Rroxscaffold_2G00089470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014123
Physical Location & Seq
Forward (+)
11457663 .. 11460085
2423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089470.1

Sequence Viewer

Length: 858 bp
ATGCACTTTTGGTCCTGCATTTTTGAGTATTTTGCACATCGAGTCCGTATAGTCACAACTCTATCAATTTGGTACTTAACCCCTTTGAAGAATGACGAGACGAAATTTGCTGCTTACGGTCGCTTTATTTTATTATCATCACAAGCAGGACTTCACTTCGAAGTTCAAACTAAAGTTGTGGCGTGTGTTCCTGAAGAGGCTCTCCTACATCGCCCTGGCCATCGGGACCTTGACCTTCCTCCTCCTCATCCTCGAAATCCCCGACACCTGCGTCGCACCCGATTCCCCCCGAAGCCTCACCTCCGCTTCCCCAAGCACTCCTGCGACCACCAGCCCCGCCAGCACCTCCCCCTCCACAAGAAGAACAAGCGCCTCTGGTCCTCCGCCACCTGGCAGAACCAGGTCCGTTCATTCTCCCACCTCTTCCACTCCTTCTACCAAATCGGCCTCCTCCACAACCACTCCAAGGTCCTCTGCGTCTCCGCCGGCGCCGGCCACGAGGTCATGGCCCTCTCCCAACTCGGCGTCGATGACGTCACCGGCATTGAGCTCCTGGACTCGCCGCCGCTCGTCAGCCGCGCCGATCCCCACAACCTGCCGTTCTTCGATGACGTGTTTGATTTCGGGTTTAGTGCTAGATTGGAACTGGCGTTGTTTCCGTCGAGGTTCGCGGCGGAGATGGAGAGGACGGTGAGGCCCGGCGGGGTTTGCGCGGTGGCGGTGGAGGAATGTGGGGATGGGGAGGTCAAGGAGATTGCGGGGTTGTTTAGGAATTCGAGGTTTCTTGGCGCCATGAATGTAACGTTGACTGGGTTGAGAATGACCAGGATTATAATGAGAGTTAAGCATTCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

285

Amino Acids

32.55

Weight (kDa)

9.47

Isoelectric Point (pI)

