MD09G1102000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0014123
Physical Location & Seq
Forward (+)
7469103 .. 7470763
1661 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1102000.v1.1.491

Sequence Viewer

Length: 621 bp
ATGGAGAGGCACATCGAGATTTTCCTGAAGAGGCTCTCCTACGTCTCCATACTCATCGGCACCGTCGCCTTCGTCTTCCTCCTCCTCAAAACCCCCGACACCTGCGTCGCGCCGGACTCTCCCCCGAAGCCCCACCTCCGCTTCCCCAAATCCTCCTGCGACGCCTCGCCGCGCGTCATCCTCCCTCTCCACAAGAAGAACAAGCGCCTCTGGTCCACCAAGACCTGGCAGAACAAGGTCCACTCCTTCTCCAACTTCTTTCGCGCATTTTATCAAATGGGTCTCCTGCACAACGAGTCCAAGGTCCTCTGCGTCTCCGCCGGCGCCGGCCACGAGGTCATGGCGCTGACCCAGTTGGGCGTTGCCGACGTCACCGGAATTGAGCTCCTCGAGTCGCCTCCGCTGGTGAGCCGGGCGGATCCCCATAACTTGCCTTACTTCGATAATGTGTTTAATTTGGGATTTAGTGCGCATTTCGCGGAGGCGTTGTTTCCGAACCGGTTCGCTGCGGAGATGGAGAGGACGGTGAGGGCCGGCGGGGTGTGTGTGGTGGTTGTGGACGAATGTGGGGATGAGGAGGTTAGGGAGATTGTGGATTTGTTTACGAATTCGAGGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

207

Amino Acids

23.09

Weight (kDa)

