FvH4_1g11980

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015844
Physical Location & Seq
Forward (+)
6549656 .. 6549991
336 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11980.t1

Sequence Viewer

Length: 336 bp
ATGGCGATCATCAAGAAGTCATTATCGAACAAAGCACTGCTGCTGCCACAAACGACTGCCCTGAAGCAAATTCTGAAGAGGTGCTCGAGTTTCGGGAAGAAGAACAATGTCTACAATGAAAGTGGTCTACCCGATGATGTTCCCAAAGGGCATTTCGCTGTGTACGTAGGCGAAAACAGAAGCCGATATATAATCCCGATATCGTGGTTGGGGCATCCTGAGTTTCAGAGCCTGCTGCAGAGGGCTGAGGAGGAGTACGGGTTTAACCATGACATGGGTTTGACGATTCCTTGCGAGGAAGTCGTCTTTCGCTCCTTGATAGACCAGTATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

112

Amino Acids

12.65

Weight (kDa)

7.72

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 22 - 107 1.6e-28 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015844)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16580 AT4G34760 AT4G36110
fragaria_vesca FvH4_1g11980
malus_domestica MD02G1133900.v1.1 MD15G1246800.v1.1
prunus_persica Prupe.7G167000_v2.0.a1
pyrus_communis pycom02g10550
rosa_chinensis RchiOBHm_Chr2g0099601
rosa_laevigata RLG00000016895
rosa_multiflora Rmu_sc0005120.1_g000006
rosa_roxburghii Rroxscaffold_2G00142940
rosa_rugosa Rorug02G0081400
rosa_samantha Rh2DG135200
rosa_wichuraiana Rw2G010100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 274
AccI GTMKAC 2 cut(s) 111, 127
AcsI RAATTY 1 cut(s) 69
AcuI CTGAAG 2 cut(s) 83, 95
AfaI GTAC 2 cut(s) 164, 257
AfiI CCNNNNNNNGG 1 cut(s) 274
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
Alw21I GWGCWC 1 cut(s) 86
AlwNI CAGNNNCTG 1 cut(s) 232
Ama87I CYCGRG 1 cut(s) 85
ApeKI GCWGC 3 cut(s) 40, 43, 235
ApoI RAATTY 1 cut(s) 69
AvaI CYCGRG 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 86
BbvCI CCTCAGC 1 cut(s) 246
BbvI GCAGC 3 cut(s) 27, 30, 222
BfmI CTRYAG 1 cut(s) 236
BisI GCNGC 3 cut(s) 41, 44, 236
BlsI GCNGC 3 cut(s) 42, 45, 237
BmeT110I CYCGRG 1 cut(s) 85
BmsI GCATC 1 cut(s) 223
Bpu10I CCTNAGC 1 cut(s) 246
BsaAI YACGTR 1 cut(s) 166
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 325
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 2 cut(s) 210, 237
BseNI ACTGG 1 cut(s) 325
BseRI GAGGAG 2 cut(s) 263, 266
BseXI GCAGC 3 cut(s) 27, 30, 222
BsiHKAI GWGCWC 1 cut(s) 86
BsiHKCI CYCGRG 1 cut(s) 85
BslI CCNNNNNNNGG 1 cut(s) 274
BsoBI CYCGRG 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 1 cut(s) 6
BspCNI CTCAG 2 cut(s) 211, 238
BspMAI CTGCAG 1 cut(s) 240
BsrI ACTGG 1 cut(s) 325
BssMI GATC 1 cut(s) 6
Bst6I CTCTTC 1 cut(s) 71
BstBAI YACGTR 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 2 cut(s) 219, 246
BstF5I GGATG 1 cut(s) 214
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstSFI CTRYAG 1 cut(s) 236
BstSNI TACGTA 1 cut(s) 166
BstV1I GCAGC 3 cut(s) 27, 30, 222