49.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16030 AT4G26730
fragaria_vesca FvH4_6g43920 FvH4_6g43920
malus_domestica MD09G1102000.v1.1 MD09G1127700.v1.1
prunus_persica Prupe.3G223700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0160701
rosa_laevigata RLG00000021234
rosa_multiflora Rmu_co8474907.1_g000001
rosa_roxburghii Rroxscaffold_2G00089470
rosa_rugosa Rorug02G0485100
rosa_samantha Rh2AG550100 Rh2BG564600 Rh2CG534500 Rh2DG573400
rosa_wichuraiana Rw2G045580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 833
AarI CACCTGC 1 cut(s) 276
AasI GACNNNNNNGTC 1 cut(s) 270
AatII GACGTC 1 cut(s) 537
Acc36I ACCTGC 2 cut(s) 276, 603
AccB1I GGYRCC 2 cut(s) 488, 788
AccBSI CCGCTC 1 cut(s) 568
AccII CGCG 3 cut(s) 579, 671, 713
AclI AACGTT 1 cut(s) 803
AclWI GGATC 1 cut(s) 578
AcoI YGGCCR 2 cut(s) 217, 493
AcsI RAATTY 2 cut(s) 104, 772
AcuI CTGAAG 1 cut(s) 213
AcyI GRCGYC 4 cut(s) 489, 525, 534, 789
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 2 cut(s) 390, 466
AflIII ACRYGT 1 cut(s) 612
AgsI TTSAA 2 cut(s) 88, 167
AjiI CACGTC 1 cut(s) 613
AjnI CCWGG 5 cut(s) 214, 389, 399, 552, 824
AluBI AGCT 1 cut(s) 550
AluI AGCT 1 cut(s) 550
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 2 cut(s) 92, 484
AlwI GGATC 1 cut(s) 578
AoxI GGCC 5 cut(s) 217, 445, 493, 507, 695
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 2 cut(s) 104, 772
AspLEI GCGC 5 cut(s) 372, 491, 581, 713, 791
AspS9I GGNCC 7 cut(s) 12, 226, 378, 403, 469, 508, 696
AsuC2I CCSGG 1 cut(s) 699
AsuHPI GGTGA 4 cut(s) 290, 529, 703, 843
AsuII TTCGAA 1 cut(s) 159
AvaII GGWCC 5 cut(s) 12, 226, 378, 403, 469
BalI TGGCCA 1 cut(s) 219
BanI GGYRCC 2 cut(s) 488, 788
BanII GRGCYC 1 cut(s) 552
BauI CACGAG 1 cut(s) 497
Bbv12I GWGCWC 1 cut(s) 552
BbvI GCAGC 1 cut(s) 97
BccI CCATC 3 cut(s) 228, 673, 731
BceAI ACGGC 1 cut(s) 583
BciT130I CCWGG 5 cut(s) 216, 391, 401, 554, 826
BcnI CCSGG 1 cut(s) 699
BcoDI GTCTC 2 cut(s) 92, 484
BfaI CTAG 1 cut(s) 636
BfoI RGCGCY 3 cut(s) 373, 492, 792
BfuAI ACCTGC 2 cut(s) 276, 603
BisI GCNGC 5 cut(s) 111, 563, 566, 577, 672
BlsI GCNGC 5 cut(s) 112, 564, 567, 578, 673
Bme1390I CCNGG 6 cut(s) 216, 391, 401, 554, 699, 826
Bme18I GGWCC 5 cut(s) 12, 226, 378, 403, 469
BmgBI CACGTC 1 cut(s) 613
BmgT120I GGNCC 7 cut(s) 12, 226, 378, 403, 469, 508, 696
BmiI GGNNCC 3 cut(s) 227, 490, 790
BmrFI CCNGG 6 cut(s) 216, 391, 401, 554, 699, 826
BmrI ACTGGG 1 cut(s) 819
BmuI ACTGGG 1 cut(s) 819
Bpu14I TTCGAA 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 699
BsaHI GRCGYC 4 cut(s) 489, 525, 534, 789
BsaJI CCNNGG 2 cut(s) 214, 465
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 2 cut(s) 390, 466
