FvH4_7g33591

Belongs to the gluconokinase GntK GntV family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
23861493 .. 23862867
1375 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g33591.t1

Sequence Viewer

Length: 576 bp
ATGGCTTCAACTCTCGAAGGGATGGCAATTGTGATTATGGGTGTCAGTGGTGCTGGGAAATCCACTATAGGTGAGATGCTGGCCAAAGAGACAAACTGTAGCTTTATTGATGCTGATGACTACCATCCCCAATCAAACAAAGAAAAGATGAGAAAAGGGATCCCTCTTTCAGAGGAAGATCGAATTCCTTGGCTTGAAACACTTCGGAATGCCTTAAGAGAGAACTTAGTCAGTGGAAGCACTTTAATTCTTGGTTGTTCAGCCCTGCAGAGGCGATACCGAGACATATTAAGATCTGCAGACCCTAACTATGAACCCGGAAGTGATGCCAATTTGGTGAAGTTCATCTTGTTGGATGCCAAGGCACATATGCTTGCTGCTCGATTAGAGAAGAGAGTAGCAGAAGGGAAGCATTTCATGCCACCTGAACTTTTGCAGTCTCAGTTAGACTTACTTCAGATTGATGATTCGGAAGGGATACTTAAAGTCGATGCTAACATTACTCCTCAAAACATAGTAAACACCATCCGAAGATTGTTTTTTGTTTCGAAAGTTGTTCAAGAGTGTAACCATTAG

Protein Analysis

192

Amino Acids

21.29

Weight (kDa)