7.08

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16030 AT4G26730
fragaria_vesca FvH4_6g43920 FvH4_6g43920
malus_domestica MD09G1102000.v1.1 MD09G1127700.v1.1
prunus_persica Prupe.3G223700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0160701
rosa_laevigata RLG00000021234
rosa_multiflora Rmu_co8474907.1_g000001
rosa_roxburghii Rroxscaffold_2G00089470
rosa_rugosa Rorug02G0485100
rosa_samantha Rh2AG550100 Rh2BG564600 Rh2CG534500 Rh2DG573400
rosa_wichuraiana Rw2G045580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 110
AasI GACNNNNNNGTC 1 cut(s) 104
AatII GACGTC 1 cut(s) 372
Acc16I TGCGCA 1 cut(s) 471
Acc36I ACCTGC 1 cut(s) 110
AccB1I GGYRCC 2 cut(s) 59, 323
AccB7I CCANNNNNTGG 1 cut(s) 225
AccII CGCG 5 cut(s) 110, 172, 174, 264, 479
AciI CCGC 8 cut(s) 139, 170, 318, 401, 416, 479, 509, 537
AclWI GGATC 2 cut(s) 413, 426
AcoI YGGCCR 1 cut(s) 328
AcsI RAATTY 1 cut(s) 607
AcuI CTGAAG 1 cut(s) 47
AcyI GRCGYC 3 cut(s) 162, 324, 369
AfiI CCNNNNNNNGG 1 cut(s) 225
AgeI ACCGGT 1 cut(s) 498
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 1 cut(s) 385
AluI AGCT 1 cut(s) 385
Alw21I GWGCWC 1 cut(s) 387
Alw26I GTCTC 3 cut(s) 49, 287, 319
AlwI GGATC 2 cut(s) 413, 426
Ama87I CYCGRG 1 cut(s) 389
AoxI GGCC 2 cut(s) 328, 531
ApeKI GCWGC 1 cut(s) 506
ApoI RAATTY 1 cut(s) 607
AsiGI ACCGGT 1 cut(s) 498
Asp700I GAANNNNTTC 1 cut(s) 500
AspLEI GCGC 7 cut(s) 112, 174, 207, 266, 326, 346, 472
AspS9I GGNCC 4 cut(s) 213, 238, 304, 531
AsuC2I CCSGG 1 cut(s) 413
AsuHPI GGTGA 3 cut(s) 364, 418, 538
AvaI CYCGRG 1 cut(s) 389
AvaII GGWCC 3 cut(s) 213, 238, 304
BamHI GGATCC 1 cut(s) 418
BanI GGYRCC 2 cut(s) 59, 323
BanII GRGCYC 1 cut(s) 387
BauI CACGAG 1 cut(s) 332
BbsI GAAGAC 1 cut(s) 67
Bbv12I GWGCWC 1 cut(s) 387
BbvI GCAGC 1 cut(s) 493
BccI CCATC 1 cut(s) 508
BciT130I CCWGG 1 cut(s) 226
BcnI CCSGG 1 cut(s) 413
BcoDI GTCTC 3 cut(s) 49, 287, 319
BfoI RGCGCY 3 cut(s) 208, 327, 347
BfuAI ACCTGC 1 cut(s) 110
BisI GCNGC 2 cut(s) 170, 507
BlsI GCNGC 2 cut(s) 171, 508
Bme1390I CCNGG 2 cut(s) 226, 413
Bme18I GGWCC 3 cut(s) 213, 238, 304
BmeT110I CYCGRG 1 cut(s) 389
BmgT120I GGNCC 4 cut(s) 213, 238, 304, 531
BmiI GGNNCC 3 cut(s) 61, 325, 420
BmrFI CCNGG 2 cut(s) 226, 413
BmrI ACTGGG 1 cut(s) 346
BmuI ACTGGG 1 cut(s) 346
BpiI GAAGAC 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 413
BsaHI GRCGYC 3 cut(s) 162, 324, 369
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 300
BsaWI WCCGGW 2 cut(s) 374, 498
BsaXI ACNNNNNCTCC 4 cut(s) 233, 263, 473, 503
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse118I RCCGGY 4 cut(s) 320, 326, 498, 533
Bse1I ACTGG 1 cut(s) 352
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 2 cut(s) 177, 577
BseLI CCNNNNNNNGG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 352
BseRI GAGGAG 4 cut(s) 71, 74, 377, 590
BseXI GCAGC 1 cut(s) 493
BsgI GTGCAG 1 cut(s) 272
Bsh1236I CGCG 5 cut(s) 110, 172, 174, 264, 479
BshFI GGCC 2 cut(s) 330, 533
BshNI GGYRCC 2 cut(s) 59, 323
BshTI ACCGGT 1 cut(s) 498
BsiHKAI GWGCWC 1 cut(s) 387
BsiHKCI CYCGRG 1 cut(s) 389
BsiSI CCGG 7 cut(s) 113, 321, 327, 375, 412, 499, 534
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 3 cut(s) 49, 287, 319
BsmBI CGTCTC 2 cut(s) 49, 319
BsnI GGCC 2 cut(s) 330, 533
Bso31I GGTCTC 1 cut(s) 287
BsoBI CYCGRG 1 cut(s) 389
Bsp1286I GDGCHC 1 cut(s) 387
