MD02G1133900.v1.1

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0015844
Physical Location & Seq
Forward (+)
10836759 .. 10837079
321 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1133900.v1.1.491

Sequence Viewer

Length: 321 bp
ATGGCTATCAGCAAAAAATCAAACAAGCTACCTCAAACAGCAGCTTTGATGCAAATTCTGAAGAGATGCTCAAGTTTTGGGAAGAAAAATGGGTACAACAATGAAGGTGGTCTTCCAGATGATGTGCCAAAAGGGCATTTTGCAGTGTATGTTGGTGAAAACAGAAGCAGATACATCATCCCAATTTCATGGCTGGGGCATCCAGAGTTTCAAACTCTTCTTCAAAGATCTGAGGAGGAGTTTGGATTTAACCACGACATGGGTTTAACTATTCCTTGCGAAGAAGTTGTTTTTCGATCTCTAATCCACCAAATTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

107

Amino Acids

12.07

Weight (kDa)

7.82

Isoelectric Point (pI)

48.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 28 - 103 1.5e-28 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015844)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16580 AT4G34760 AT4G36110
fragaria_vesca FvH4_1g11980
malus_domestica MD02G1133900.v1.1 MD15G1246800.v1.1
prunus_persica Prupe.7G167000_v2.0.a1
pyrus_communis pycom02g10550
rosa_chinensis RchiOBHm_Chr2g0099601
rosa_laevigata RLG00000016895
rosa_multiflora Rmu_sc0005120.1_g000006
rosa_roxburghii Rroxscaffold_2G00142940
rosa_rugosa Rorug02G0081400
rosa_samantha Rh2DG135200
rosa_wichuraiana Rw2G010100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 259
AcsI RAATTY 2 cut(s) 54, 312
AcuI CTGAAG 1 cut(s) 80
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 259
AgsI TTSAA 2 cut(s) 212, 224
AluBI AGCT 2 cut(s) 28, 44
AluI AGCT 2 cut(s) 28, 44
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 2 cut(s) 54, 312
AsuHPI GGTGA 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 53
BglI GCCNNNNNGGC 1 cut(s) 133
BglII AGATCT 1 cut(s) 227
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BmsI GCATC 3 cut(s) 39, 56, 208
BpiI GAAGAC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 259
BseGI GGATG 2 cut(s) 177, 199
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 222
BseRI GAGGAG 2 cut(s) 248, 251
BseXI GCAGC 1 cut(s) 53
BseYI CCCAGC 1 cut(s) 193
BslI CCNNNNNNNGG 1 cut(s) 259
Bsp143I GATC 2 cut(s) 227, 296
BspCNI CTCAG 1 cut(s) 223
BssMI GATC 2 cut(s) 227, 296
Bst6I CTCTTC 2 cut(s) 56, 222
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 2 cut(s) 177, 199
BstKTI GATC 2 cut(s) 230, 299
BstMBI GATC 2 cut(s) 227, 296
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 53
BstV2I GAAGAC 1 cut(s) 104
BstX2I RGATCY 1 cut(s) 227
BstXI CCANNNNNNTGG 1 cut(s) 189
BstYI RGATCY 1 cut(s) 227
BtsCI GGATG 2 cut(s) 177, 199
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 150
Csp6I GTAC 1 cut(s) 94
CspCI CAANNNNNGTGG 2 cut(s) 88, 123
CviAII CATG 2 cut(s) 189, 259
CviJI RGCY 4 cut(s) 5, 28, 44, 193
CviKI_1 RGCY 4 cut(s) 5, 28, 44, 193
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 1 cut(s) 231
DpnI GATC 2 cut(s) 229, 298
DpnII GATC 2 cut(s) 227, 296
Eam1104I CTCTTC 2 cut(s) 56, 222
EarI CTCTTC 2 cut(s) 56, 222
Eco57I CTGAAG 1 cut(s) 80
FaeI CATG 2 cut(s) 192, 262
FaiI YATR 3 cut(s) 150, 190, 260
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FatI CATG 2 cut(s) 188, 258
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 2 cut(s) 164, 186
Fsp4HI GCNGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 42
GsaI CCCAGC 1 cut(s) 197
Hin1II CATG 2 cut(s) 192, 262
HphI GGTGA 1 cut(s) 167
Hpy188I TCNGA 2 cut(s) 60, 232
Hpy188III TCNNGA 2 cut(s) 116, 203
HpyAV CCTTC 1 cut(s) 98
HpyCH4V TGCA 2 cut(s) 52, 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 2 cut(s) 192, 262
Kzo9I GATC 2 cut(s) 227, 296
LpnPI CCDG 3 cut(s) 129, 179, 216
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 3 cut(s) 39, 56, 208
MalI GATC 2 cut(s) 229, 298
MboI GATC 2 cut(s) 227, 296
MboII GAAGA 6 cut(s) 73, 94, 104, 209, 212, 293
MflI RGATCY 1 cut(s) 227
MluCI AATT 3 cut(s) 54, 183, 312
MnlI CCTC 3 cut(s) 42, 226, 229
MseI TTAA 2 cut(s) 249, 266
MwoI GCNNNNNNNGC 1 cut(s) 133
NdeII GATC 2 cut(s) 227, 296
NlaIII CATG 2 cut(s) 192, 262
PflMI CCANNNNNTGG 1 cut(s) 259
PkrI GCNGC 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 193
PsuI RGATCY 1 cut(s) 227
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SaqAI TTAA 2 cut(s) 249, 266
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 2 cut(s) 227, 296
SetI ASST 4 cut(s) 30, 34, 46, 109
SfaNI GCATC 3 cut(s) 39, 56, 208
SgeI CNNG 9 cut(s) 37, 84, 128, 201, 206, 215, 266, 271, 288
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
Sse9I AATT 3 cut(s) 54, 183, 312
TaqI TCGA 1 cut(s) 295
TasI AATT 3 cut(s) 54, 183, 312
Tru1I TTAA 2 cut(s) 249, 266
Tru9I TTAA 2 cut(s) 249, 266
TscAI CASTG 1 cut(s) 150
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 2 cut(s) 117, 177
TspRI CASTG 1 cut(s) 150
Van91I CCANNNNNTGG 1 cut(s) 259
XapI RAATTY 2 cut(s) 54, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.