AT2G16790

Belongs to the gluconokinase GntK GntV family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
7283928 .. 7285345
1418 bp
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UTR
Exon/CDS
Intron
AT2G16790.3

Sequence Viewer

Length: 570 bp
ATGTCGGCTAAAAATGACGTGACAGGTAAAGTCATTGCGATTATGGGCGTAAGTGGCGCAGGGAAATCTACCATAGGTAAAATGTTGGGGAAAGCTCTATCTTGCGATTTTCTTGATGCTGATGATTTTCATTCTTTATCAAACAGAGATAAGATGCGTCAAGGCATTGCTCTTTCAGATGAAGACCGAATGCCATGGCTTGAAAAAATACAAGAGAGTTTGCGAAAACGTTTACTCGATGGAGAAACCGTTGTTCTCGCATGTTCTTCTTTGAGAAAACAGTATAGAGAAATCTTGAGAGGTTCTGATCCTGATTACAAACCGGGAAGCTATACGAGTTGCAAGGTTACGTTTGTTTTATTGGAAGGTAATGCAGAGGTGATTGCTGCTCGGTTACAGAAGAGAGCTTCCGAGGAAGAACATTTCATGCCTCTTACTCTTCTTCAGTCTCAGTTTGATCTGCTTCAAGCTGATGAATGTGAAAAGATATTCAAAATCAGTGTGGTTCTAAGCCCTGAAGTTATAGTCAATACAATTCTTGAAATGGTAGCAAATTCTTTGAACCCTTGA

Protein Analysis

189

Amino Acids

20.97

Weight (kDa)

