RLG00000016895

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015844
Physical Location & Seq
Forward (+)
11039743 .. 11041558
1816 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016895

Sequence Viewer

Length: 477 bp
ATGGCGATCATCAAAAAATCATTATCAAACAAAGCATTGCTAGTGCCTCAAACGGCAGCGCTGAAGCAAATTCTCAAGAGGTGCTCGAGTTTCGGGAAGAAAAACAATGGCTACAATGAAAGTGGTCTCCCCGATGATATTCCAAAAGGGCATTTCGCTGTGTACGTAGGCGAAAACAGAAGCCGATACATAATCCCTATTTCGTGGTTGGGCAACCCGGAGTTTCAGAGCTTGCTGCAGAGGGCTGAGGAGGAGTTCGGGTTTAACCATGACATGGGTTTGACGATTCCTTGCGAAGAAACCAGCCTGAACCAAACCCCTAGCGACACCGCCGGAGCCGCTGCACCACCGCCTCAATTCGGTGGCCTCCCCAGCCGAGAGCCCATGGCAGCCAAATACGCGCCTGCCACTAAAGCGAAGCCTCTACCTCCCGCCTTCGCTACTGAACCTAAATTGATCAAAGCTGCTGCCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

159

Amino Acids

17.04

Weight (kDa)

9.1

Isoelectric Point (pI)

