Rmu_co8474907.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8474907.1
OG0014123
Physical Location & Seq
Reverse (-)
2 .. 383
382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8474907.1_g000001.1.cds

Sequence Viewer

Length: 382 bp
atggatcatcacatagaggtgttcctgaagaggctctcctacatcgccctggccatcgggaccctcaccttcctcttcctcatcctcgaaatccccgacacctgcgtcgcacccgattcccccccgaagcctcacctccggttccccaagcactcctgcgaccaccagccccgccagcacctccccctccacaagaagaacaagcgcctctggtcctccgccacctggcagaaccaggtccgttcattctcccacctcttccactccttctaccaaatcggcctcctccacaaccactccaaggtcctctgcgtctccgccggcgccggccacgaggtcatggccctctcccacctcggcgtcgatgacgtcaccggcattg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

127

Amino Acids

14.43

Weight (kDa)

8.91

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014123)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16030 AT4G26730
fragaria_vesca FvH4_6g43920 FvH4_6g43920
malus_domestica MD09G1102000.v1.1 MD09G1127700.v1.1
prunus_persica Prupe.3G223700_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0160701
rosa_laevigata RLG00000021234
rosa_multiflora Rmu_co8474907.1_g000001
rosa_roxburghii Rroxscaffold_2G00089470
rosa_rugosa Rorug02G0485100
rosa_samantha Rh2AG550100 Rh2BG564600 Rh2CG534500 Rh2DG573400
rosa_wichuraiana Rw2G045580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 110
AasI GACNNNNNNGTC 1 cut(s) 104
AatII GACGTC 1 cut(s) 372
Acc36I ACCTGC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 323
AciI CCGC 3 cut(s) 172, 219, 318
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 2 cut(s) 51, 328
AcuI CTGAAG 1 cut(s) 47
AcyI GRCGYC 3 cut(s) 324, 360, 369
AfiI CCNNNNNNNGG 2 cut(s) 225, 301
AjnI CCWGG 3 cut(s) 48, 224, 234
Alw26I GTCTC 1 cut(s) 319
AlwI GGATC 1 cut(s) 12
AoxI GGCC 4 cut(s) 51, 280, 328, 342
AspLEI GCGC 2 cut(s) 207, 326
AspS9I GGNCC 5 cut(s) 60, 213, 238, 304, 343
AsuHPI GGTGA 3 cut(s) 58, 125, 364
AvaII GGWCC 4 cut(s) 60, 213, 238, 304
BalI TGGCCA 1 cut(s) 53
BanI GGYRCC 1 cut(s) 323
BauI CACGAG 1 cut(s) 332
BccI CCATC 1 cut(s) 62
BciT130I CCWGG 3 cut(s) 50, 226, 236
BcoDI GTCTC 1 cut(s) 319
BfoI RGCGCY 2 cut(s) 208, 327
BfuAI ACCTGC 1 cut(s) 110
Bme1390I CCNGG 3 cut(s) 50, 226, 236
Bme18I GGWCC 4 cut(s) 60, 213, 238, 304
BmgT120I GGNCC 5 cut(s) 60, 213, 238, 304, 343
BmiI GGNNCC 4 cut(s) 61, 62, 143, 325
BmrFI CCNGG 3 cut(s) 50, 226, 236
BsaHI GRCGYC 3 cut(s) 324, 360, 369
BsaJI CCNNGG 3 cut(s) 48, 300, 355
BsaWI WCCGGW 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 301
Bse118I RCCGGY 3 cut(s) 320, 326, 374
BseBI CCWGG 3 cut(s) 50, 226, 236
