MD15G1246800.v1.1

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0015844
Physical Location & Seq
Forward (+)
20468388 .. 20468708
321 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1246800.v1.1.491

Sequence Viewer

Length: 321 bp
ATGGCTATCAGCAAAAAATCAAACAAGCTACCTCAAACAGCAGCTTTAAAGCAAATTCTGAAGAGATGCTCAAGCTTTGGGAAGAAAAATGTGTACAACAATGAATGTGGTCTTCCGGACGATGTGCCAAAGGGGCATTTTGCAGTGTATGTCGGTGAAAACAGAAGCAGATATATTATCCCAATTACATGGCTGGGGCATCCAGAGTTCCAAACTCTTCTCCAAAGAGCTGAGGAGGAGTTTGGATTTAACCACGACATGGGTTTAACTATTCCTTGCGAAGAAGTCGTTTTTCGCTCTCTAATCTACCAAATATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

107

Amino Acids

12.18

Weight (kDa)

8.46

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 17 - 102 1.6e-28 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015844)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16580 AT4G34760 AT4G36110
fragaria_vesca FvH4_1g11980
malus_domestica MD02G1133900.v1.1 MD15G1246800.v1.1
prunus_persica Prupe.7G167000_v2.0.a1
pyrus_communis pycom02g10550
rosa_chinensis RchiOBHm_Chr2g0099601
rosa_laevigata RLG00000016895
rosa_multiflora Rmu_sc0005120.1_g000006
rosa_roxburghii Rroxscaffold_2G00142940
rosa_rugosa Rorug02G0081400
rosa_samantha Rh2DG135200
rosa_wichuraiana Rw2G010100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 259
AccIII TCCGGA 1 cut(s) 115
AcsI RAATTY 1 cut(s) 54
AcuI CTGAAG 1 cut(s) 80
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 259
AluBI AGCT 4 cut(s) 28, 44, 75, 230
AluI AGCT 4 cut(s) 28, 44, 75, 230
Aor13HI TCCGGA 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 104
BbvCI CCTCAGC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 53
BglI GCCNNNNNGGC 1 cut(s) 133
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BmsI GCATC 2 cut(s) 56, 208
BpiI GAAGAC 1 cut(s) 104
Bpu10I CCTNAGC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 55
BsaWI WCCGGW 1 cut(s) 115
Bsc4I CCNNNNNNNGG 1 cut(s) 259
BseAI TCCGGA 1 cut(s) 115
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 222
BseRI GAGGAG 2 cut(s) 248, 251
BseXI GCAGC 1 cut(s) 53
BseYI CCCAGC 1 cut(s) 193
BsiSI CCGG 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 259
Bsp13I TCCGGA 1 cut(s) 115
Bsp1407I TGTACA 1 cut(s) 93
BspCNI CTCAG 1 cut(s) 223
BspEI TCCGGA 1 cut(s) 115
BsrGI TGTACA 1 cut(s) 93
Bst6I CTCTTC 2 cut(s) 56, 222
BstAUI TGTACA 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 53
BstV2I GAAGAC 1 cut(s) 104
BstXI CCANNNNNNTGG 1 cut(s) 189
BtsCI GGATG 1 cut(s) 199
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 150
Csp6I GTAC 1 cut(s) 94
CspCI CAANNNNNGTGG 2 cut(s) 88, 123
CviAII CATG 2 cut(s) 189, 259
CviJI RGCY 6 cut(s) 5, 28, 44, 75, 193, 230
CviKI_1 RGCY 6 cut(s) 5, 28, 44, 75, 193, 230
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 1 cut(s) 231
DraI TTTAAA 1 cut(s) 48
Eam1104I CTCTTC 2 cut(s) 56, 222
EarI CTCTTC 2 cut(s) 56, 222
Eco57I CTGAAG 1 cut(s) 80
FaeI CATG 2 cut(s) 192, 262
FaiI YATR 5 cut(s) 150, 174, 190, 260, 316
FatI CATG 2 cut(s) 188, 258
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 1 cut(s) 186
Fsp4HI GCNGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 42
GsaI CCCAGC 1 cut(s) 197
HapII CCGG 1 cut(s) 116
Hin1II CATG 2 cut(s) 192, 262
HindIII AAGCTT 1 cut(s) 73
HpaII CCGG 1 cut(s) 116
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 2 cut(s) 116, 203
Hpy8I GTNNAC 1 cut(s) 94
HpyCH4V TGCA 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 2 cut(s) 192, 262
Kpn2I TCCGGA 1 cut(s) 115
LpnPI CCDG 3 cut(s) 129, 179, 216
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 2 cut(s) 56, 208
MboII GAAGA 5 cut(s) 73, 94, 104, 209, 293
MluCI AATT 2 cut(s) 54, 183
MnlI CCTC 3 cut(s) 42, 226, 229
MroI TCCGGA 1 cut(s) 115
MseI TTAA 3 cut(s) 47, 249, 266
MspI CCGG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 133
NlaIII CATG 2 cut(s) 192, 262
PflMI CCANNNNNTGG 1 cut(s) 259
PkrI GCNGC 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 193
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SaqAI TTAA 3 cut(s) 47, 249, 266
SatI GCNGC 1 cut(s) 42
SetI ASST 5 cut(s) 30, 34, 46, 77, 232
SfaNI GCATC 2 cut(s) 56, 208
SgeI CNNG 9 cut(s) 37, 84, 128, 201, 206, 215, 266, 271, 288
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
Sse9I AATT 2 cut(s) 54, 183
TasI AATT 2 cut(s) 54, 183
TatI WGTACW 1 cut(s) 93
Tru1I TTAA 3 cut(s) 47, 249, 266
Tru9I TTAA 3 cut(s) 47, 249, 266
TscAI CASTG 1 cut(s) 150
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 117
TspRI CASTG 1 cut(s) 150
Van91I CCANNNNNTGG 1 cut(s) 259
XapI RAATTY 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.