Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0010412

Physical Location & Seq

Genomic Coordinates Reverse (-)

32146709 .. 32147869

Gene Structure 1161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1233600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCTGCAGCTCTTGGAGGAGGGATAGCTGTTGTGATCATGGGAGTCAGTGGTGCTGGCAAATCCACAATAGGCGAGATGCTGGCGAGAGAGACAAATTCTAGCTTTATAGATGCAGATGATTTCCACCCTCAATCAAACAAAGAAAAGATGCGTAAAGGGATCCCTCTCACCGAAGAAGACCGGATGCCTTGGCTTGAAAAACTTCGAAATGGTGTAAGAGACAAGTTGCTCGGTGGAGGAACTGTGATTCTTGGGTGTTCGGCTCTGCAGAAGCGATACAGAGAAATTTTAAGATCTGCCGACCCTAATTATTGTTGGTATATGGTCCAGCCCATGATCAATGTTCTAGATTATTCTAGTAAGCAAGAGAGATGGCTGGAGCATGCTAGACAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0006082 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016052 GO:0016054 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019520 GO:0019521 GO:0019523 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0046176 GO:0046183 GO:0046316 GO:0046395 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

AAA_33 SKI

Protein Analysis

134

Amino Acids

14.92

Weight (kDa)

8.6

Isoelectric Point (pI)

