, 437
BspPI GGATC 2 cut(s) 12, 412
BspT107I GGYRCC 1 cut(s) 322
BsrBI CCGCTC 1 cut(s) 402
BsrFI RCCGGY 3 cut(s) 319, 325, 373
BssAI RCCGGY 3 cut(s) 319, 325, 373
BssECI CCNNGG 2 cut(s) 48, 299
BssMI GATC 2 cut(s) 4, 417
BssNI GRCGYC 3 cut(s) 323, 359, 368
BssSI CACGAG 1 cut(s) 331
Bst2BI CACGAG 1 cut(s) 331
Bst2UI CCWGG 2 cut(s) 50, 301
Bst4CI ACNGT 1 cut(s) 525
Bst6I CTCTTC 1 cut(s) 259
BstACI GRCGYC 3 cut(s) 323, 359, 368
BstBAI YACGTR 1 cut(s) 224
BstC8I GCNNGC 4 cut(s) 175, 321, 327, 482
BstF5I GGATG 1 cut(s) 72
BstFNI CGCG 3 cut(s) 413, 460, 505
BstH2I RGCGCY 4 cut(s) 34, 207, 326, 487
BstHHI GCGC 6 cut(s) 33, 206, 230, 325, 415, 486
BstKTI GATC 2 cut(s) 7, 420
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 2 cut(s) 4, 417
BstMWI GCNNNNNNNGC 4 cut(s) 146, 155, 164, 466
BstNI CCWGG 2 cut(s) 50, 301
BstSCI CCNGG 2 cut(s) 48, 299
BstUI CGCG 3 cut(s) 413, 460, 505
BsuRI GGCC 4 cut(s) 281, 304, 329, 377
BtgZI GCGATG 1 cut(s) 28
BtrI CACGTC 1 cut(s) 447
BtsCI GGATG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 471
BveI ACCTGC 2 cut(s) 110, 437
Cac8I GCNNGC 4 cut(s) 175, 321, 327, 482
CaiI CAGNNNCTG 1 cut(s) 486
CfoI GCGC 6 cut(s) 33, 206, 230, 325, 415, 486
Cfr10I RCCGGY 3 cut(s) 319, 325, 373
Cfr13I GGNCC 4 cut(s) 60, 212, 237, 303
CseI GACGC 3 cut(s) 94, 300, 348
CviAII CATG 1 cut(s) 339
CviJI RGCY 7 cut(s) 129, 281, 304, 329, 377, 384, 410
CviKI_1 RGCY 7 cut(s) 129, 281, 304, 329, 377, 384, 410
DinI GGCGCC 1 cut(s) 324
DpnI GATC 2 cut(s) 6, 419
DpnII GATC 2 cut(s) 4, 417
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
EaeI YGGCCR 1 cut(s) 327
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
EciI GGCGGA 2 cut(s) 306, 523
Eco47I GGWCC 3 cut(s) 60, 212, 237
Eco57I CTGAAG 1 cut(s) 47
Eco72I CACGTG 1 cut(s) 224
Eco88I CYCGRG 1 cut(s) 379
EcoO109I RGGNCCY 2 cut(s) 60, 303
EcoRII CCWGG 2 cut(s) 48, 299
EgeI GGCGCC 1 cut(s) 324
EheI GGCGCC 1 cut(s) 324
Esp3I CGTCTC 1 cut(s) 318
FaeI CATG 1 cut(s) 342
FaiI YATR 3 cut(s) 14, 290, 340
FaqI GGGAC 1 cut(s) 73
FatI CATG 1 cut(s) 338
FauI CCCGC 2 cut(s) 154, 178
Fnu4HI GCNGC 4 cut(s) 397, 400, 411, 506
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 4 cut(s) 397, 400, 411, 506
FspBI CTAG 1 cut(s) 470
GlaI GCGC 6 cut(s) 32, 205, 229, 324, 414, 485
GluI GCNGC 4 cut(s) 397, 400, 411, 506
HaeII RGCGCY 4 cut(s) 34, 207, 326, 487
HaeIII GGCC 4 cut(s) 281, 304, 329, 377
HapII CCGG 3 cut(s) 320, 326, 374
HgaI GACGC 3 cut(s) 94, 300, 348
HhaI GCGC 6 cut(s) 33, 206, 230, 325, 415, 486
Hin1I GRCGYC 3 cut(s) 323, 359, 368
Hin1II CATG 1 cut(s) 342
Hin6I GCGC 6 cut(s) 31, 204, 228, 323, 413, 484
HinP1I GCGC 6 cut(s) 31, 204, 228, 323, 413, 484
HinfI GANTC 2 cut(s) 116, 391
HpaII CCGG 3 cut(s) 320, 326, 374
