AT4G26730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014123
Physical Location & Seq
Forward (+)
13472579 .. 13473309
731 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G26730.1

Sequence Viewer

Length: 627 bp
ATGGAGAGAAACGTTGAGAAGATGCTGAACAGAGTTTCAGTCGTGTTCTTAAGCATCGGAACAGTGTTAATGCATCTTCCTCTCCCAAAGAAGAACGCTCGAATCTGGTTCTCTGGAGCTTGGAAATCGCGTCTATCCTCCTTCTCTACCTACTTCCTCCGATTTCGCGATCTCGGATTCATTCAAAATCACACCAAAGCTCTCTGTCTTTCCGACGGAGCAGGCCATGCTCCGATGGCTCTTTCTCAGATCGGATTATCCGACGTTACCGCAGTTGAATTGGTTGATTCGATTCCTCTTGTGAAAAGAGCTGATCCTCATAACCTTCCGTTTTTCGACCGTGTCTTTGATTTTGTCTTTACTGCACATCTAGCTGAAGCTCTGTTTCCGTGGCGGTTCGTGGAGGAGATGGAGAGGACGGTGCGACGCGGTGGGTTTTGTGTGGTTGCGGTTGATGAATGTAGTGGAGATGATGTTAGAGACATTGCTAGGTTTTTTCATAATTCCAAGATCGTTGATGTTGCTAATGTAACCTTAGAAAGAGTCAAAAGAACTAGTATACTATTCAAACTTCAAGACTCTAAAAGGACTAGTATACTATTCAAAGTTCAAGACTCTCTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

208

Amino Acids

23.68

Weight (kDa)

