AT4G36110

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015844
Physical Location & Seq
Forward (+)
17089934 .. 17090873
940 bp
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UTR
Exon/CDS
Intron
AT4G36110.1

Sequence Viewer

Length: 315 bp
ATGGCGATAAAGAAGTCGAACAAAGCGGCGTTGTCTCAAGCAGCATCTCTAAAGCAAATCTTGAAGAGGTGCTCAAGTCTAGGAAAGAAGAATCAAGGTAATTGCTACTTCAACGACGTGCCAAAAGGTCACTTCCCGGTCTACGTCGGTCAACACCGAAGTCGCTATGTGGTCCCAATCTCGTGGCTAGATCATCATGAGTTCCAGTCACTCCTCCAACTAGCCGAGGAAGAGTTTGGTTTCGAGCACGAGATGGGTCTCACTATCCCTTGTGATGAAGTCGTCTTTCGTTCTCTCATCTCAATGTTCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

104

Amino Acids

11.91

Weight (kDa)

8.86

Isoelectric Point (pI)

47.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 22 - 102 7.7e-28 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015844)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16580 AT4G34760 AT4G36110
fragaria_vesca FvH4_1g11980
malus_domestica MD02G1133900.v1.1 MD15G1246800.v1.1
prunus_persica Prupe.7G167000_v2.0.a1
pyrus_communis pycom02g10550
rosa_chinensis RchiOBHm_Chr2g0099601
rosa_laevigata RLG00000016895
rosa_multiflora Rmu_sc0005120.1_g000006
rosa_roxburghii Rroxscaffold_2G00142940
rosa_rugosa Rorug02G0081400
rosa_samantha Rh2DG135200
rosa_wichuraiana Rw2G010100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 141
AciI CCGC 1 cut(s) 26
AgsI TTSAA 2 cut(s) 64, 112
AjiI CACGTC 1 cut(s) 118
Alw21I GWGCWC 2 cut(s) 74, 249
Alw26I GTCTC 2 cut(s) 39, 263
ApeKI GCWGC 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 172
AsuC2I CCSGG 1 cut(s) 137
AvaII GGWCC 1 cut(s) 172
BauI CACGAG 2 cut(s) 181, 248
Bbv12I GWGCWC 2 cut(s) 74, 249
BbvI GCAGC 1 cut(s) 53
BccI CCATC 1 cut(s) 247
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 2 cut(s) 39, 263
BfaI CTAG 3 cut(s) 80, 188, 221
BisI GCNGC 2 cut(s) 27, 42
BlsI GCNGC 2 cut(s) 28, 43
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 172
BmgBI CACGTC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 137
BmsI GCATC 1 cut(s) 53
BpuEI CTTGAG 2 cut(s) 21, 58
BpuMI CCSGG 1 cut(s) 137
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 205
BseDI CCNNGG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 1 cut(s) 53
BsiHKAI GWGCWC 2 cut(s) 74, 249
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 158
BsmAI GTCTC 2 cut(s) 39, 263
BsmFI GGGAC 1 cut(s) 158
Bso31I GGTCTC 1 cut(s) 263
Bsp1286I GDGCHC 2 cut(s) 74, 249
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 26
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 174
BspTNI GGTCTC 1 cut(s) 263
BsrI ACTGG 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 1 cut(s) 190
BssSI CACGAG 2 cut(s) 181, 248
Bst2BI CACGAG 2 cut(s) 181, 248
Bst6I CTCTTC 2 cut(s) 59, 225
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 2 cut(s) 39, 263
BstMBI GATC 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 53
BstXI CCANNNNNNTGG 1 cut(s) 183
BtrI CACGTC 1 cut(s) 118
CciI TCATGA 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 172
CviAII CATG 1 cut(s) 197
CviJI RGCY 2 cut(s) 187, 224
CviKI_1 RGCY 2 cut(s) 187, 224
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
Eam1104I CTCTTC 2 cut(s) 59, 225
EarI CTCTTC 2 cut(s) 59, 225
Eco31I GGTCTC 1 cut(s) 263
Eco47I GGWCC 1 cut(s) 172
FaeI CATG 1 cut(s) 200
FaiI YATR 2 cut(s) 168, 198
FalI AAGNNNNNCTT 2 cut(s) 44, 76
FaqI GGGAC 1 cut(s) 158
FatI CATG 1 cut(s) 196
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 27, 42
Fsp4HI GCNGC 2 cut(s) 27, 42
FspBI CTAG 3 cut(s) 80, 188, 221
GluI GCNGC 2 cut(s) 27, 42
HapII CCGG 1 cut(s) 137
Hin1II CATG 1 cut(s) 200
HincII GTYRAC 1 cut(s) 152
HindII GTYRAC 1 cut(s) 152
HinfI GANTC 1 cut(s) 91
HpaII CCGG 1 cut(s) 137
Hpy166II GTNNAC 2 cut(s) 142, 152
Hpy188I TCNGA 1 cut(s) 311
Hpy188III TCNNGA 2 cut(s) 61, 197
Hpy8I GTNNAC 2 cut(s) 142, 152
Hpy99I CGWCG 2 cut(s) 119, 149
HpyCH4IV ACGT 2 cut(s) 117, 144
HpySE526I ACGT 2 cut(s) 117, 144
Hsp92II CATG 1 cut(s) 200
Kzo9I GATC 1 cut(s) 190
LpnPI CCDG 2 cut(s) 150, 218
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 1 cut(s) 53
MaeI CTAG 3 cut(s) 80, 188, 221
MaeII ACGT 2 cut(s) 117, 144
MaeIII GTNAC 2 cut(s) 128, 207
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 3 cut(s) 76, 100, 242
MhlI GDGCHC 2 cut(s) 74, 249
MluCI AATT 1 cut(s) 100
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 3 cut(s) 60, 220, 224
MslI CAYNNNNRTG 1 cut(s) 302
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 137
NciI CCSGG 1 cut(s) 137
NdeII GATC 1 cut(s) 190
NlaIII CATG 1 cut(s) 200
NlaIV GGNNCC 1 cut(s) 174
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 2 cut(s) 128, 207
PagI TCATGA 1 cut(s) 196
PfeI GAWTC 1 cut(s) 91
PkrI GCNGC 2 cut(s) 28, 43
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 1 cut(s) 172
RseI CAYNNNNRTG 1 cut(s) 302
SatI GCNGC 2 cut(s) 27, 42
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 137
SduI GDGCHC 2 cut(s) 74, 249
SetI ASST 5 cut(s) 71, 100, 120, 130, 147
SfaNI GCATC 1 cut(s) 53
SinI GGWCC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 302
SmlI CTYRAG 2 cut(s) 36, 73
SmoI CTYRAG 2 cut(s) 36, 73
Sse9I AATT 1 cut(s) 100
SsiI CCGC 1 cut(s) 26
SspMI CTAG 3 cut(s) 80, 188, 221
StyD4I CCNGG 1 cut(s) 135
TaiI ACGT 2 cut(s) 120, 147
TaqI TCGA 2 cut(s) 17, 243
TaqII GACCGA 1 cut(s) 137
TasI AATT 1 cut(s) 100
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 1 cut(s) 91
TseFI GTSAC 2 cut(s) 128, 207
TseI GCWGC 1 cut(s) 41
Tsp45I GTSAC 2 cut(s) 128, 207
TspDTI ATGAA 1 cut(s) 291
VpaK11BI GGWCC 1 cut(s) 172
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 3 cut(s) 80, 188, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.