48.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 33 - 104 9.8e-25 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015844)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16580 AT4G34760 AT4G36110
fragaria_vesca FvH4_1g11980
malus_domestica MD02G1133900.v1.1 MD15G1246800.v1.1
prunus_persica Prupe.7G167000_v2.0.a1
pyrus_communis pycom02g10550
rosa_chinensis RchiOBHm_Chr2g0099601
rosa_laevigata RLG00000016895
rosa_multiflora Rmu_sc0005120.1_g000006
rosa_roxburghii Rroxscaffold_2G00142940
rosa_rugosa Rorug02G0081400
rosa_samantha Rh2DG135200
rosa_wichuraiana Rw2G010100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 274
AccII CGCG 1 cut(s) 401
AciI CCGC 4 cut(s) 330, 339, 350, 432
AcsI RAATTY 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 1 cut(s) 164
AfeI AGCGCT 1 cut(s) 60
AfiI CCNNNNNNNGG 2 cut(s) 274, 359
AluBI AGCT 2 cut(s) 231, 464
AluI AGCT 2 cut(s) 231, 464
Alw21I GWGCWC 1 cut(s) 86
Alw26I GTCTC 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 85
Aor51HI AGCGCT 1 cut(s) 60
AoxI GGCC 1 cut(s) 364
ApeKI GCWGC 6 cut(s) 56, 235, 341, 389, 464, 467
ApoI RAATTY 1 cut(s) 69
AspLEI GCGC 2 cut(s) 61, 403
AsuC2I CCSGG 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 85
BanII GRGCYC 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 86
BbvCI CCTCAGC 1 cut(s) 246
BbvI GCAGC 6 cut(s) 68, 222, 328, 401, 451, 454
BceAI ACGGC 1 cut(s) 69
BclI TGATCA 1 cut(s) 456
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 2 cut(s) 41, 321
BfmI CTRYAG 1 cut(s) 236
BfoI RGCGCY 1 cut(s) 62
BisI GCNGC 7 cut(s) 57, 236, 339, 342, 390, 465, 468
BlsI GCNGC 7 cut(s) 58, 237, 340, 343, 391, 466, 469
Bme1390I CCNGG 1 cut(s) 218
BmeT110I CYCGRG 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 337
BmrFI CCNGG 1 cut(s) 218
Bpu10I CCTNAGC 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 218
BsaAI YACGTR 1 cut(s) 166
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 384
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bsc4I CCNNNNNNNGG 2 cut(s) 274, 359
Bse3DI GCAATG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 384
BseLI CCNNNNNNNGG 2 cut(s) 274, 359
BseMI GCAATG 1 cut(s) 35
BseMII CTCAG 1 cut(s) 237
BseRI GAGGAG 2 cut(s) 263, 266
BseXI GCAGC 6 cut(s) 68, 222, 328, 401, 451, 454
BseYI CCCAGC 1 cut(s) 371
BsgI GTGCAG 1 cut(s) 327
Bsh1236I CGCG 1 cut(s) 401
BshFI GGCC 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 86
BsiHKCI CYCGRG 1 cut(s) 85
BsiSI CCGG 2 cut(s) 218, 333
BslI CCNNNNNNNGG 2 cut(s) 274, 359
BsmAI GTCTC 1 cut(s) 131
BsnI GGCC 1 cut(s) 366
Bso31I GGTCTC 1 cut(s) 131
BsoBI CYCGRG 1 cut(s) 85
Bsp1286I GDGCHC 2 cut(s) 86, 384
Bsp143I GATC 2 cut(s) 6, 456
Bsp19I CCATGG 1 cut(s) 384
BspACI CCGC 4 cut(s) 330, 339, 350, 432
BspANI GGCC 1 cut(s) 366
BspCNI CTCAG 1 cut(s) 238
BspFNI CGCG 1 cut(s) 401
BspLI GGNNCC 1 cut(s) 337
BspMAI CTGCAG 1 cut(s) 240
BspTNI GGTCTC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 2 cut(s) 6, 456
BssT1I CCWWGG 1 cut(s) 384
BstBAI YACGTR 1 cut(s) 166
BstC8I GCNNGC 2 cut(s) 233, 405
BstDEI CTNAG 1 cut(s) 246
BstDSI CCRYGG 1 cut(s) 384
BstFNI CGCG 1 cut(s) 401
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 2 cut(s) 61, 403
BstKTI GATC 2 cut(s) 9, 459
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 2 cut(s) 6, 456
BstMWI GCNNNNNNNGC 4 cut(s) 338, 372, 398, 413
BstSCI CCNGG 1 cut(s) 216
BstSFI CTRYAG 1 cut(s) 236
BstSNI TACGTA 1 cut(s) 166
BstUI CGCG 1 cut(s) 401
BstV1I GCAGC 6 cut(s) 68, 222, 328, 401, 451, 454
BsuRI GGCC 1 cut(s) 366
BtgI CCRYGG 1 cut(s) 384
Cac8I GCNNGC 2 cut(s) 233, 405
CfoI GCGC 2 cut(s) 61, 403
Csp6I GTAC 1 cut(s) 163
CspCI CAANNNNNGTGG 2 cut(s) 103, 138