Bse118I RCCGGY 3 cut(s) 485, 491, 539
Bse1I ACTGG 2 cut(s) 651, 814
BseBI CCWGG 5 cut(s) 216, 391, 401, 554, 826
BseDI CCNNGG 2 cut(s) 214, 465
BseGI GGATG 2 cut(s) 247, 742
BseLI CCNNNNNNNGG 2 cut(s) 390, 466
BseNI ACTGG 2 cut(s) 651, 814
BseRI GAGGAG 3 cut(s) 231, 234, 440
BseXI GCAGC 1 cut(s) 97
Bsh1236I CGCG 3 cut(s) 579, 671, 713
Bsh1285I CGRYCG 1 cut(s) 121
BshFI GGCC 5 cut(s) 219, 447, 495, 509, 697
BshNI GGYRCC 2 cut(s) 488, 788
BsiEI CGRYCG 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 552
BsiSI CCGG 4 cut(s) 486, 492, 540, 699
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 2 cut(s) 390, 466
BsmAI GTCTC 2 cut(s) 92, 484
BsmBI CGTCTC 2 cut(s) 92, 484
BsmFI GGGAC 1 cut(s) 239
BsmI GAATGC 1 cut(s) 847
BsnI GGCC 5 cut(s) 219, 447, 495, 509, 697
Bsp119I TTCGAA 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 552
Bsp143I GATC 1 cut(s) 583
BspANI GGCC 5 cut(s) 219, 447, 495, 509, 697
BspFNI CGCG 3 cut(s) 579, 671, 713
BspLI GGNNCC 3 cut(s) 227, 490, 790
BspMI ACCTGC 2 cut(s) 276, 603
BspPI GGATC 1 cut(s) 578
BspT104I TTCGAA 1 cut(s) 159
BspT107I GGYRCC 2 cut(s) 488, 788
BsrBI CCGCTC 1 cut(s) 568
BsrFI RCCGGY 3 cut(s) 485, 491, 539
BsrI ACTGG 2 cut(s) 651, 814
BssAI RCCGGY 3 cut(s) 485, 491, 539
BssECI CCNNGG 2 cut(s) 214, 465
BssMI GATC 1 cut(s) 583
BssNI GRCGYC 4 cut(s) 489, 525, 534, 789
BssSI CACGAG 1 cut(s) 497
BssT1I CCWWGG 1 cut(s) 465
Bst2BI CACGAG 1 cut(s) 497
Bst2UI CCWGG 5 cut(s) 216, 391, 401, 554, 826
Bst4CI ACNGT 2 cut(s) 119, 691
Bst6I CTCTTC 2 cut(s) 189, 428
BstACI GRCGYC 4 cut(s) 489, 525, 534, 789
BstBI TTCGAA 1 cut(s) 159
BstC8I GCNNGC 3 cut(s) 341, 487, 493
BstF5I GGATG 2 cut(s) 247, 742
BstFNI CGCG 3 cut(s) 579, 671, 713
BstH2I RGCGCY 3 cut(s) 373, 492, 792
BstHHI GCGC 5 cut(s) 372, 491, 581, 713, 791
BstKTI GATC 1 cut(s) 586
BstMAI GTCTC 2 cut(s) 92, 484
BstMBI GATC 1 cut(s) 583
BstMCI CGRYCG 1 cut(s) 121
BstMWI GCNNNNNNNGC 2 cut(s) 340, 708
BstNI CCWGG 5 cut(s) 216, 391, 401, 554, 826
BstSCI CCNGG 6 cut(s) 214, 389, 399, 552, 697, 824
BstUI CGCG 3 cut(s) 579, 671, 713
BstV1I GCAGC 1 cut(s) 97
BsuRI GGCC 5 cut(s) 219, 447, 495, 509, 697
BtgZI GCGATG 1 cut(s) 194
BtrI CACGTC 1 cut(s) 613
BtsCI GGATG 2 cut(s) 247, 742
BveI ACCTGC 2 cut(s) 276, 603
Cac8I GCNNGC 3 cut(s) 341, 487, 493
CfoI GCGC 5 cut(s) 372, 491, 581, 713, 791
Cfr10I RCCGGY 3 cut(s) 485, 491, 539
Cfr13I GGNCC 7 cut(s) 12, 226, 378, 403, 469, 508, 696
CseI GACGC 3 cut(s) 260, 466, 514
CsiI ACCWGGT 1 cut(s) 399
Csp6I GTAC 1 cut(s) 73
CviAII CATG 2 cut(s) 505, 793
CviQI GTAC 1 cut(s) 73
DinI GGCGCC 2 cut(s) 490, 790
DpnI GATC 1 cut(s) 585
DpnII GATC 1 cut(s) 583
DrdI GACNNNNNNGTC 1 cut(s) 270