BtsCI GGATG 1 cut(s) 214
BtsI GCAGTG 1 cut(s) 35
BtsIMutI CAGTG 1 cut(s) 35
Cac8I GCNNGC 1 cut(s) 233
CaiI CAGNNNCTG 1 cut(s) 232
Csp6I GTAC 2 cut(s) 163, 256
CspCI CAANNNNNGTGG 2 cut(s) 103, 138
CviAII CATG 2 cut(s) 269, 274
CviJI RGCY 3 cut(s) 183, 231, 245
CviKI_1 RGCY 3 cut(s) 183, 231, 245
CviQI GTAC 2 cut(s) 163, 256
DdeI CTNAG 2 cut(s) 219, 246
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Eco105I TACGTA 1 cut(s) 166
Eco32I GATATC 1 cut(s) 201
Eco57I CTGAAG 2 cut(s) 83, 95
Eco88I CYCGRG 1 cut(s) 85
EcoRV GATATC 1 cut(s) 201
FaeI CATG 2 cut(s) 272, 277
FaiI YATR 4 cut(s) 189, 191, 270, 275
FatI CATG 2 cut(s) 268, 273
FblI GTMKAC 2 cut(s) 111, 127
Fnu4HI GCNGC 3 cut(s) 41, 44, 236
FokI GGATG 1 cut(s) 201
Fsp4HI GCNGC 3 cut(s) 41, 44, 236
GluI GCNGC 3 cut(s) 41, 44, 236
Hin1II CATG 2 cut(s) 272, 277
HinfI GANTC 1 cut(s) 286
Hpy166II GTNNAC 3 cut(s) 112, 128, 163
Hpy188I TCNGA 2 cut(s) 75, 228
Hpy188III TCNNGA 4 cut(s) 13, 94, 196, 218
Hpy8I GTNNAC 3 cut(s) 112, 128, 163
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 1 cut(s) 238
HpyF3I CTNAG 2 cut(s) 219, 246
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 2 cut(s) 272, 277
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 317
LpnPI CCDG 3 cut(s) 74, 231, 245
Lsp1109I GCAGC 3 cut(s) 27, 30, 222
LweI GCATC 1 cut(s) 223
MaeII ACGT 1 cut(s) 165
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 3 cut(s) 88, 109, 112
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 1 cut(s) 69
MnlI CCTC 5 cut(s) 72, 234, 241, 244, 289
MseI TTAA 1 cut(s) 264
NdeII GATC 1 cut(s) 6
NlaIII CATG 2 cut(s) 272, 277
PaeR7I CTCGAG 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PfeI GAWTC 1 cut(s) 286
PflMI CCANNNNNTGG 1 cut(s) 274
PkrI GCNGC 3 cut(s) 42, 45, 237
Ppu21I YACGTR 1 cut(s) 166
PspXI VCTCGAGB 1 cut(s) 85
PsrI GAACNNNNNNTAC 2 cut(s) 95, 127
PstI CTGCAG 1 cut(s) 240
PstNI CAGNNNCTG 1 cut(s) 232
RsaI GTAC 2 cut(s) 164, 257
RsaNI GTAC 2 cut(s) 163, 256
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 3 cut(s) 41, 44, 236
Sau3AI GATC 1 cut(s) 6
SduI GDGCHC 1 cut(s) 86
SetI ASST 2 cut(s) 83, 168
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 1 cut(s) 236
Sfr274I CTCGAG 1 cut(s) 85
SlaI CTCGAG 1 cut(s) 85
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
SnaBI TACGTA 1 cut(s) 166
Sse9I AATT 1 cut(s) 69
TaiI ACGT 1 cut(s) 168
TaqI TCGA 2 cut(s) 26, 86
TasI AATT 1 cut(s) 69
TfiI GAWTC 1 cut(s) 286
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 1 cut(s) 42
TseI GCWGC 3 cut(s) 40, 43, 235
TspDTI ATGAA 1 cut(s) 132
TspRI CASTG 1 cut(s) 42
Van91I CCANNNNNTGG 1 cut(s) 274
XapI RAATTY 1 cut(s) 69
XhoI CTCGAG 1 cut(s) 85
XmiI GTMKAC 2 cut(s) 111, 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.