5.52

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_33 PF13671 16 - 148 7.3e-09 AAA domain
AAA_18 PF13238 17 - 144 9.6e-06 AAA domain
SKI PF01202 24 - 142 7.8e-11 Shikimate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010412)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 229
AclWI GGATC 1 cut(s) 302
AcsI RAATTY 1 cut(s) 553
AcuI CTGAAG 2 cut(s) 428, 537
AgsI TTSAA 5 cut(s) 203, 467, 493, 542, 562
AjiI CACGTC 1 cut(s) 19
AluBI AGCT 4 cut(s) 95, 330, 407, 470
AluI AGCT 4 cut(s) 95, 330, 407, 470
Alw26I GTCTC 1 cut(s) 453
AlwI GGATC 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 1 cut(s) 553
AspLEI GCGC 1 cut(s) 59
AsuC2I CCSGG 1 cut(s) 324
AsuHPI GGTGA 1 cut(s) 391
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 373
BccI CCATC 1 cut(s) 233
BcnI CCSGG 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 453
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
Bme1390I CCNGG 1 cut(s) 324
BmgBI CACGTC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 324
BmsI GCATC 2 cut(s) 106, 144
BpiI GAAGAC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 316
BpuMI CCSGG 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 194, 411
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bse3DI GCAATG 2 cut(s) 33, 165
BseDI CCNNGG 2 cut(s) 194, 411
BseMI GCAATG 2 cut(s) 33, 165
BseMII CTCAG 1 cut(s) 464
BseXI GCAGC 1 cut(s) 373
BsiSI CCGG 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 453
BsmI GAATGC 1 cut(s) 195
Bsp143I GATC 2 cut(s) 307, 457
Bsp19I CCATGG 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 463
BspPI GGATC 1 cut(s) 302
BsrDI GCAATG 2 cut(s) 33, 165
BssECI CCNNGG 2 cut(s) 194, 411
BssMI GATC 2 cut(s) 307, 457
BssT1I CCWWGG 1 cut(s) 194
Bst4CI ACNGT 2 cut(s) 250, 282
Bst6I CTCTTC 2 cut(s) 395, 444
BstDEI CTNAG 2 cut(s) 450, 509
BstDSI CCRYGG 1 cut(s) 194
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 2 cut(s) 310, 460
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 2 cut(s) 307, 457
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNSI RCATGY 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 373
BstV2I GAAGAC 1 cut(s) 189
BtgI CCRYGG 1 cut(s) 194
BtrI CACGTC 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 505
CfoI GCGC 1 cut(s) 59
CseI GACGC 1 cut(s) 146
CviAII CATG 3 cut(s) 195, 261, 427
CviJI RGCY 7 cut(s) 8, 95, 199, 330, 407, 470, 513
CviKI_1 RGCY 7 cut(s) 8, 95, 199, 330, 407, 470, 513
DdeI CTNAG 2 cut(s) 450, 509
DpnI GATC 2 cut(s) 309, 459
DpnII GATC 2 cut(s) 307, 457
Eam1104I CTCTTC 2 cut(s) 395, 444
EarI CTCTTC 2 cut(s) 395, 444
Eco130I CCWWGG 1 cut(s) 194
Eco57I CTGAAG 2 cut(s) 428, 537
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 3 cut(s) 198, 264, 430
FaiI YATR 8 cut(s) 44, 74, 196, 262, 285, 333, 428, 524
FatI CATG 3 cut(s) 194, 260, 426
Fnu4HI GCNGC 1 cut(s) 387
Fsp4HI GCNGC 1 cut(s) 387
GlaI GCGC 1 cut(s) 58
GluI GCNGC 1 cut(s) 387
HapII CCGG 1 cut(s) 323
HgaI GACGC 1 cut(s) 146
HhaI GCGC 1 cut(s) 59
Hin1II CATG 3 cut(s) 198, 264, 430
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HpaII CCGG 1 cut(s) 323
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 3 cut(s) 178, 307, 412
Hpy188III TCNNGA 4 cut(s) 113, 295, 311, 539
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 359
HpyCH4III ACNGT 2 cut(s) 250, 282
HpyCH4IV ACGT 3 cut(s) 18, 229, 350
HpyCH4V TGCA 2 cut(s) 342, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpyF3I CTNAG 2 cut(s) 450, 509
HpySE526I ACGT 3 cut(s) 18, 229, 350
Hsp92II CATG 3 cut(s) 198, 264, 430
HspAI GCGC 1 cut(s) 57
Kzo9I GATC 2 cut(s) 307, 457
LpnPI CCDG 5 cut(s) 9, 45, 324, 336, 528
Lsp1109I GCAGC 1 cut(s) 373
LweI GCATC 2 cut(s) 106, 144
MaeII ACGT 3 cut(s) 18, 229, 350
MaeIII GTNAC 3 cut(s) 19, 346, 393
MalI GATC 2 cut(s) 309, 459
MboI GATC 2 cut(s) 307, 457
MboII GAAGA 6 cut(s) 194, 258, 412, 428, 431, 434
MluCI AATT 2 cut(s) 534, 553
MnlI CCTC 4 cut(s) 293, 370, 406, 441
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 324
Mva1269I GAATGC 1 cut(s) 195
MwoI GCNNNNNNNGC 1 cut(s) 54
NciI CCSGG 1 cut(s) 324
NcoI CCATGG 1 cut(s) 194
NdeII GATC 2 cut(s) 307, 457
NlaIII CATG 3 cut(s) 198, 264, 430
NmuCI GTSAC 1 cut(s) 19
NspI RCATGY 1 cut(s) 264
PctI GAATGC 1 cut(s) 195
PkrI GCNGC 1 cut(s) 388
Psp1406I AACGTT 1 cut(s) 229
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 2 cut(s) 307, 457
ScrFI CCNGG 1 cut(s) 324
SfaNI GCATC 2 cut(s) 106, 144
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
Sse9I AATT 2 cut(s) 534, 553
StyD4I CCNGG 1 cut(s) 322
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 2 cut(s) 250, 282
TaiI ACGT 3 cut(s) 21, 232, 353
TaqI TCGA 1 cut(s) 237
TaqII GACCGA 1 cut(s) 201
TasI AATT 2 cut(s) 534, 553
TscAI CASTG 1 cut(s) 505
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 4 cut(s) 119, 195, 415, 489
TspRI CASTG 1 cut(s) 505
XapI RAATTY 1 cut(s) 553
XceI RCATGY 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.