Prupe.3G223700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014123
Physical Location & Seq
Reverse (-)
22356830 .. 22357578
749 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G223700.1

Sequence Viewer

Length: 693 bp
ATGGAGAGGCACATACAGATGTTTTTGAAGAGGCTCTCGTACGTCTCCATAACCATAGGCACAATCACCTTCATCCTCCTCCTGCTCAAAACTCCAGACACCTGCGTCGCACCAGATTCGCCCCCAAAGCCCCATCTCCGCTTTCCCAAATCCTCCTGCGACTCCTCGCCTCGCGAGCTCCTCCCTCTGCACAAGAAGAACAAACGGCTCTGGTCCACCAAGACCTGGCAGAACAAAGTCCAGTCCTTCTCCAACTTCTTTCGCGCATGTTATCAAATGGGTCTCCTGCACAACGACTCCAAGGTCCTCTGCGTCTCCGCGGGTGCCGGCCACGAGGTCATGGCCCTGAACCAGTTGGGCGTCGCCGACGTCACCGGAATTGAGCTCCTCGATTCGCCTCCTCTGGTGAGCCGGGCCGATCCCCACAACTTGCCCTTCTTTGACGATGTGTTTGATTTGGGTTTTAGTGCTCATTTCGCAAAGGCTATGTTTCCGAACCGGTTTGTGTCGGAGATGGAGAGGACTGTGAGGGCTGGTGGGGTTTGTGTGGTGGTTGTTGACGAATGTGGGGATGAGGAGGTTAGGGAGATTGTAGATTTGTTTACGAATTCAAGCTTTCTTGGTGCGCTTAATGTTACTTTGACTGGATTGAGAATGACAAGGATTATTATGAAAGTTCAGCATTTACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

231

Amino Acids

25.78

Weight (kDa)

