Rh2DG135200

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0015844
Physical Location & Seq
Forward (+)
11376530 .. 11376865
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG135200.1

Sequence Viewer

Length: 336 bp
ATGGCGATCATCAAAAAATCATTATCAAACAAAGCATTGCTAGTGCCTCAAACGGCAGCGCTGAAGCAAATTCTCAAGAGGTGCTCGAGTTTCGGGAAGAAAAACAATGGCTACAATGAAAGTGGTCTCCCTGATGATATTCCGAAAGGGCATTTCGCTGTGTACGTAGGCGAAAACAGAAGCCGATACATAATCCCTATTTCGTGGTTGGGCAACCCGGAGTTTCAGAGCTTGCTGCAGAGGGCTGAGGAGGAGTTCGGGTTTAACCATGTCATGGGTTTGACGATTCCTTGCGAAGAAGTCGTCTTTCGCTCCCTGATAGATCAGTATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

111

Amino Acids

12.52

Weight (kDa)

8.48

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 33 - 107 1.2e-26 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015844)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16580 AT4G34760 AT4G36110
fragaria_vesca FvH4_1g11980
malus_domestica MD02G1133900.v1.1 MD15G1246800.v1.1
prunus_persica Prupe.7G167000_v2.0.a1
pyrus_communis pycom02g10550
rosa_chinensis RchiOBHm_Chr2g0099601
rosa_laevigata RLG00000016895
rosa_multiflora Rmu_sc0005120.1_g000006
rosa_roxburghii Rroxscaffold_2G00142940
rosa_rugosa Rorug02G0081400
rosa_samantha Rh2DG135200
rosa_wichuraiana Rw2G010100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 274
AcsI RAATTY 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 1 cut(s) 164
AfeI AGCGCT 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 274
AluBI AGCT 1 cut(s) 231
AluI AGCT 1 cut(s) 231
Alw21I GWGCWC 1 cut(s) 86
Alw26I GTCTC 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 85
Aor51HI AGCGCT 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 56, 235
ApoI RAATTY 1 cut(s) 69
ArsI GACNNNNNNTTYG 2 cut(s) 288, 320
AspLEI GCGC 1 cut(s) 61
AsuC2I CCSGG 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 86
BbvCI CCTCAGC 1 cut(s) 246
BbvI GCAGC 2 cut(s) 68, 222
BceAI ACGGC 1 cut(s) 69
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 236
BfoI RGCGCY 1 cut(s) 62
BisI GCNGC 2 cut(s) 57, 236
BlsI GCNGC 2 cut(s) 58, 237
Bme1390I CCNGG 1 cut(s) 218
BmeT110I CYCGRG 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 218
Bpu10I CCTNAGC 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 218
BsaAI YACGTR 1 cut(s) 166
BsaI GGTCTC 1 cut(s) 131
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse3DI GCAATG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMI GCAATG 1 cut(s) 35
BseMII CTCAG 1 cut(s) 237
BseRI GAGGAG 2 cut(s) 263, 266
BseXI GCAGC 2 cut(s) 68, 222
BsiHKAI GWGCWC 1 cut(s) 86
BsiHKCI CYCGRG 1 cut(s) 85
BsiSI CCGG 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 1 cut(s) 131
Bso31I GGTCTC 1 cut(s) 131
BsoBI CYCGRG 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 2 cut(s) 6, 322
BspCNI CTCAG 1 cut(s) 238
BspMAI CTGCAG 1 cut(s) 240
BspTNI GGTCTC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 35
BssMI GATC 2 cut(s) 6, 322
BstBAI YACGTR 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 246
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 2 cut(s) 9, 325
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 2 cut(s) 6, 322
BstSCI CCNGG 1 cut(s) 216
BstSFI CTRYAG 1 cut(s) 236
BstSNI TACGTA 1 cut(s) 166
BstV1I GCAGC 2 cut(s) 68, 222
Cac8I GCNNGC 1 cut(s) 233
CfoI GCGC 1 cut(s) 61
Csp6I GTAC 1 cut(s) 163
CspCI CAANNNNNGTGG 2 cut(s) 103, 138
CviAII CATG 2 cut(s) 269, 274
CviJI RGCY 4 cut(s) 111, 183, 231, 245
CviKI_1 RGCY 4 cut(s) 111, 183, 231, 245
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 1 cut(s) 246
DpnI GATC 2 cut(s) 8, 324
DpnII GATC 2 cut(s) 6, 322
Eco105I TACGTA 1 cut(s) 166
Eco31I GGTCTC 1 cut(s) 131
Eco47III AGCGCT 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 83
Eco88I CYCGRG 1 cut(s) 85
FaeI CATG 2 cut(s) 272, 277
FaiI YATR 3 cut(s) 191, 270, 275
FatI CATG 2 cut(s) 268, 273
Fnu4HI GCNGC 2 cut(s) 57, 236
Fsp4HI GCNGC 2 cut(s) 57, 236
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 60
GluI GCNGC 2 cut(s) 57, 236
HaeII RGCGCY 1 cut(s) 62
HapII CCGG 1 cut(s) 218
HhaI GCGC 1 cut(s) 61
Hin1II CATG 2 cut(s) 272, 277
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HinfI GANTC 1 cut(s) 286
HpaII CCGG 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 2 cut(s) 144, 228
Hpy188III TCNNGA 2 cut(s) 76, 94
Hpy8I GTNNAC 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 1 cut(s) 238
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 2 cut(s) 272, 277
HspAI GCGC 1 cut(s) 59
Kzo9I GATC 2 cut(s) 6, 322
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 3 cut(s) 144, 231, 329
Lsp1109I GCAGC 2 cut(s) 68, 222
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 165
MalI GATC 2 cut(s) 8, 324
MboI GATC 2 cut(s) 6, 322
MboII GAAGA 2 cut(s) 109, 308
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 1 cut(s) 69
MnlI CCTC 5 cut(s) 57, 72, 234, 241, 244
MseI TTAA 1 cut(s) 264
MspI CCGG 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 218
NciI CCSGG 1 cut(s) 218
NdeII GATC 2 cut(s) 6, 322
NlaIII CATG 2 cut(s) 272, 277
PaeR7I CTCGAG 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PfeI GAWTC 1 cut(s) 286
PflMI CCANNNNNTGG 1 cut(s) 274
PkrI GCNGC 2 cut(s) 58, 237
Ppu21I YACGTR 1 cut(s) 166
PspXI VCTCGAGB 1 cut(s) 85
PstI CTGCAG 1 cut(s) 240
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 2 cut(s) 57, 236
Sau3AI GATC 2 cut(s) 6, 322
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 1 cut(s) 86
SetI ASST 3 cut(s) 83, 168, 233
SfcI CTRYAG 1 cut(s) 236
Sfr274I CTCGAG 1 cut(s) 85
SlaI CTCGAG 1 cut(s) 85
SmlI CTYRAG 2 cut(s) 74, 85
SmoI CTYRAG 2 cut(s) 74, 85
SnaBI TACGTA 1 cut(s) 166
Sse9I AATT 1 cut(s) 69
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 216
TaiI ACGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 86
TasI AATT 1 cut(s) 69
TfiI GAWTC 1 cut(s) 286
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TseI GCWGC 2 cut(s) 56, 235
TspDTI ATGAA 1 cut(s) 132
Van91I CCANNNNNTGG 1 cut(s) 274
XapI RAATTY 1 cut(s) 69
XhoI CTCGAG 1 cut(s) 85
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.