Bsp143I GATC 1 cut(s) 418
BspACI CCGC 8 cut(s) 139, 170, 318, 401, 416, 479, 509, 537
BspANI GGCC 2 cut(s) 330, 533
BspFNI CGCG 5 cut(s) 110, 172, 174, 264, 479
BspLI GGNNCC 3 cut(s) 61, 325, 420
BspMI ACCTGC 1 cut(s) 110
BspPI GGATC 2 cut(s) 413, 426
BspT107I GGYRCC 2 cut(s) 59, 323
BspTNI GGTCTC 1 cut(s) 287
BsrFI RCCGGY 4 cut(s) 320, 326, 498, 533
BsrI ACTGG 1 cut(s) 352
BssAI RCCGGY 4 cut(s) 320, 326, 498, 533
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 1 cut(s) 418
BssNI GRCGYC 3 cut(s) 162, 324, 369
BssSI CACGAG 1 cut(s) 332
BssT1I CCWWGG 1 cut(s) 300
Bst2BI CACGAG 1 cut(s) 332
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 2 cut(s) 64, 526
Bst6I CTCTTC 1 cut(s) 23
BstACI GRCGYC 3 cut(s) 162, 324, 369
BstC8I GCNNGC 3 cut(s) 322, 328, 535
BstF5I GGATG 2 cut(s) 177, 577
BstFNI CGCG 5 cut(s) 110, 172, 174, 264, 479
BstH2I RGCGCY 3 cut(s) 208, 327, 347
BstHHI GCGC 7 cut(s) 112, 174, 207, 266, 326, 346, 472
BstKTI GATC 1 cut(s) 421
BstMAI GTCTC 3 cut(s) 49, 287, 319
BstMBI GATC 1 cut(s) 418
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 2 cut(s) 224, 411
BstUI CGCG 5 cut(s) 110, 172, 174, 264, 479
BstV1I GCAGC 1 cut(s) 493
BstV2I GAAGAC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BsuRI GGCC 2 cut(s) 330, 533
BtsCI GGATG 2 cut(s) 177, 577
BveI ACCTGC 1 cut(s) 110
Cac8I GCNNGC 3 cut(s) 322, 328, 535
CfoI GCGC 7 cut(s) 112, 174, 207, 266, 326, 346, 472
Cfr10I RCCGGY 4 cut(s) 320, 326, 498, 533
Cfr13I GGNCC 4 cut(s) 213, 238, 304, 531
CseI GACGC 4 cut(s) 94, 163, 170, 301
CspAI ACCGGT 1 cut(s) 498
CviAII CATG 1 cut(s) 340
CviJI RGCY 6 cut(s) 34, 130, 330, 385, 411, 533
CviKI_1 RGCY 6 cut(s) 34, 130, 330, 385, 411, 533
DinI GGCGCC 1 cut(s) 325
DpnI GATC 1 cut(s) 420
DpnII GATC 1 cut(s) 418
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
EaeI YGGCCR 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
EciI GGCGGA 2 cut(s) 307, 431
Ecl136II GAGCTC 1 cut(s) 385
Eco130I CCWWGG 1 cut(s) 300
Eco24I GRGCYC 1 cut(s) 387
Eco31I GGTCTC 1 cut(s) 287
Eco47I GGWCC 3 cut(s) 213, 238, 304
Eco53kI GAGCTC 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 47
Eco88I CYCGRG 1 cut(s) 389
EcoICRI GAGCTC 1 cut(s) 385
EcoO109I RGGNCCY 1 cut(s) 304
EcoRI GAATTC 1 cut(s) 607
EcoRII CCWGG 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 300
EcoT38I GRGCYC 1 cut(s) 387
EgeI GGCGCC 1 cut(s) 325
EheI GGCGCC 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 300
Esp3I CGTCTC 2 cut(s) 49, 319
FaeI CATG 1 cut(s) 343
FaiI YATR 3 cut(s) 50, 341, 426
FatI CATG 1 cut(s) 339
FauI CCCGC 1 cut(s) 530
Fnu4HI GCNGC 2 cut(s) 170, 507
FokI GGATG 2 cut(s) 164, 584
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 2 cut(s) 170, 507
FspAI RTGCGCAY 1 cut(s) 471
FspI TGCGCA 1 cut(s) 471
GlaI GCGC 7 cut(s) 111, 173, 206, 265, 325, 345, 471
GluI GCNGC 2 cut(s) 170, 507
HaeII RGCGCY 3 cut(s) 208, 327, 347
HaeIII GGCC 2 cut(s) 330, 533
HapII CCGG 7 cut(s) 113, 321, 327, 375, 412, 499, 534
HgaI GACGC 4 cut(s) 94, 163, 170, 301
HhaI GCGC 7 cut(s) 112, 174, 207, 266, 326, 346, 472
Hin1I GRCGYC 3 cut(s) 162, 324, 369
Hin1II CATG 1 cut(s) 343
Hin6I GCGC 7 cut(s) 110, 172, 205, 264, 324, 344, 470
HinP1I GCGC 7 cut(s) 110, 172, 205, 264, 324, 344, 470
HinfI GANTC 3 cut(s) 116, 296, 392
HpaII CCGG 7 cut(s) 113, 321, 327, 375, 412, 499, 534