HphI GGTGA 2 cut(s) 58, 363
Hpy188III TCNNGA 3 cut(s) 25, 58, 388
Hpy99I CGWCG 5 cut(s) 110, 364, 445, 448, 498
HpyAV CCTTC 3 cut(s) 73, 79, 255
HpyCH4III ACNGT 1 cut(s) 525
HpyCH4IV ACGT 3 cut(s) 223, 368, 446
HpyF10VI GCNNNNNNNGC 4 cut(s) 146, 155, 164, 466
HpySE526I ACGT 3 cut(s) 223, 368, 446
Hsp92I GRCGYC 3 cut(s) 323, 359, 368
Hsp92II CATG 1 cut(s) 342
HspAI GCGC 6 cut(s) 31, 204, 228, 323, 413, 484
KasI GGCGCC 1 cut(s) 322
KroI GCCGGC 2 cut(s) 319, 325
KroNI GCCGGC 2 cut(s) 321, 327
Kzo9I GATC 2 cut(s) 4, 417
LmnI GCTCC 1 cut(s) 477
MaeI CTAG 1 cut(s) 470
MaeII ACGT 3 cut(s) 223, 368, 446
MaeIII GTNAC 1 cut(s) 369
MalI GATC 2 cut(s) 6, 419
MbiI CCGCTC 1 cut(s) 402
MboI GATC 2 cut(s) 4, 417
MboII GAAGA 3 cut(s) 246, 249, 429
Mly113I GGCGCC 1 cut(s) 323
MmeI TCCRAC 1 cut(s) 455
MreI CGCCGGCG 1 cut(s) 319
MroNI GCCGGC 2 cut(s) 319, 325
MspI CCGG 3 cut(s) 320, 326, 374
MspR9I CCNGG 2 cut(s) 50, 301
MvaI CCWGG 2 cut(s) 50, 301
MvnI CGCG 3 cut(s) 413, 460, 505
MwoI GCNNNNNNNGC 4 cut(s) 146, 155, 164, 466
NaeI GCCGGC 2 cut(s) 321, 327
NarI GGCGCC 1 cut(s) 323
NdeII GATC 2 cut(s) 4, 417
NgoMIV GCCGGC 2 cut(s) 319, 325
NlaIII CATG 1 cut(s) 342
NlaIV GGNNCC 2 cut(s) 61, 324
NmeAIII GCCGAG 1 cut(s) 335
NmuCI GTSAC 1 cut(s) 369
PaeR7I CTCGAG 1 cut(s) 379
PaqCI CACCTGC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 386
PdiI GCCGGC 2 cut(s) 321, 327
PfeI GAWTC 2 cut(s) 116, 391
PkrI GCNGC 4 cut(s) 398, 401, 412, 507
PluTI GGCGCC 1 cut(s) 326
PmaCI CACGTG 1 cut(s) 224
PmlI CACGTG 1 cut(s) 224
Ppu21I YACGTR 1 cut(s) 224
PpuMI RGGWCCY 1 cut(s) 60
Psp5II RGGWCCY 1 cut(s) 60
Psp6I CCWGG 2 cut(s) 48, 299
PspCI CACGTG 1 cut(s) 224
PspGI CCWGG 2 cut(s) 48, 299
PspN4I GGNNCC 2 cut(s) 61, 324
PspPI GGNCC 4 cut(s) 60, 212, 237, 303
PspPPI RGGWCCY 1 cut(s) 60
PspXI VCTCGAGB 1 cut(s) 379
PstNI CAGNNNCTG 1 cut(s) 486
SatI GCNGC 4 cut(s) 397, 400, 411, 506
Sau3AI GATC 2 cut(s) 4, 417
Sau96I GGNCC 4 cut(s) 60, 212, 237, 303
ScrFI CCNGG 2 cut(s) 50, 301
SfoI GGCGCC 1 cut(s) 324
Sfr274I CTCGAG 1 cut(s) 379
SgrAI CRCCGGYG 1 cut(s) 319
SinI GGWCC 3 cut(s) 60, 212, 237
SlaI CTCGAG 1 cut(s) 379
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
SspDI GGCGCC 1 cut(s) 322
SspMI CTAG 1 cut(s) 470
StyD4I CCNGG 2 cut(s) 48, 299
TaaI ACNGT 1 cut(s) 525
TaiI ACGT 3 cut(s) 226, 371, 449
TaqI TCGA 5 cut(s) 87, 380, 389, 440, 496
TauI GCSGC 4 cut(s) 399, 402, 413, 508
TfiI GAWTC 2 cut(s) 116, 391
TscAI CASTG 1 cut(s) 471
TseFI GTSAC 1 cut(s) 369
Tsp45I GTSAC 1 cut(s) 369
TspDTI ATGAA 1 cut(s) 61
TspGWI ACGGA 1 cut(s) 229
TspRI CASTG 1 cut(s) 471
VpaK11BI GGWCC 3 cut(s) 60, 212, 237
XhoI CTCGAG 1 cut(s) 379
XspI CTAG 1 cut(s) 470
ZraI GACGTC 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.