5.84

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_18 PF13238 10 - 135 3e-09 AAA domain
AAA_33 PF13671 10 - 148 1.1e-08 AAA domain
SKI PF01202 17 - 132 1.4e-10 Shikimate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0010412)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 154, 167
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 1 cut(s) 183
AcuI CTGAAG 1 cut(s) 440
AfiI CCNNNNNNNGG 1 cut(s) 270
AflII CTTAAG 1 cut(s) 214
AgsI TTSAA 3 cut(s) 9, 197, 560
AluBI AGCT 1 cut(s) 102
AluI AGCT 1 cut(s) 102
Alw26I GTCTC 3 cut(s) 83, 276, 444
AlwI GGATC 2 cut(s) 154, 167
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 377
ApoI RAATTY 1 cut(s) 183
Asp700I GAANNNNTTC 2 cut(s) 201, 413
AsuC2I CCSGG 1 cut(s) 318
AsuHPI GGTGA 2 cut(s) 83, 349
AsuII TTCGAA 1 cut(s) 548
BalI TGGCCA 1 cut(s) 83
BamHI GGATCC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 364
BccI CCATC 3 cut(s) 16, 132, 533
BciVI GTATCC 1 cut(s) 471
BcnI CCSGG 1 cut(s) 318
BcoDI GTCTC 3 cut(s) 83, 276, 444
BfmI CTRYAG 4 cut(s) 66, 97, 266, 297
BfrI CTTAAG 1 cut(s) 214
BfuI GTATCC 1 cut(s) 471
BglII AGATCT 1 cut(s) 293
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 318
BmiI GGNNCC 1 cut(s) 161
BmrFI CCNGG 1 cut(s) 318
BmsI GCATC 5 cut(s) 66, 100, 316, 346, 481
Bpu14I TTCGAA 1 cut(s) 548
BpuMI CCSGG 1 cut(s) 318
BsaJI CCNNGG 2 cut(s) 188, 360
Bsc4I CCNNNNNNNGG 1 cut(s) 270
BseDI CCNNGG 2 cut(s) 188, 360
BseGI GGATG 4 cut(s) 27, 124, 361, 525
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMII CTCAG 1 cut(s) 455
BseRI GAGGAG 1 cut(s) 495
BseXI GCAGC 1 cut(s) 364
BseYI CCCAGC 1 cut(s) 53
BshFI GGCC 1 cut(s) 83
BsiSI CCGG 1 cut(s) 318
BslI CCNNNNNNNGG 1 cut(s) 270
BsmAI GTCTC 3 cut(s) 83, 276, 444
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 1 cut(s) 83
Bsp119I TTCGAA 1 cut(s) 548
Bsp143I GATC 3 cut(s) 159, 178, 293
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 161
BspMAI CTGCAG 2 cut(s) 270, 301
BspPI GGATC 2 cut(s) 154, 167
BspT104I TTCGAA 1 cut(s) 548
BspTI CTTAAG 1 cut(s) 214
BssECI CCNNGG 2 cut(s) 188, 360
BssMI GATC 3 cut(s) 159, 178, 293
BssT1I CCWWGG 2 cut(s) 188, 360
Bst4CI ACNGT 1 cut(s) 98
Bst6I CTCTTC 1 cut(s) 386
BstAFI CTTAAG 1 cut(s) 214
BstAPI GCANNNNNTGC 1 cut(s) 418
BstBI TTCGAA 1 cut(s) 548
BstC8I GCNNGC 2 cut(s) 81, 375
BstDEI CTNAG 2 cut(s) 226, 441
BstF5I GGATG 4 cut(s) 27, 124, 361, 525
BstKTI GATC 3 cut(s) 162, 181, 296
BstMAI GTCTC 3 cut(s) 83, 276, 444
BstMBI GATC 3 cut(s) 159, 178, 293
BstMWI GCNNNNNNNGC 1 cut(s) 418
BstSCI CCNGG 1 cut(s) 316
BstSFI CTRYAG 4 cut(s) 66, 97, 266, 297
BstV1I GCAGC 1 cut(s) 364
BstX2I RGATCY 2 cut(s) 159, 293
BstYI RGATCY 2 cut(s) 159, 293
BsuI GTATCC 1 cut(s) 471
BsuRI GGCC 1 cut(s) 83
BtsCI GGATG 4 cut(s) 27, 124, 361, 525
BtsIMutI CAGTG 2 cut(s) 52, 238
Cac8I GCNNGC 2 cut(s) 81, 375
CviAII CATG 1 cut(s) 418
CviJI RGCY 5 cut(s) 5, 83, 102, 193, 263
CviKI_1 RGCY 5 cut(s) 5, 83, 102, 193, 263
DdeI CTNAG 2 cut(s) 226, 441
DpnI GATC 3 cut(s) 161, 180, 295
DpnII GATC 3 cut(s) 159, 178, 293
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 386
EarI CTCTTC 1 cut(s) 386
Eco130I CCWWGG 2 cut(s) 188, 360
Eco57I CTGAAG 1 cut(s) 440
EcoRI GAATTC 1 cut(s) 183
EcoT14I CCWWGG 2 cut(s) 188, 360
ErhI CCWWGG 2 cut(s) 188, 360
FaeI CATG 1 cut(s) 421
FaiI YATR 8 cut(s) 38, 68, 287, 312, 369, 371, 419, 515
FalI AAGNNNNNCTT 4 cut(s) 332, 364, 465, 497
FatI CATG 1 cut(s) 417
FauNDI CATATG 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 4 cut(s) 34, 111, 368, 512
Fsp4HI GCNGC 1 cut(s) 378
GluI GCNGC 1 cut(s) 378
GsaI CCCAGC 1 cut(s) 57
HaeIII GGCC 1 cut(s) 83
HapII CCGG 1 cut(s) 318
Hin1II CATG 1 cut(s) 421
HinfI GANTC 1 cut(s) 467
HpaII CCGG 1 cut(s) 318
HphI GGTGA 2 cut(s) 83, 349
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 5 cut(s) 172, 207, 459, 472, 530
Hpy188III TCNNGA 2 cut(s) 14, 560
Hpy8I GTNNAC 1 cut(s) 520
HpyAV CCTTC 3 cut(s) 11, 398, 467
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4V TGCA 3 cut(s) 268, 299, 436
HpyF10VI GCNNNNNNNGC 1 cut(s) 418
HpyF3I CTNAG 2 cut(s) 226, 441
Hsp92II CATG 1 cut(s) 421
Kzo9I GATC 3 cut(s) 159, 178, 293
LpnPI CCDG 5 cut(s) 39, 65, 278, 331, 438
Lsp1109I GCAGC 1 cut(s) 364
LweI GCATC 5 cut(s) 66, 100, 316, 346, 481
MaeIII GTNAC 1 cut(s) 566
MalI GATC 3 cut(s) 161, 180, 295
MboI GATC 3 cut(s) 159, 178, 293
MboII GAAGA 3 cut(s) 188, 403, 543
MfeI CAATTG 1 cut(s) 27
MflI RGATCY 2 cut(s) 159, 293
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 4 cut(s) 27, 183, 246, 331
MluNI TGGCCA 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 333
MnlI CCTC 4 cut(s) 166, 174, 264, 516
Mox20I TGGCCA 1 cut(s) 83
MroXI GAANNNNTTC 2 cut(s) 201, 413
MscI TGGCCA 1 cut(s) 83
MseI TTAA 4 cut(s) 215, 245, 290, 483
Msp20I TGGCCA 1 cut(s) 83
MspCI CTTAAG 1 cut(s) 214
MspI CCGG 1 cut(s) 318
MspR9I CCNGG 1 cut(s) 318
MunI CAATTG 1 cut(s) 27
Mva1269I GAATGC 1 cut(s) 214
MwoI GCNNNNNNNGC 1 cut(s) 418
NciI CCSGG 1 cut(s) 318
NdeI CATATG 1 cut(s) 369
NdeII GATC 3 cut(s) 159, 178, 293
NlaIII CATG 1 cut(s) 421
NlaIV GGNNCC 1 cut(s) 161
NspV TTCGAA 1 cut(s) 548
PctI GAATGC 1 cut(s) 214
PdmI GAANNNNTTC 2 cut(s) 201, 413
PfeI GAWTC 1 cut(s) 467
PkrI GCNGC 1 cut(s) 379
PspFI CCCAGC 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 161
PstI CTGCAG 2 cut(s) 270, 301
PsuI RGATCY 2 cut(s) 159, 293
SaqAI TTAA 4 cut(s) 215, 245, 290, 483
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 3 cut(s) 159, 178, 293
ScrFI CCNGG 1 cut(s) 318
SetI ASST 3 cut(s) 73, 104, 427
SfaNI GCATC 5 cut(s) 66, 100, 316, 346, 481
SfcI CTRYAG 4 cut(s) 66, 97, 266, 297
SfuI TTCGAA 1 cut(s) 548
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
Sse9I AATT 4 cut(s) 27, 183, 246, 331
StyD4I CCNGG 1 cut(s) 316
StyI CCWWGG 2 cut(s) 188, 360
TaaI ACNGT 1 cut(s) 98
TaqI TCGA 5 cut(s) 15, 181, 382, 489, 548
TasI AATT 4 cut(s) 27, 183, 246, 331
TfiI GAWTC 1 cut(s) 467
Tru1I TTAA 4 cut(s) 215, 245, 290, 483
Tru9I TTAA 4 cut(s) 215, 245, 290, 483
TscAI CASTG 2 cut(s) 52, 238
TseI GCWGC 1 cut(s) 377
TspDTI ATGAA 3 cut(s) 327, 334, 406
TspRI CASTG 2 cut(s) 52, 238
Vha464I CTTAAG 1 cut(s) 214
XapI RAATTY 1 cut(s) 183
XmnI GAANNNNTTC 2 cut(s) 201, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.