9.3

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_11 PF08241 101 - 149 2.3e-06 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16030 AT4G26730
fragaria_vesca FvH4_6g43920 FvH4_6g43920
malus_domestica MD09G1102000.v1.1 MD09G1127700.v1.1
prunus_persica Prupe.3G223700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0160701
rosa_laevigata RLG00000021234
rosa_multiflora Rmu_co8474907.1_g000001
rosa_roxburghii Rroxscaffold_2G00089470
rosa_rugosa Rorug02G0485100
rosa_samantha Rh2AG550100 Rh2BG564600 Rh2CG534500 Rh2DG573400
rosa_wichuraiana Rw2G045580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 559, 595
AccII CGCG 3 cut(s) 130, 168, 429
AciI CCGC 4 cut(s) 270, 394, 429, 449
AclI AACGTT 1 cut(s) 12
AclWI GGATC 1 cut(s) 308
AcuI CTGAAG 1 cut(s) 396
AflII CTTAAG 1 cut(s) 49
AgsI TTSAA 6 cut(s) 185, 278, 568, 575, 604, 611
AhlI ACTAGT 2 cut(s) 554, 590
AluBI AGCT 5 cut(s) 119, 200, 311, 374, 380
AluI AGCT 5 cut(s) 119, 200, 311, 374, 380
Alw26I GTCTC 1 cut(s) 474
AlwI GGATC 1 cut(s) 308
AoxI GGCC 1 cut(s) 223
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
BccI CCATC 2 cut(s) 229, 403
BcoDI GTCTC 1 cut(s) 474
BcuI ACTAGT 2 cut(s) 554, 590
BfaI CTAG 4 cut(s) 371, 489, 555, 591
BfrI CTTAAG 1 cut(s) 49
BmsI GCATC 3 cut(s) 12, 63, 82
BpmI CTGGAG 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 389
BsaXI ACNNNNNCTCC 2 cut(s) 459, 489
Bse3DI GCAATG 1 cut(s) 483
BseDI CCNNGG 1 cut(s) 389
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 1 cut(s) 260
BseRI GAGGAG 1 cut(s) 419
BsgI GTGCAG 1 cut(s) 348
Bsh1236I CGCG 3 cut(s) 130, 168, 429
Bsh1285I CGRYCG 1 cut(s) 340
BshFI GGCC 1 cut(s) 225
BsiEI CGRYCG 1 cut(s) 340
BsmAI GTCTC 1 cut(s) 474
BsnI GGCC 1 cut(s) 225
Bsp143I GATC 4 cut(s) 169, 249, 313, 510
Bsp68I TCGCGA 1 cut(s) 168
BspACI CCGC 4 cut(s) 270, 394, 429, 449
BspANI GGCC 1 cut(s) 225
BspCNI CTCAG 1 cut(s) 259
BspFNI CGCG 3 cut(s) 130, 168, 429
BspHI TCATGA 1 cut(s) 623
BspPI GGATC 1 cut(s) 308
BspTI CTTAAG 1 cut(s) 49
BsrDI GCAATG 1 cut(s) 483
BssECI CCNNGG 1 cut(s) 389
BssMI GATC 4 cut(s) 169, 249, 313, 510
BssNAI GTATAC 2 cut(s) 560, 596
Bst1107I GTATAC 2 cut(s) 560, 596
Bst4CI ACNGT 3 cut(s) 64, 341, 421
BstAFI CTTAAG 1 cut(s) 49
BstAPI GCANNNNNTGC 1 cut(s) 227
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 2 cut(s) 246, 535
BstDSI CCRYGG 1 cut(s) 389
BstFNI CGCG 3 cut(s) 130, 168, 429
BstKTI GATC 4 cut(s) 172, 252, 316, 513
BstMAI GTCTC 1 cut(s) 474
BstMBI GATC 4 cut(s) 169, 249, 313, 510
BstMCI CGRYCG 1 cut(s) 340
BstMWI GCNNNNNNNGC 3 cut(s) 227, 236, 371
BstUI CGCG 3 cut(s) 130, 168, 429
BstZ17I GTATAC 2 cut(s) 560, 596
BsuRI GGCC 1 cut(s) 225
BtgI CCRYGG 1 cut(s) 389
BtsIMutI CAGTG 1 cut(s) 69
BtuMI TCGCGA 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 223
CciI TCATGA 1 cut(s) 623
CseI GACGC 2 cut(s) 119, 435
CviAII CATG 2 cut(s) 227, 624
CviJI RGCY 7 cut(s) 119, 200, 225, 239, 311, 374, 380
CviKI_1 RGCY 7 cut(s) 119, 200, 225, 239, 311, 374, 380
DdeI CTNAG 2 cut(s) 246, 535
DpnI GATC 4 cut(s) 171, 251, 315, 512
DpnII GATC 4 cut(s) 169, 249, 313, 510
Eco57I CTGAAG 1 cut(s) 396
EcoT22I ATGCAT 1 cut(s) 75
FaeI CATG 2 cut(s) 230, 627
FaiI YATR 6 cut(s) 228, 321, 501, 560, 596, 625
FalI AAGNNNNNCTT 1 cut(s) 603
FatI CATG 2 cut(s) 226, 623
FblI GTMKAC 2 cut(s) 559, 595
FspBI CTAG 4 cut(s) 371, 489, 555, 591
GsuI CTGGAG 1 cut(s) 135
HaeIII GGCC 1 cut(s) 225
HgaI GACGC 2 cut(s) 119, 435
Hin1II CATG 2 cut(s) 230, 627
HinfI GANTC 7 cut(s) 102, 177, 287, 292, 543, 578, 614
Hpy166II GTNNAC 2 cut(s) 560, 596
Hpy188I TCNGA 8 cut(s) 59, 161, 176, 214, 234, 249, 254, 262
Hpy188III TCNNGA 5 cut(s) 114, 167, 575, 611, 624
Hpy8I GTNNAC 2 cut(s) 560, 596
Hpy99I CGWCG 3 cut(s) 218, 266, 429
HpyAV CCTTC 2 cut(s) 151, 335
HpyCH4III ACNGT 3 cut(s) 64, 341, 421
HpyCH4IV ACGT 2 cut(s) 12, 264
HpyCH4V TGCA 2 cut(s) 73, 365
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 236, 371
HpyF3I CTNAG 2 cut(s) 246, 535
HpySE526I ACGT 2 cut(s) 12, 264
Hsp92II CATG 2 cut(s) 230, 627
Kzo9I GATC 4 cut(s) 169, 249, 313, 510
LmnI GCTCC 3 cut(s) 116, 218, 235
LpnPI CCDG 3 cut(s) 91, 99, 207
LweI GCATC 3 cut(s) 12, 63, 82
MaeI CTAG 4 cut(s) 371, 489, 555, 591
MaeII ACGT 2 cut(s) 12, 264
MaeIII GTNAC 2 cut(s) 265, 529
MalI GATC 4 cut(s) 171, 251, 315, 512
MboI GATC 4 cut(s) 169, 249, 313, 510
MboII GAAGA 3 cut(s) 31, 68, 103
MluCI AATT 2 cut(s) 278, 502
MlyI GAGTC 3 cut(s) 552, 572, 608
MmeI TCCRAC 2 cut(s) 237, 285
MnlI CCTC 7 cut(s) 90, 148, 167, 306, 327, 397, 408
Mph1103I ATGCAT 1 cut(s) 75
MseI TTAA 2 cut(s) 50, 68
MspCI CTTAAG 1 cut(s) 49
MvnI CGCG 3 cut(s) 130, 168, 429
MwoI GCNNNNNNNGC 3 cut(s) 227, 236, 371
NdeII GATC 4 cut(s) 169, 249, 313, 510
NlaIII CATG 2 cut(s) 230, 627
NruI TCGCGA 1 cut(s) 168
NsiI ATGCAT 1 cut(s) 75
PagI TCATGA 1 cut(s) 623
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PfeI GAWTC 4 cut(s) 102, 177, 287, 292
PflFI GACNNNGTC 1 cut(s) 341
PleI GAGTC 3 cut(s) 551, 572, 608
PpsI GAGTC 3 cut(s) 551, 572, 608
Psp1406I AACGTT 1 cut(s) 12
PsyI GACNNNGTC 1 cut(s) 341
RruI TCGCGA 1 cut(s) 168
SaqAI TTAA 2 cut(s) 50, 68
Sau3AI GATC 4 cut(s) 169, 249, 313, 510
SchI GAGTC 3 cut(s) 552, 572, 608
SfaNI GCATC 3 cut(s) 12, 63, 82
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
SpeI ACTAGT 2 cut(s) 554, 590
Sse9I AATT 2 cut(s) 278, 502
SsiI CCGC 4 cut(s) 270, 394, 429, 449
SspMI CTAG 4 cut(s) 371, 489, 555, 591
TaaI ACNGT 3 cut(s) 64, 341, 421
TaiI ACGT 2 cut(s) 15, 267
TaqI TCGA 3 cut(s) 100, 290, 336
TasI AATT 2 cut(s) 278, 502
TfiI GAWTC 4 cut(s) 102, 177, 287, 292
Tru1I TTAA 2 cut(s) 50, 68
Tru9I TTAA 2 cut(s) 50, 68
TscAI CASTG 1 cut(s) 69
TspDTI ATGAA 4 cut(s) 169, 471, 488, 612
TspGWI ACGGA 3 cut(s) 231, 318, 378
TspRI CASTG 1 cut(s) 69
Tth111I GACNNNGTC 1 cut(s) 341
Vha464I CTTAAG 1 cut(s) 49
XmiI GTMKAC 2 cut(s) 559, 595
XspI CTAG 4 cut(s) 371, 489, 555, 591
Zsp2I ATGCAT 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.