8.23

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16030 AT4G26730
fragaria_vesca FvH4_6g43920 FvH4_6g43920
malus_domestica MD09G1102000.v1.1 MD09G1127700.v1.1
prunus_persica Prupe.3G223700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0160701
rosa_laevigata RLG00000021234
rosa_multiflora Rmu_co8474907.1_g000001
rosa_roxburghii Rroxscaffold_2G00089470
rosa_rugosa Rorug02G0485100
rosa_samantha Rh2AG550100 Rh2BG564600 Rh2CG534500 Rh2DG573400
rosa_wichuraiana Rw2G045580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 110
AasI GACNNNNNNGTC 2 cut(s) 104, 302
AatII GACGTC 1 cut(s) 372
Acc36I ACCTGC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 323
AccB7I CCANNNNNTGG 1 cut(s) 225
AccII CGCG 3 cut(s) 174, 264, 320
AciI CCGC 3 cut(s) 139, 318, 320
AclWI GGATC 1 cut(s) 413
AcoI YGGCCR 1 cut(s) 328
AcsI RAATTY 1 cut(s) 607
AcyI GRCGYC 2 cut(s) 360, 369
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 225
AgeI ACCGGT 1 cut(s) 498
AgsI TTSAA 2 cut(s) 28, 612
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 3 cut(s) 178, 385, 615
AluI AGCT 3 cut(s) 178, 385, 615
Alw21I GWGCWC 3 cut(s) 180, 387, 472
Alw26I GTCTC 3 cut(s) 49, 287, 319
AlwI GGATC 1 cut(s) 413
AoxI GGCC 3 cut(s) 328, 342, 414
ApoI RAATTY 1 cut(s) 607
ArsI GACNNNNNNTTYG 2 cut(s) 434, 466
AsiGI ACCGGT 1 cut(s) 498
AspLEI GCGC 2 cut(s) 266, 628
AspS9I GGNCC 4 cut(s) 213, 304, 343, 414
AsuC2I CCSGG 1 cut(s) 413
AsuHPI GGTGA 3 cut(s) 58, 364, 418
AvaII GGWCC 2 cut(s) 213, 304
BanI GGYRCC 1 cut(s) 323
BanII GRGCYC 2 cut(s) 180, 387
BauI CACGAG 1 cut(s) 332
Bbv12I GWGCWC 3 cut(s) 180, 387, 472
BccI CCATC 2 cut(s) 141, 508
BceAI ACGGC 1 cut(s) 221
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BciT130I CCWGG 1 cut(s) 226
BcnI CCSGG 1 cut(s) 413
BcoDI GTCTC 3 cut(s) 49, 287, 319
BfuAI ACCTGC 1 cut(s) 110
Bme1390I CCNGG 2 cut(s) 226, 413
Bme18I GGWCC 2 cut(s) 213, 304
BmgT120I GGNCC 4 cut(s) 213, 304, 343, 414
BmiI GGNNCC 1 cut(s) 325
BmrFI CCNGG 2 cut(s) 226, 413
BpmI CTGGAG 1 cut(s) 78
BpuMI CCSGG 1 cut(s) 413
BsaHI GRCGYC 2 cut(s) 360, 369
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 300, 318
BsaWI WCCGGW 2 cut(s) 374, 498
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse118I RCCGGY 2 cut(s) 326, 498
Bse1I ACTGG 3 cut(s) 241, 352, 649
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 2 cut(s) 300, 318
BseGI GGATG 2 cut(s) 72, 577
BseLI CCNNNNNNNGG 1 cut(s) 225
BseNI ACTGG 3 cut(s) 241, 352, 649
BseRI GAGGAG 6 cut(s) 68, 154, 170, 377, 390, 590
BsgI GTGCAG 2 cut(s) 173, 272
Bsh1236I CGCG 3 cut(s) 174, 264, 320
BshFI GGCC 3 cut(s) 330, 344, 416
BshNI GGYRCC 1 cut(s) 323
BshTI ACCGGT 1 cut(s) 498
BsiHKAI GWGCWC 3 cut(s) 180, 387, 472
BsiSI CCGG 4 cut(s) 327, 375, 412, 499
BsiWI CGTACG 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 3 cut(s) 49, 287, 319
BsmBI CGTCTC 2 cut(s) 49, 319
BsnI GGCC 3 cut(s) 330, 344, 416
Bso31I GGTCTC 1 cut(s) 287