DseDI GACNNNNNNGTC 1 cut(s) 270
EaeI YGGCCR 2 cut(s) 217, 493
Eam1104I CTCTTC 2 cut(s) 189, 428
EarI CTCTTC 2 cut(s) 189, 428
EciI GGCGGA 3 cut(s) 373, 472, 689
Ecl136II GAGCTC 1 cut(s) 550
Eco130I CCWWGG 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 552
Eco47I GGWCC 5 cut(s) 12, 226, 378, 403, 469
Eco53kI GAGCTC 1 cut(s) 550
Eco57I CTGAAG 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 550
EcoO109I RGGNCCY 2 cut(s) 226, 469
EcoRI GAATTC 1 cut(s) 772
EcoRII CCWGG 5 cut(s) 214, 389, 399, 552, 824
EcoT14I CCWWGG 1 cut(s) 465
EcoT38I GRGCYC 1 cut(s) 552
EgeI GGCGCC 2 cut(s) 490, 790
EheI GGCGCC 2 cut(s) 490, 790
ErhI CCWWGG 1 cut(s) 465
Esp3I CGTCTC 2 cut(s) 92, 484
FaeI CATG 2 cut(s) 508, 796
FaiI YATR 4 cut(s) 50, 506, 794, 833
FalI AAGNNNNNCTT 2 cut(s) 135, 167
FaqI GGGAC 1 cut(s) 239
FatI CATG 2 cut(s) 504, 792
FauI CCCGC 3 cut(s) 344, 695, 751
Fnu4HI GCNGC 5 cut(s) 111, 563, 566, 577, 672
FokI GGATG 2 cut(s) 234, 749
FriOI GRGCYC 1 cut(s) 552
Fsp4HI GCNGC 5 cut(s) 111, 563, 566, 577, 672
FspBI CTAG 1 cut(s) 636
GlaI GCGC 5 cut(s) 371, 490, 580, 712, 790
GluI GCNGC 5 cut(s) 111, 563, 566, 577, 672
HaeII RGCGCY 3 cut(s) 373, 492, 792
HaeIII GGCC 5 cut(s) 219, 447, 495, 509, 697
HapII CCGG 4 cut(s) 486, 492, 540, 699
HgaI GACGC 3 cut(s) 260, 466, 514
HhaI GCGC 5 cut(s) 372, 491, 581, 713, 791
Hin1I GRCGYC 4 cut(s) 489, 525, 534, 789
Hin1II CATG 2 cut(s) 508, 796
Hin6I GCGC 5 cut(s) 370, 489, 579, 711, 789
HinP1I GCGC 5 cut(s) 370, 489, 579, 711, 789
HincII GTYRAC 1 cut(s) 807
HindII GTYRAC 1 cut(s) 807
HinfI GANTC 3 cut(s) 42, 282, 557
HpaII CCGG 4 cut(s) 486, 492, 540, 699
HphI GGTGA 4 cut(s) 290, 529, 703, 843
Hpy166II GTNNAC 1 cut(s) 807
Hpy188III TCNNGA 2 cut(s) 191, 224
Hpy8I GTNNAC 1 cut(s) 807
Hpy99I CGWCG 3 cut(s) 276, 530, 664
HpyAV CCTTC 2 cut(s) 245, 442
HpyCH4III ACNGT 2 cut(s) 119, 691
HpyCH4IV ACGT 3 cut(s) 534, 612, 803
HpyCH4V TGCA 3 cut(s) 4, 18, 35
HpyF10VI GCNNNNNNNGC 2 cut(s) 340, 708
HpySE526I ACGT 3 cut(s) 534, 612, 803
Hsp92I GRCGYC 4 cut(s) 489, 525, 534, 789
Hsp92II CATG 2 cut(s) 508, 796
HspAI GCGC 5 cut(s) 370, 489, 579, 711, 789
KasI GGCGCC 2 cut(s) 488, 788
KroI GCCGGC 2 cut(s) 485, 491
KroNI GCCGGC 2 cut(s) 487, 493
Kzo9I GATC 1 cut(s) 583
LmnI GCTCC 1 cut(s) 555
Lsp1109I GCAGC 1 cut(s) 97
MabI ACCWGGT 1 cut(s) 399
MaeI CTAG 1 cut(s) 636
MaeII ACGT 3 cut(s) 534, 612, 803
MaeIII GTNAC 3 cut(s) 52, 535, 799
MalI GATC 1 cut(s) 585
MbiI CCGCTC 1 cut(s) 568
MboI GATC 1 cut(s) 583
MboII GAAGA 5 cut(s) 100, 206, 373, 415, 595
MhlI GDGCHC 1 cut(s) 552
MlsI TGGCCA 1 cut(s) 219
MluCI AATT 3 cut(s) 66, 104, 772
MluNI TGGCCA 1 cut(s) 219
Mly113I GGCGCC 2 cut(s) 489, 789