CviAII CATG 3 cut(s) 269, 274, 385
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 1 cut(s) 246
DpnI GATC 2 cut(s) 8, 458
DpnII GATC 2 cut(s) 6, 456
Eco105I TACGTA 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 384
Eco24I GRGCYC 1 cut(s) 384
Eco31I GGTCTC 1 cut(s) 131
Eco47III AGCGCT 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 83
Eco88I CYCGRG 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 384
EcoT38I GRGCYC 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 3 cut(s) 272, 277, 388
FaiI YATR 4 cut(s) 191, 270, 275, 386
FatI CATG 3 cut(s) 268, 273, 384
FauI CCCGC 1 cut(s) 439
FbaI TGATCA 1 cut(s) 456
Fnu4HI GCNGC 7 cut(s) 57, 236, 339, 342, 390, 465, 468
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 7 cut(s) 57, 236, 339, 342, 390, 465, 468
FspBI CTAG 2 cut(s) 41, 321
GlaI GCGC 2 cut(s) 60, 402
GluI GCNGC 7 cut(s) 57, 236, 339, 342, 390, 465, 468
GsaI CCCAGC 1 cut(s) 375
HaeII RGCGCY 1 cut(s) 62
HaeIII GGCC 1 cut(s) 366
HapII CCGG 2 cut(s) 218, 333
HhaI GCGC 2 cut(s) 61, 403
Hin1II CATG 3 cut(s) 272, 277, 388
Hin6I GCGC 2 cut(s) 59, 401
HinP1I GCGC 2 cut(s) 59, 401
HinfI GANTC 1 cut(s) 286
HpaII CCGG 2 cut(s) 218, 333
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 2 cut(s) 76, 94
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 445
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 2 cut(s) 238, 344
HpyF10VI GCNNNNNNNGC 4 cut(s) 338, 372, 398, 413
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 3 cut(s) 272, 277, 388
HspAI GCGC 2 cut(s) 59, 401
Ksp22I TGATCA 1 cut(s) 456
Kzo9I GATC 2 cut(s) 6, 456
LmnI GCTCC 1 cut(s) 335
LpnPI CCDG 6 cut(s) 231, 316, 320, 346, 385, 417
Lsp1109I GCAGC 6 cut(s) 68, 222, 328, 401, 451, 454
MaeI CTAG 2 cut(s) 41, 321
MaeII ACGT 1 cut(s) 165
MalI GATC 2 cut(s) 8, 458
MboI GATC 2 cut(s) 6, 456
MboII GAAGA 2 cut(s) 109, 308
MhlI GDGCHC 2 cut(s) 86, 384
MluCI AATT 3 cut(s) 69, 356, 452
MnlI CCTC 9 cut(s) 57, 72, 234, 241, 244, 363, 377, 432, 438
MseI TTAA 1 cut(s) 264
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 2 cut(s) 218, 333
MspR9I CCNGG 1 cut(s) 218
MvnI CGCG 1 cut(s) 401
MwoI GCNNNNNNNGC 4 cut(s) 338, 372, 398, 413
NciI CCSGG 1 cut(s) 218
NcoI CCATGG 1 cut(s) 384
NdeII GATC 2 cut(s) 6, 456
NlaIII CATG 3 cut(s) 272, 277, 388
NlaIV GGNNCC 1 cut(s) 337
NmeAIII GCCGAG 1 cut(s) 401
PaeR7I CTCGAG 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PfeI GAWTC 1 cut(s) 286
PflMI CCANNNNNTGG 1 cut(s) 274
PkrI GCNGC 7 cut(s) 58, 237, 340, 343, 391, 466, 469
Ppu21I YACGTR 1 cut(s) 166
PspFI CCCAGC 1 cut(s) 371
PspN4I GGNNCC 1 cut(s) 337
PspXI VCTCGAGB 1 cut(s) 85
PstI CTGCAG 1 cut(s) 240
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 7 cut(s) 57, 236, 339, 342, 390, 465, 468
Sau3AI GATC 2 cut(s) 6, 456
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 2 cut(s) 86, 384
SetI ASST 6 cut(s) 83, 168, 233, 430, 451, 466
SfcI CTRYAG 1 cut(s) 236
Sfr274I CTCGAG 1 cut(s) 85
SlaI CTCGAG 1 cut(s) 85
SmlI CTYRAG 2 cut(s) 74, 85
SmoI CTYRAG 2 cut(s) 74, 85
SnaBI TACGTA 1 cut(s) 166
Sse9I AATT 3 cut(s) 69, 356, 452
SsiI CCGC 4 cut(s) 330, 339, 350, 432
SspMI CTAG 2 cut(s) 41, 321
StyD4I CCNGG 1 cut(s) 216
StyI CCWWGG 1 cut(s) 384
TaiI ACGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 86
TasI AATT 3 cut(s) 69, 356, 452
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 1 cut(s) 286
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TseI GCWGC 6 cut(s) 56, 235, 341, 389, 464, 467
TspDTI ATGAA 1 cut(s) 132
Van91I CCANNNNNTGG 1 cut(s) 274
XapI RAATTY 1 cut(s) 69
XhoI CTCGAG 1 cut(s) 85
XspI CTAG 2 cut(s) 41, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.