Bsp1286I GDGCHC 3 cut(s) 180, 387, 472
Bsp143I GATC 1 cut(s) 418
Bsp68I TCGCGA 1 cut(s) 174
BspACI CCGC 3 cut(s) 139, 318, 320
BspANI GGCC 3 cut(s) 330, 344, 416
BspFNI CGCG 3 cut(s) 174, 264, 320
BspLI GGNNCC 1 cut(s) 325
BspMI ACCTGC 1 cut(s) 110
BspPI GGATC 1 cut(s) 413
BspT107I GGYRCC 1 cut(s) 323
BspTNI GGTCTC 1 cut(s) 287
BsrFI RCCGGY 2 cut(s) 326, 498
BsrI ACTGG 3 cut(s) 241, 352, 649
BssAI RCCGGY 2 cut(s) 326, 498
BssECI CCNNGG 2 cut(s) 300, 318
BssMI GATC 1 cut(s) 418
BssNI GRCGYC 2 cut(s) 360, 369
BssSI CACGAG 1 cut(s) 332
BssT1I CCWWGG 1 cut(s) 300
Bst2BI CACGAG 1 cut(s) 332
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 526
Bst6I CTCTTC 1 cut(s) 23
BstACI GRCGYC 2 cut(s) 360, 369
BstC8I GCNNGC 2 cut(s) 176, 328
BstDSI CCRYGG 1 cut(s) 318
BstF5I GGATG 2 cut(s) 72, 577
BstFNI CGCG 3 cut(s) 174, 264, 320
BstHHI GCGC 2 cut(s) 266, 628
BstKTI GATC 1 cut(s) 421
BstMAI GTCTC 3 cut(s) 49, 287, 319
BstMBI GATC 1 cut(s) 418
BstMWI GCNNNNNNNGC 3 cut(s) 127, 175, 476
BstNI CCWGG 1 cut(s) 226
BstNSI RCATGY 1 cut(s) 270
BstSCI CCNGG 2 cut(s) 224, 411
BstUI CGCG 3 cut(s) 174, 264, 320
BsuRI GGCC 3 cut(s) 330, 344, 416
BtgI CCRYGG 1 cut(s) 318
BtsCI GGATG 2 cut(s) 72, 577
BtuMI TCGCGA 1 cut(s) 174
BveI ACCTGC 1 cut(s) 110
Cac8I GCNNGC 2 cut(s) 176, 328
CfoI GCGC 2 cut(s) 266, 628
Cfr10I RCCGGY 2 cut(s) 326, 498
Cfr13I GGNCC 4 cut(s) 213, 304, 343, 414
Cfr42I CCGCGG 1 cut(s) 321
CseI GACGC 3 cut(s) 94, 301, 349
Csp6I GTAC 1 cut(s) 40
CspAI ACCGGT 1 cut(s) 498
CviAII CATG 2 cut(s) 267, 340
CviQI GTAC 1 cut(s) 40
DpnI GATC 1 cut(s) 420
DpnII GATC 1 cut(s) 418
DrdI GACNNNNNNGTC 2 cut(s) 104, 302
DseDI GACNNNNNNGTC 2 cut(s) 104, 302
EaeI YGGCCR 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Ecl136II GAGCTC 2 cut(s) 178, 385
Eco130I CCWWGG 1 cut(s) 300
Eco24I GRGCYC 2 cut(s) 180, 387
Eco31I GGTCTC 1 cut(s) 287
Eco47I GGWCC 2 cut(s) 213, 304
Eco53kI GAGCTC 2 cut(s) 178, 385
EcoICRI GAGCTC 2 cut(s) 178, 385
EcoO109I RGGNCCY 1 cut(s) 304
EcoRI GAATTC 1 cut(s) 607
EcoRII CCWGG 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 300
EcoT38I GRGCYC 2 cut(s) 180, 387
ErhI CCWWGG 1 cut(s) 300
Esp3I CGTCTC 2 cut(s) 49, 319
FaeI CATG 2 cut(s) 270, 343
FaiI YATR 7 cut(s) 14, 50, 56, 268, 341, 488, 671
FatI CATG 2 cut(s) 266, 339
FauI CCCGC 1 cut(s) 313
FokI GGATG 2 cut(s) 59, 584
FriOI GRGCYC 2 cut(s) 180, 387
GlaI GCGC 2 cut(s) 265, 627
GsuI CTGGAG 1 cut(s) 78
HaeIII GGCC 3 cut(s) 330, 344, 416
HapII CCGG 4 cut(s) 327, 375, 412, 499
HgaI GACGC 3 cut(s) 94, 301, 349
HhaI GCGC 2 cut(s) 266, 628
Hin1I GRCGYC 2 cut(s) 360, 369
Hin1II CATG 2 cut(s) 270, 343
Hin6I GCGC 2 cut(s) 264, 626
HinP1I GCGC 2 cut(s) 264, 626
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HindIII AAGCTT 1 cut(s) 613
HinfI GANTC 4 cut(s) 116, 161, 296, 392
HpaII CCGG 4 cut(s) 327, 375, 412, 499
HphI GGTGA 3 cut(s) 58, 364, 418
Hpy166II GTNNAC 3 cut(s) 216, 559, 603