BseDI CCNNGG 3 cut(s) 48, 300, 355
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 2 cut(s) 225, 301
BseRI GAGGAG 1 cut(s) 275
BshFI GGCC 4 cut(s) 53, 282, 330, 344
BshNI GGYRCC 1 cut(s) 323
BsiSI CCGG 4 cut(s) 139, 321, 327, 375
BslFI GGGAC 1 cut(s) 73
BslI CCNNNNNNNGG 2 cut(s) 225, 301
BsmAI GTCTC 1 cut(s) 319
BsmBI CGTCTC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 73
BsnI GGCC 4 cut(s) 53, 282, 330, 344
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 3 cut(s) 172, 219, 318
BspANI GGCC 4 cut(s) 53, 282, 330, 344
BspLI GGNNCC 4 cut(s) 61, 62, 143, 325
BspMI ACCTGC 1 cut(s) 110
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 323
BsrFI RCCGGY 3 cut(s) 320, 326, 374
BssAI RCCGGY 3 cut(s) 320, 326, 374
BssECI CCNNGG 3 cut(s) 48, 300, 355
BssMI GATC 1 cut(s) 4
BssNI GRCGYC 3 cut(s) 324, 360, 369
BssSI CACGAG 1 cut(s) 332
BssT1I CCWWGG 1 cut(s) 300
Bst2BI CACGAG 1 cut(s) 332
Bst2UI CCWGG 3 cut(s) 50, 226, 236
Bst6I CTCTTC 3 cut(s) 23, 80, 263
BstACI GRCGYC 3 cut(s) 324, 360, 369
BstC8I GCNNGC 3 cut(s) 176, 322, 328
BstF5I GGATG 1 cut(s) 81
BstH2I RGCGCY 2 cut(s) 208, 327
BstHHI GCGC 2 cut(s) 207, 326
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstNI CCWGG 3 cut(s) 50, 226, 236
BstSCI CCNGG 3 cut(s) 48, 224, 234
BsuRI GGCC 4 cut(s) 53, 282, 330, 344
BtgZI GCGATG 1 cut(s) 28
BtsCI GGATG 1 cut(s) 81
BveI ACCTGC 1 cut(s) 110
Cac8I GCNNGC 3 cut(s) 176, 322, 328
CfoI GCGC 2 cut(s) 207, 326
Cfr10I RCCGGY 3 cut(s) 320, 326, 374
Cfr13I GGNCC 5 cut(s) 60, 213, 238, 304, 343
CseI GACGC 3 cut(s) 94, 301, 349
CsiI ACCWGGT 1 cut(s) 234
CviAII CATG 1 cut(s) 340
CviJI RGCY 7 cut(s) 34, 53, 130, 169, 282, 330, 344
CviKI_1 RGCY 7 cut(s) 34, 53, 130, 169, 282, 330, 344
DinI GGCGCC 1 cut(s) 325
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
EaeI YGGCCR 2 cut(s) 51, 328
Eam1104I CTCTTC 3 cut(s) 23, 80, 263
EarI CTCTTC 3 cut(s) 23, 80, 263
EciI GGCGGA 2 cut(s) 208, 307
Eco130I CCWWGG 1 cut(s) 300
Eco47I GGWCC 4 cut(s) 60, 213, 238, 304
Eco57I CTGAAG 1 cut(s) 47
EcoO109I RGGNCCY 2 cut(s) 60, 304
EcoRII CCWGG 3 cut(s) 48, 224, 234
EcoT14I CCWWGG 1 cut(s) 300
EgeI GGCGCC 1 cut(s) 325
EheI GGCGCC 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 300
Esp3I CGTCTC 1 cut(s) 319
FaeI CATG 1 cut(s) 343
FaiI YATR 2 cut(s) 14, 341
FaqI GGGAC 1 cut(s) 73
FatI CATG 1 cut(s) 339
FauI CCCGC 1 cut(s) 179
FokI GGATG 1 cut(s) 68
GlaI GCGC 2 cut(s) 206, 325
HaeII RGCGCY 2 cut(s) 208, 327
HaeIII GGCC 4 cut(s) 53, 282, 330, 344
HapII CCGG 4 cut(s) 139, 321, 327, 375
HgaI GACGC 3 cut(s) 94, 301, 349