HphI GGTGA 3 cut(s) 364, 418, 538
Hpy166II GTNNAC 4 cut(s) 216, 241, 559, 603
Hpy188I TCNGA 1 cut(s) 495
Hpy188III TCNNGA 2 cut(s) 16, 25
Hpy8I GTNNAC 4 cut(s) 216, 241, 559, 603
Hpy99I CGWCG 4 cut(s) 68, 110, 164, 371
HpyAV CCTTC 2 cut(s) 79, 256
HpyCH4III ACNGT 2 cut(s) 64, 526
HpyCH4IV ACGT 2 cut(s) 42, 369
HpyCH4V TGCA 1 cut(s) 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpySE526I ACGT 2 cut(s) 42, 369
Hsp92I GRCGYC 3 cut(s) 162, 324, 369
Hsp92II CATG 1 cut(s) 343
HspAI GCGC 7 cut(s) 110, 172, 205, 264, 324, 344, 470
KasI GGCGCC 1 cut(s) 323
KroI GCCGGC 3 cut(s) 320, 326, 533
KroNI GCCGGC 3 cut(s) 322, 328, 535
Kzo9I GATC 1 cut(s) 418
LmnI GCTCC 1 cut(s) 390
Lsp1109I GCAGC 1 cut(s) 493
MaeII ACGT 2 cut(s) 42, 369
MaeIII GTNAC 1 cut(s) 370
MalI GATC 1 cut(s) 420
MboI GATC 1 cut(s) 418
MboII GAAGA 3 cut(s) 40, 67, 208
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 1 cut(s) 387
MluCI AATT 3 cut(s) 378, 454, 607
Mly113I GGCGCC 1 cut(s) 324
MlyI GAGTC 3 cut(s) 110, 305, 401
MmeI TCCRAC 1 cut(s) 276
MreI CGCCGGCG 1 cut(s) 320
MroNI GCCGGC 3 cut(s) 320, 326, 533
MroXI GAANNNNTTC 1 cut(s) 500
MseI TTAA 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 403
MspI CCGG 7 cut(s) 113, 321, 327, 375, 412, 499, 534
MspR9I CCNGG 2 cut(s) 226, 413
MvaI CCWGG 1 cut(s) 226
MvnI CGCG 5 cut(s) 110, 172, 174, 264, 479
MwoI GCNNNNNNNGC 1 cut(s) 476
NaeI GCCGGC 3 cut(s) 322, 328, 535
NarI GGCGCC 1 cut(s) 324
NciI CCSGG 1 cut(s) 413
NdeII GATC 1 cut(s) 418
NgoMIV GCCGGC 3 cut(s) 320, 326, 533
NlaIII CATG 1 cut(s) 343
NlaIV GGNNCC 3 cut(s) 61, 325, 420
NmuCI GTSAC 1 cut(s) 370
NsbI TGCGCA 1 cut(s) 471
PaeR7I CTCGAG 1 cut(s) 389
PaqCI CACCTGC 1 cut(s) 110
PdiI GCCGGC 3 cut(s) 322, 328, 535
PdmI GAANNNNTTC 1 cut(s) 500
PflMI CCANNNNNTGG 1 cut(s) 225
PinAI ACCGGT 1 cut(s) 498
PkrI GCNGC 2 cut(s) 171, 508
PleI GAGTC 3 cut(s) 110, 304, 400
PluTI GGCGCC 1 cut(s) 327
PpsI GAGTC 3 cut(s) 110, 304, 400
PpuMI RGGWCCY 1 cut(s) 304
Psp124BI GAGCTC 1 cut(s) 387
Psp5II RGGWCCY 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 3 cut(s) 61, 325, 420
PspPI GGNCC 4 cut(s) 213, 238, 304, 531
PspPPI RGGWCCY 1 cut(s) 304
PspXI VCTCGAGB 1 cut(s) 389
PsuI RGATCY 1 cut(s) 418
SacI GAGCTC 1 cut(s) 387
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 2 cut(s) 170, 507
Sau3AI GATC 1 cut(s) 418
Sau96I GGNCC 4 cut(s) 213, 238, 304, 531
SchI GAGTC 3 cut(s) 110, 305, 401
ScrFI CCNGG 2 cut(s) 226, 413
SduI GDGCHC 1 cut(s) 387
SfoI GGCGCC 1 cut(s) 325
Sfr274I CTCGAG 1 cut(s) 389
SgrAI CRCCGGYG 1 cut(s) 320
SinI GGWCC 3 cut(s) 213, 238, 304
SlaI CTCGAG 1 cut(s) 389
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
Sse9I AATT 3 cut(s) 378, 454, 607
SsiI CCGC 8 cut(s) 139, 170, 318, 401, 416, 479, 509, 537
SspDI GGCGCC 1 cut(s) 323
SstI GAGCTC 1 cut(s) 387
StyD4I CCNGG 2 cut(s) 224, 411
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 2 cut(s) 64, 526
TaiI ACGT 2 cut(s) 45, 372
TaqI TCGA 4 cut(s) 15, 390, 441, 611
TasI AATT 3 cut(s) 378, 454, 607
TauI GCSGC 1 cut(s) 172
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 1 cut(s) 370
Van91I CCANNNNNTGG 1 cut(s) 225
VpaK11BI GGWCC 3 cut(s) 213, 238, 304
XapI RAATTY 1 cut(s) 607
XhoI CTCGAG 1 cut(s) 389
XmnI GAANNNNTTC 1 cut(s) 500
ZraI GACGTC 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.