53.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SKI	PF01202	18 - 99	8.2e-08	Shikimate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16790 AT2G16790 AT2G16790 AT2G16790 AT2G16790
fragaria_vesca	FvH4_7g33580 FvH4_7g33580 FvH4_7g33591
malus_domestica	MD01G1233600.v1.1 MD07G1305700.v1.1
prunus_persica	Prupe.2G323800_v2.0.a1
pyrus_communis	pycom07g27900
rosa_chinensis	RchiOBHm_Chr1g0383841
rosa_laevigata	RLG00000026092
rosa_multiflora	Rmu_ssc0000132.1_g000001
rosa_rugosa	Rorug01G0442500
rosa_samantha	Rh1AG468400 Rh1BG426100 Rh1CG438800 Rh1DG458900
rosa_wichuraiana	Rw1G040400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	157, 170
AcsI	RAATTY	2 cut(s)	97, 288
AgsI	TTSAA	1 cut(s)	200
AluBI	AGCT	3 cut(s)	11, 29, 105
AluI	AGCT	3 cut(s)	11, 29, 105
Alw26I	GTCTC	2 cut(s)	86, 216
AlwI	GGATC	2 cut(s)	157, 170
ApeKI	GCWGC	2 cut(s)	5, 8
ApoI	RAATTY	2 cut(s)	97, 288
Asp700I	GAANNNNTTC	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	328
AsuHPI	GGTGA	1 cut(s)	163
AsuII	TTCGAA	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	328
BamHI	GGATCC	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	1 cut(s)	369
BclI	TGATCA	2 cut(s)	36, 339
BcoDI	GTCTC	2 cut(s)	86, 216
BfaI	CTAG	5 cut(s)	102, 350, 360, 390, 400
BfmI	CTRYAG	2 cut(s)	6, 269
BglII	AGATCT	1 cut(s)	296
BisI	GCNGC	2 cut(s)	6, 9
BlsI	GCNGC	2 cut(s)	7, 10
Bme18I	GGWCC	1 cut(s)	328
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	164
BmsI	GCATC	4 cut(s)	69, 103, 141, 177
BpiI	GAAGAC	1 cut(s)	186
BpmI	CTGGAG	1 cut(s)	401
Bpu14I	TTCGAA	1 cut(s)	208
BsaJI	CCNNGG	1 cut(s)	191
BsaWI	WCCGGW	1 cut(s)	183
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
BseDI	CCNNGG	1 cut(s)	191
BseGI	GGATG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	184
BsmAI	GTCTC	2 cut(s)	86, 216
Bsp119I	TTCGAA	1 cut(s)	208
Bsp143I	GATC	4 cut(s)	36, 162, 296, 339
BspLI	GGNNCC	1 cut(s)	164
BspMAI	CTGCAG	2 cut(s)	10, 273
BspPI	GGATC	2 cut(s)	157, 170
BspT104I	TTCGAA	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	4 cut(s)	36, 162, 296, 339
BssT1I	CCWWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	247
BstBI	TTCGAA	1 cut(s)	208
BstC8I	GCNNGC	3 cut(s)	58, 84, 387
BstF5I	GGATG	1 cut(s)	192
BstKTI	GATC	4 cut(s)	39, 165, 299, 342
BstMAI	GTCTC	2 cut(s)	86, 216
BstMBI	GATC	4 cut(s)	36, 162, 296, 339
BstNSI	RCATGY	1 cut(s)	389
BstSFI	CTRYAG	2 cut(s)	6, 269
BstV1I	GCAGC	1 cut(s)	20
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	2 cut(s)	162, 296
BstYI	RGATCY	2 cut(s)	162, 296
BtsCI	GGATG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	3 cut(s)	58, 84, 387
Cfr13I	GGNCC	1 cut(s)	328
CviAII	CATG	3 cut(s)	40, 337, 386
CviJI	RGCY	8 cut(s)	5, 11, 29, 105, 196, 266, 334, 379
CviKI_1	RGCY	8 cut(s)	5, 11, 29, 105, 196, 266, 334, 379
DpnI	GATC	4 cut(s)	38, 164, 298, 341
DpnII	GATC	4 cut(s)	36, 162, 296, 339
Eco130I	CCWWGG	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	191
ErhI	CCWWGG	1 cut(s)	191
FaeI	CATG	3 cut(s)	43, 340, 389
FaiI	YATR	6 cut(s)	41, 110, 324, 326, 338, 387
FatI	CATG	3 cut(s)	39, 336, 385
FbaI	TGATCA	2 cut(s)	36, 339
Fnu4HI	GCNGC	2 cut(s)	6, 9
FokI	GGATG	1 cut(s)	199
Fsp4HI	GCNGC	2 cut(s)	6, 9
FspBI	CTAG	5 cut(s)	102, 350, 360, 390, 400
GluI	GCNGC	2 cut(s)	6, 9
GsuI	CTGGAG	1 cut(s)	401
HapII	CCGG	1 cut(s)	184
Hin1II	CATG	3 cut(s)	43, 340, 389
HinfI	GANTC	2 cut(s)	45, 250
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	350
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	3 cut(s)	8, 116, 271
Hsp92II	CATG	3 cut(s)	43, 340, 389
Ksp22I	TGATCA	2 cut(s)	36, 339
Kzo9I	GATC	4 cut(s)	36, 162, 296, 339
LmnI	GCTCC	1 cut(s)	382
LpnPI	CCDG	5 cut(s)	42, 68, 197, 344, 365
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	4 cut(s)	69, 103, 141, 177
MaeI	CTAG	5 cut(s)	102, 350, 360, 390, 400
MalI	GATC	4 cut(s)	38, 164, 298, 341
MboI	GATC	4 cut(s)	36, 162, 296, 339
MboII	GAAGA	2 cut(s)	188, 191
MflI	RGATCY	2 cut(s)	162, 296
MluCI	AATT	4 cut(s)	97, 288, 310, 395
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	5 cut(s)	11, 14, 141, 177, 233
MroXI	GAANNNNTTC	1 cut(s)	204
MseI	TTAA	1 cut(s)	293
MspI	CCGG	1 cut(s)	184
NdeII	GATC	4 cut(s)	36, 162, 296, 339
NlaIII	CATG	3 cut(s)	43, 340, 389
NlaIV	GGNNCC	1 cut(s)	164
NspI	RCATGY	1 cut(s)	389
NspV	TTCGAA	1 cut(s)	208
PaeI	GCATGC	1 cut(s)	389
PdmI	GAANNNNTTC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	2 cut(s)	7, 10
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	1 cut(s)	328
PstI	CTGCAG	2 cut(s)	10, 273
PsuI	RGATCY	2 cut(s)	162, 296
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	2 cut(s)	6, 9
Sau3AI	GATC	4 cut(s)	36, 162, 296, 339
Sau96I	GGNCC	1 cut(s)	328
SchI	GAGTC	1 cut(s)	54
SetI	ASST	3 cut(s)	13, 31, 107
SfaNI	GCATC	4 cut(s)	69, 103, 141, 177
SfcI	CTRYAG	2 cut(s)	6, 269
SfuI	TTCGAA	1 cut(s)	208
SinI	GGWCC	1 cut(s)	328
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	4 cut(s)	97, 288, 310, 395
SspMI	CTAG	5 cut(s)	102, 350, 360, 390, 400
StyI	CCWWGG	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	247
TaqI	TCGA	1 cut(s)	208
TasI	AATT	4 cut(s)	97, 288, 310, 395
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	2 cut(s)	5, 8
TspRI	CASTG	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	328
XapI	RAATTY	2 cut(s)	97, 288
XbaI	TCTAGA	1 cut(s)	349
XceI	RCATGY	1 cut(s)	389
XmnI	GAANNNNTTC	1 cut(s)	204
XspI	CTAG	5 cut(s)	102, 350, 360, 390, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.