HhaI GCGC 2 cut(s) 207, 326
Hin1I GRCGYC 3 cut(s) 324, 360, 369
Hin1II CATG 1 cut(s) 343
Hin6I GCGC 2 cut(s) 205, 324
HinP1I GCGC 2 cut(s) 205, 324
HinfI GANTC 1 cut(s) 116
HpaII CCGG 4 cut(s) 139, 321, 327, 375
HphI GGTGA 3 cut(s) 58, 125, 364
Hpy188III TCNNGA 2 cut(s) 25, 58
Hpy99I CGWCG 2 cut(s) 110, 365
HpyAV CCTTC 2 cut(s) 79, 277
HpyCH4IV ACGT 1 cut(s) 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpySE526I ACGT 1 cut(s) 369
Hsp92I GRCGYC 3 cut(s) 324, 360, 369
Hsp92II CATG 1 cut(s) 343
HspAI GCGC 2 cut(s) 205, 324
KasI GGCGCC 1 cut(s) 323
KflI GGGWCCC 1 cut(s) 60
KroI GCCGGC 2 cut(s) 320, 326
KroNI GCCGGC 2 cut(s) 322, 328
Kzo9I GATC 1 cut(s) 4
MabI ACCWGGT 1 cut(s) 234
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 1 cut(s) 370
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 4 cut(s) 40, 67, 208, 250
MlsI TGGCCA 1 cut(s) 53
MluNI TGGCCA 1 cut(s) 53
Mly113I GGCGCC 1 cut(s) 324
Mox20I TGGCCA 1 cut(s) 53
MreI CGCCGGCG 1 cut(s) 320
MroNI GCCGGC 2 cut(s) 320, 326
MscI TGGCCA 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 17
Msp20I TGGCCA 1 cut(s) 53
MspI CCGG 4 cut(s) 139, 321, 327, 375
MspR9I CCNGG 3 cut(s) 50, 226, 236
MvaI CCWGG 3 cut(s) 50, 226, 236
MwoI GCNNNNNNNGC 1 cut(s) 175
NaeI GCCGGC 2 cut(s) 322, 328
NarI GGCGCC 1 cut(s) 324
NdeII GATC 1 cut(s) 4
NgoMIV GCCGGC 2 cut(s) 320, 326
NlaIII CATG 1 cut(s) 343
NlaIV GGNNCC 4 cut(s) 61, 62, 143, 325
NmeAIII GCCGAG 1 cut(s) 336
NmuCI GTSAC 1 cut(s) 370
PaqCI CACCTGC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PdiI GCCGGC 2 cut(s) 322, 328
PfeI GAWTC 1 cut(s) 116
PluTI GGCGCC 1 cut(s) 327
PpuMI RGGWCCY 2 cut(s) 60, 304
Psp5II RGGWCCY 2 cut(s) 60, 304
Psp6I CCWGG 3 cut(s) 48, 224, 234
PspGI CCWGG 3 cut(s) 48, 224, 234
PspN4I GGNNCC 4 cut(s) 61, 62, 143, 325
PspPI GGNCC 5 cut(s) 60, 213, 238, 304, 343
PspPPI RGGWCCY 2 cut(s) 60, 304
RseI CAYNNNNRTG 1 cut(s) 17
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 5 cut(s) 60, 213, 238, 304, 343
ScrFI CCNGG 3 cut(s) 50, 226, 236
SexAI ACCWGGT 1 cut(s) 234
SfoI GGCGCC 1 cut(s) 325
SgrAI CRCCGGYG 1 cut(s) 320
SinI GGWCC 4 cut(s) 60, 213, 238, 304
SmiMI CAYNNNNRTG 1 cut(s) 17
SsiI CCGC 3 cut(s) 172, 219, 318
SspDI GGCGCC 1 cut(s) 323
StyD4I CCNGG 3 cut(s) 48, 224, 234
StyI CCWWGG 1 cut(s) 300
TaiI ACGT 1 cut(s) 372
TaqI TCGA 2 cut(s) 87, 363
TfiI GAWTC 1 cut(s) 116
TseFI GTSAC 1 cut(s) 370
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 1 cut(s) 234
TspGWI ACGGA 1 cut(s) 230
VpaK11BI GGWCC 4 cut(s) 60, 213, 238, 304
ZraI GACGTC 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.