AT2G16580

Auxin-induced protein 15A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015844
Physical Location & Seq
Reverse (-)
7184422 .. 7187009
2588 bp
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UTR
Exon/CDS
Intron
AT2G16580.1

Sequence Viewer

Length: 327 bp
ATGTCCATTCTCAAGAAATCTACAAAACTGGCTCAAACAGCAATGCTTAGGCAGATTCTGAAGAGATGTTCAAGCTTGGGGAAGAAGAATGGAGGAGGAGGATATGAAGAAGTTGATCTCCCACTTGATGTACCCAAGGGACACTTCCCTGTCTACGTAGGACACAACAGAAGCAGATACATAGTTCCTATCTCTTTCTTGACCAATCTTGACTTCCAATGTCTCCTTAGAAGAGCTGAGGAAGAGTTTGGTTTTGATCATGACATGGGTCTCACCATTCCTTGTGATGAACTCTTCTTTCAAGATCTGACTTCCATGATCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

108

Amino Acids

12.3

Weight (kDa)

7.74

Isoelectric Point (pI)

53.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 35 - 107 4.8e-26 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015844)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16580 AT4G34760 AT4G36110
fragaria_vesca FvH4_1g11980
malus_domestica MD02G1133900.v1.1 MD15G1246800.v1.1
prunus_persica Prupe.7G167000_v2.0.a1
pyrus_communis pycom02g10550
rosa_chinensis RchiOBHm_Chr2g0099601
rosa_laevigata RLG00000016895
rosa_multiflora Rmu_sc0005120.1_g000006
rosa_roxburghii Rroxscaffold_2G00142940
rosa_rugosa Rorug02G0081400
rosa_samantha Rh2DG135200
rosa_wichuraiana Rw2G010100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 153
AclWI GGATC 1 cut(s) 313
AcuI CTGAAG 1 cut(s) 80
AfaI GTAC 1 cut(s) 132
AgsI TTSAA 2 cut(s) 72, 302
AjuI GAANNNNNNNTTGG 4 cut(s) 128, 160, 197, 229
AluBI AGCT 2 cut(s) 75, 236
AluI AGCT 2 cut(s) 75, 236
Alw26I GTCTC 2 cut(s) 227, 275
AlwI GGATC 1 cut(s) 313
AlwNI CAGNNNCTG 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 265
BbvCI CCTCAGC 1 cut(s) 237
BclI TGATCA 1 cut(s) 256
BcoDI GTCTC 2 cut(s) 227, 275
BglII AGATCT 1 cut(s) 304
BoxI GACNNNNGTC 1 cut(s) 267
Bpu10I CCTNAGC 2 cut(s) 47, 237
BsaAI YACGTR 1 cut(s) 157
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 33
Bse3DI GCAATG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 135
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 2 cut(s) 108, 111
BslFI GGGAC 1 cut(s) 153
BsmAI GTCTC 2 cut(s) 227, 275
BsmFI GGGAC 1 cut(s) 153
Bso31I GGTCTC 1 cut(s) 275
Bsp143I GATC 4 cut(s) 115, 256, 304, 318
BspCNI CTCAG 1 cut(s) 229
BspHI TCATGA 1 cut(s) 259
BspPI GGATC 1 cut(s) 313
BspQI GCTCTTC 1 cut(s) 226
BspTNI GGTCTC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 4 cut(s) 115, 256, 304, 318
BssT1I CCWWGG 1 cut(s) 135
Bst6I CTCTTC 4 cut(s) 56, 226, 237, 299
BstBAI YACGTR 1 cut(s) 157
BstDEI CTNAG 3 cut(s) 47, 227, 237
BstKTI GATC 4 cut(s) 118, 259, 307, 321
BstMAI GTCTC 2 cut(s) 227, 275
BstMBI GATC 4 cut(s) 115, 256, 304, 318
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstPAI GACNNNNGTC 1 cut(s) 267
BstSNI TACGTA 1 cut(s) 157
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
CaiI CAGNNNCTG 1 cut(s) 58
CciI TCATGA 1 cut(s) 259
Csp6I GTAC 1 cut(s) 131
CviAII CATG 3 cut(s) 260, 265, 316
CviJI RGCY 3 cut(s) 32, 75, 236
CviKI_1 RGCY 3 cut(s) 32, 75, 236
CviQI GTAC 1 cut(s) 131
DdeI CTNAG 3 cut(s) 47, 227, 237
DpnI GATC 4 cut(s) 117, 258, 306, 320
DpnII GATC 4 cut(s) 115, 256, 304, 318
Eam1104I CTCTTC 4 cut(s) 56, 226, 237, 299
EarI CTCTTC 4 cut(s) 56, 226, 237, 299
Eco105I TACGTA 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 80
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 3 cut(s) 263, 268, 319
FaiI YATR 5 cut(s) 105, 182, 261, 266, 317
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 1 cut(s) 153
FatI CATG 3 cut(s) 259, 264, 315
FbaI TGATCA 1 cut(s) 256
FblI GTMKAC 1 cut(s) 153
Hin1II CATG 3 cut(s) 263, 268, 319
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 1 cut(s) 55
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 3 cut(s) 60, 309, 323
Hpy188III TCNNGA 5 cut(s) 13, 199, 209, 260, 302
Hpy8I GTNNAC 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 3 cut(s) 47, 227, 237
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 3 cut(s) 263, 268, 319
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 4 cut(s) 115, 256, 304, 318
LguI GCTCTTC 1 cut(s) 226
LpnPI CCDG 2 cut(s) 14, 162
MaeII ACGT 1 cut(s) 156
MalI GATC 4 cut(s) 117, 258, 306, 320
MboI GATC 4 cut(s) 115, 256, 304, 318
MboII GAAGA 7 cut(s) 73, 94, 97, 119, 243, 254, 286
MflI RGATCY 1 cut(s) 304
MnlI CCTC 4 cut(s) 86, 89, 92, 232
MwoI GCNNNNNNNGC 1 cut(s) 38
NdeII GATC 4 cut(s) 115, 256, 304, 318
NlaIII CATG 3 cut(s) 263, 268, 319
PagI TCATGA 1 cut(s) 259
PciSI GCTCTTC 1 cut(s) 226
PfeI GAWTC 1 cut(s) 55
Ppu21I YACGTR 1 cut(s) 157
PshAI GACNNNNGTC 1 cut(s) 267
PstNI CAGNNNCTG 1 cut(s) 58
PsuI RGATCY 1 cut(s) 304
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
SapI GCTCTTC 1 cut(s) 226
Sau3AI GATC 4 cut(s) 115, 256, 304, 318
SetI ASST 3 cut(s) 77, 159, 238
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
SnaBI TACGTA 1 cut(s) 157
StyI CCWWGG 1 cut(s) 135
TaiI ACGT 1 cut(s) 159
TfiI GAWTC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 120, 303
XmiI GTMKAC 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.