Hpy188I TCNGA 2 cut(s) 495, 511
Hpy188III TCNNGA 2 cut(s) 95, 173
Hpy8I GTNNAC 3 cut(s) 216, 559, 603
Hpy99I CGWCG 3 cut(s) 110, 365, 371
HpyAV CCTTC 3 cut(s) 79, 256, 445
HpyCH4III ACNGT 1 cut(s) 526
HpyCH4IV ACGT 2 cut(s) 42, 369
HpyCH4V TGCA 2 cut(s) 190, 289
HpyF10VI GCNNNNNNNGC 3 cut(s) 127, 175, 476
HpySE526I ACGT 2 cut(s) 42, 369
Hsp92I GRCGYC 2 cut(s) 360, 369
Hsp92II CATG 2 cut(s) 270, 343
HspAI GCGC 2 cut(s) 264, 626
KroI GCCGGC 1 cut(s) 326
KroNI GCCGGC 1 cut(s) 328
KspI CCGCGG 1 cut(s) 321
Kzo9I GATC 1 cut(s) 418
LmnI GCTCC 2 cut(s) 183, 390
MaeII ACGT 2 cut(s) 42, 369
MaeIII GTNAC 2 cut(s) 370, 634
MalI GATC 1 cut(s) 420
MboI GATC 1 cut(s) 418
MboII GAAGA 2 cut(s) 40, 208
MhlI GDGCHC 3 cut(s) 180, 387, 472
MluCI AATT 2 cut(s) 378, 607
MlyI GAGTC 2 cut(s) 155, 290
MmeI TCCRAC 2 cut(s) 276, 489
MroNI GCCGGC 1 cut(s) 326
MseI TTAA 1 cut(s) 630
MslI CAYNNNNRTG 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 320
MspI CCGG 4 cut(s) 327, 375, 412, 499
MspR9I CCNGG 2 cut(s) 226, 413
MvaI CCWGG 1 cut(s) 226
MvnI CGCG 3 cut(s) 174, 264, 320
MwoI GCNNNNNNNGC 3 cut(s) 127, 175, 476
NaeI GCCGGC 1 cut(s) 328
NciI CCSGG 1 cut(s) 413
NdeII GATC 1 cut(s) 418
NgoMIV GCCGGC 1 cut(s) 326
NlaIII CATG 2 cut(s) 270, 343
NlaIV GGNNCC 1 cut(s) 325
NmuCI GTSAC 1 cut(s) 370
NruI TCGCGA 1 cut(s) 174
NspI RCATGY 1 cut(s) 270
PaqCI CACCTGC 1 cut(s) 110
PdiI GCCGGC 1 cut(s) 328
PfeI GAWTC 2 cut(s) 116, 392
Pfl23II CGTACG 1 cut(s) 39
PflMI CCANNNNNTGG 1 cut(s) 225
PinAI ACCGGT 1 cut(s) 498
PleI GAGTC 2 cut(s) 155, 290
PpsI GAGTC 2 cut(s) 155, 290
PpuMI RGGWCCY 1 cut(s) 304
Psp124BI GAGCTC 2 cut(s) 180, 387
Psp5II RGGWCCY 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspLI CGTACG 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 325
PspPI GGNCC 4 cut(s) 213, 304, 343, 414
PspPPI RGGWCCY 1 cut(s) 304
RruI TCGCGA 1 cut(s) 174
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 17
SacI GAGCTC 2 cut(s) 180, 387
SacII CCGCGG 1 cut(s) 321
SaqAI TTAA 1 cut(s) 630
Sau3AI GATC 1 cut(s) 418
Sau96I GGNCC 4 cut(s) 213, 304, 343, 414
SchI GAGTC 2 cut(s) 155, 290
ScrFI CCNGG 2 cut(s) 226, 413
SduI GDGCHC 3 cut(s) 180, 387, 472
Sfr303I CCGCGG 1 cut(s) 321
SgrBI CCGCGG 1 cut(s) 321
SinI GGWCC 2 cut(s) 213, 304
SmiMI CAYNNNNRTG 1 cut(s) 17
Sse9I AATT 2 cut(s) 378, 607
SsiI CCGC 3 cut(s) 139, 318, 320
SstI GAGCTC 2 cut(s) 180, 387
StyD4I CCNGG 2 cut(s) 224, 411
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 1 cut(s) 526
TaiI ACGT 2 cut(s) 45, 372
TaqI TCGA 1 cut(s) 390
TasI AATT 2 cut(s) 378, 607
TfiI GAWTC 2 cut(s) 116, 392
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TseFI GTSAC 1 cut(s) 370
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 2 cut(s) 61, 686
Van91I CCANNNNNTGG 1 cut(s) 225
VpaK11BI GGWCC 2 cut(s) 213, 304
XapI RAATTY 1 cut(s) 607
XceI RCATGY 1 cut(s) 270
ZraI GACGTC 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.