AT4G34760

Auxin-induced protein 15A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015844
Physical Location & Seq
Reverse (-)
16582183 .. 16583075
893 bp
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UTR
Exon/CDS
Intron
AT4G34760.1

Sequence Viewer

Length: 324 bp
ATGGCTATAATGAAGAAAACTTCAAAACTCACTCAAACAGCAATGCTGAAGCAGATTCTGAAGAGATGCTCGAGCTTAGGGAAGAAGAATGGAGGAGGGTACGATGAAGATTGCCTTCCGCTTGACGTACCAAAGGGACACTTCCCTGTCTATGTCGGAGAGAACAGAAGCAGATACATTGTCCCAATCTCCTTCTTGACACATCCTGAGTTCCAATCTCTCTTACAACGAGCCGAGGAAGAATTTGGATTCGATCACGACATGGGTCTCACCATTCCTTGTGATGAACTCGTTTTTCAAACCCTAACATCCATGATCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

107

Amino Acids

12.14

Weight (kDa)

6.82

Isoelectric Point (pI)

47.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 25 - 106 4.6e-29 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015844)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16580 AT4G34760 AT4G36110
fragaria_vesca FvH4_1g11980
malus_domestica MD02G1133900.v1.1 MD15G1246800.v1.1
prunus_persica Prupe.7G167000_v2.0.a1
pyrus_communis pycom02g10550
rosa_chinensis RchiOBHm_Chr2g0099601
rosa_laevigata RLG00000016895
rosa_multiflora Rmu_sc0005120.1_g000006
rosa_roxburghii Rroxscaffold_2G00142940
rosa_rugosa Rorug02G0081400
rosa_samantha Rh2DG135200
rosa_wichuraiana Rw2G010100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 119
AclWI GGATC 1 cut(s) 310
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 2 cut(s) 68, 80
AfaI GTAC 2 cut(s) 101, 129
AgsI TTSAA 2 cut(s) 24, 299
AluBI AGCT 1 cut(s) 75
AluI AGCT 1 cut(s) 75
Alw26I GTCTC 1 cut(s) 272
AlwI GGATC 1 cut(s) 310
AlwNI CAGNNNCTG 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 70
ApoI RAATTY 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 262
AvaI CYCGRG 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 272
BmeT110I CYCGRG 1 cut(s) 70
BmsI GCATC 1 cut(s) 56
BoxI GACNNNNGTC 1 cut(s) 264
Bpu10I CCTNAGC 1 cut(s) 76
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 234
Bse3DI GCAATG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 2 cut(s) 202, 308
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 198
BseRI GAGGAG 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 70
BslFI GGGAC 2 cut(s) 150, 167
BsmAI GTCTC 1 cut(s) 272
BsmFI GGGAC 2 cut(s) 150, 167
Bso31I GGTCTC 1 cut(s) 272
BsoBI CYCGRG 1 cut(s) 70
Bsp143I GATC 2 cut(s) 253, 315
BspACI CCGC 1 cut(s) 119
BspCNI CTCAG 1 cut(s) 199
BspPI GGATC 1 cut(s) 310
BspTNI GGTCTC 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 2 cut(s) 253, 315
Bst6I CTCTTC 1 cut(s) 56
BstDEI CTNAG 2 cut(s) 76, 207
BstF5I GGATG 2 cut(s) 202, 308
BstKTI GATC 2 cut(s) 256, 318
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 2 cut(s) 253, 315
BstPAI GACNNNNGTC 1 cut(s) 264
BtsCI GGATG 2 cut(s) 202, 308
CaiI CAGNNNCTG 1 cut(s) 58
Csp6I GTAC 2 cut(s) 100, 128
CviAII CATG 2 cut(s) 262, 313
CviJI RGCY 3 cut(s) 5, 75, 233
CviKI_1 RGCY 3 cut(s) 5, 75, 233
CviQI GTAC 2 cut(s) 100, 128
DdeI CTNAG 2 cut(s) 76, 207
DpnI GATC 2 cut(s) 255, 317
DpnII GATC 2 cut(s) 253, 315
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco31I GGTCTC 1 cut(s) 272
Eco57I CTGAAG 2 cut(s) 68, 80
Eco88I CYCGRG 1 cut(s) 70
FaeI CATG 2 cut(s) 265, 316
FaiI YATR 4 cut(s) 8, 153, 263, 314
FalI AAGNNNNNCTT 4 cut(s) 99, 131, 125, 157
FaqI GGGAC 2 cut(s) 150, 167
FatI CATG 2 cut(s) 261, 312
FokI GGATG 2 cut(s) 189, 295
Hin1II CATG 2 cut(s) 265, 316
HinfI GANTC 2 cut(s) 55, 249
HphI GGTGA 1 cut(s) 262
Hpy188I TCNGA 3 cut(s) 60, 158, 320
Hpy188III TCNNGA 3 cut(s) 196, 206, 257
HpyAV CCTTC 2 cut(s) 125, 202
HpyCH4IV ACGT 1 cut(s) 126
HpyF3I CTNAG 2 cut(s) 76, 207
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 2 cut(s) 265, 316
Kzo9I GATC 2 cut(s) 253, 315
LpnPI CCDG 2 cut(s) 159, 219
LweI GCATC 1 cut(s) 56
MaeII ACGT 1 cut(s) 126
MalI GATC 2 cut(s) 255, 317
MboI GATC 2 cut(s) 253, 315
MboII GAAGA 6 cut(s) 25, 73, 94, 97, 119, 251
MluCI AATT 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 3 cut(s) 86, 89, 229
NdeII GATC 2 cut(s) 253, 315
NlaIII CATG 2 cut(s) 265, 316
NmeAIII GCCGAG 1 cut(s) 259
PaeR7I CTCGAG 1 cut(s) 70
PfeI GAWTC 2 cut(s) 55, 249
PshAI GACNNNNGTC 1 cut(s) 264
PspXI VCTCGAGB 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 58
RsaI GTAC 2 cut(s) 101, 129
RsaNI GTAC 2 cut(s) 100, 128
Sau3AI GATC 2 cut(s) 253, 315
SetI ASST 2 cut(s) 77, 129
SfaNI GCATC 1 cut(s) 56
Sfr274I CTCGAG 1 cut(s) 70
SlaI CTCGAG 1 cut(s) 70
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
Sse9I AATT 1 cut(s) 242
SsiI CCGC 1 cut(s) 119
TaiI ACGT 1 cut(s) 129
TaqI TCGA 2 cut(s) 71, 252
TasI AATT 1 cut(s) 242
TfiI GAWTC 2 cut(s) 55, 249
TspDTI ATGAA 3 cut(s) 26, 120, 300
XapI RAATTY 1 cut(s) 242
XhoI CTCGAG 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.