MlyI GAGTC 2 cut(s) 51, 551
Mox20I TGGCCA 1 cut(s) 219
MreI CGCCGGCG 1 cut(s) 485
MroNI GCCGGC 2 cut(s) 485, 491
MscI TGGCCA 1 cut(s) 219
MseI TTAA 2 cut(s) 77, 843
Msp20I TGGCCA 1 cut(s) 219
MspI CCGG 4 cut(s) 486, 492, 540, 699
MspR9I CCNGG 6 cut(s) 216, 391, 401, 554, 699, 826
Mva1269I GAATGC 1 cut(s) 847
MvaI CCWGG 5 cut(s) 216, 391, 401, 554, 826
MvnI CGCG 3 cut(s) 579, 671, 713
MwoI GCNNNNNNNGC 2 cut(s) 340, 708
NaeI GCCGGC 2 cut(s) 487, 493
NarI GGCGCC 2 cut(s) 489, 789
NciI CCSGG 1 cut(s) 699
NdeII GATC 1 cut(s) 583
NgoMIV GCCGGC 2 cut(s) 485, 491
NlaIII CATG 2 cut(s) 508, 796
NlaIV GGNNCC 3 cut(s) 227, 490, 790
NmeAIII GCCGAG 1 cut(s) 501
NmuCI GTSAC 2 cut(s) 52, 535
NspV TTCGAA 1 cut(s) 159
PaqCI CACCTGC 1 cut(s) 276
PcsI WCGNNNNNNNCGW 1 cut(s) 259
PctI GAATGC 1 cut(s) 847
PdiI GCCGGC 2 cut(s) 487, 493
PfeI GAWTC 1 cut(s) 282
PfoI TCCNGGA 1 cut(s) 552
PkrI GCNGC 5 cut(s) 112, 564, 567, 578, 673
PleI GAGTC 2 cut(s) 50, 551
PluTI GGCGCC 2 cut(s) 492, 792
PpsI GAGTC 2 cut(s) 50, 551
PpuMI RGGWCCY 2 cut(s) 226, 469
PsiI TTATAA 1 cut(s) 833
Psp124BI GAGCTC 1 cut(s) 552
Psp1406I AACGTT 1 cut(s) 803
Psp5II RGGWCCY 2 cut(s) 226, 469
Psp6I CCWGG 5 cut(s) 214, 389, 399, 552, 824
PspGI CCWGG 5 cut(s) 214, 389, 399, 552, 824
PspN4I GGNNCC 3 cut(s) 227, 490, 790
PspPI GGNCC 7 cut(s) 12, 226, 378, 403, 469, 508, 696
PspPPI RGGWCCY 2 cut(s) 226, 469
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SacI GAGCTC 1 cut(s) 552
SaqAI TTAA 2 cut(s) 77, 843
SatI GCNGC 5 cut(s) 111, 563, 566, 577, 672
Sau3AI GATC 1 cut(s) 583
Sau96I GGNCC 7 cut(s) 12, 226, 378, 403, 469, 508, 696
SchI GAGTC 2 cut(s) 51, 551
ScrFI CCNGG 6 cut(s) 216, 391, 401, 554, 699, 826
SduI GDGCHC 1 cut(s) 552
SexAI ACCWGGT 1 cut(s) 399
SfoI GGCGCC 2 cut(s) 490, 790
SfuI TTCGAA 1 cut(s) 159
SgrAI CRCCGGYG 1 cut(s) 485
SinI GGWCC 5 cut(s) 12, 226, 378, 403, 469
Sse9I AATT 3 cut(s) 66, 104, 772
SspDI GGCGCC 2 cut(s) 488, 788
SspMI CTAG 1 cut(s) 636
SstI GAGCTC 1 cut(s) 552
StyD4I CCNGG 6 cut(s) 214, 389, 399, 552, 697, 824
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 2 cut(s) 119, 691
TaiI ACGT 3 cut(s) 537, 615, 806
TaqI TCGA 7 cut(s) 40, 159, 253, 528, 606, 662, 776
TasI AATT 3 cut(s) 66, 104, 772
TauI GCSGC 4 cut(s) 565, 568, 579, 674
TfiI GAWTC 1 cut(s) 282
Tru1I TTAA 2 cut(s) 77, 843
Tru9I TTAA 2 cut(s) 77, 843
TseFI GTSAC 2 cut(s) 52, 535
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 2 cut(s) 52, 535
TspDTI ATGAA 2 cut(s) 399, 809
TspGWI ACGGA 3 cut(s) 35, 395, 648
VpaK11BI GGWCC 5 cut(s) 12, 226, 378, 403, 469
XapI RAATTY 2 cut(s) 104, 772
XspI CTAG 1 cut(s) 636
ZraI GACGTC 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.