Rh1AG468400

Belongs to the gluconokinase GntK GntV family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0010412
Physical Location & Seq
Reverse (-)
68188736 .. 68192457
3722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG468400.1

Sequence Viewer

Length: 642 bp
ATGTGTGCTACATTTTCTCTGTTAACATTCATTGTTTCATGTGACATTGTTCTTCGCAAAATTGTATATCTGATCTTTCAGTATCTATTGTTTCTGCTTATCATGCATTTGAATGTATCGTTTGACAGAACTATAGGTGAGATGCTGGCCAAAGAGACAAACTGTAGCTTTATTGATGCTGATGATTTCCACCCACAGTCAAACAAAGAAAAGATGAGTAAAGGGATCCCTCTTTCAGAGGAAGATCGAATTCCTTGGCTTGAAACACTTCGGAATGCCTTAAGAGAGAACTTGGTCAGTGGAAGCACTGTAATTCTTGGTTGTTCAGCTCTGCAGAAGCGGTACCGAGACATTTTAAGATCTGCAGACCCTAACTATGAACCTGGAAGTTATGCCAGTCTGGTGAAGTTCATCTTGTTAGACACCAAGGCACATGTGCTGGCTGCTCGATTAGAGAAGAGAGTAGCAGAAGGAAAGCATTTCATGCCACCTGAACTTTTGCAGTCTCAGTTAGACTTGCTTCAGATTGATGATTCTGAAGGGATACTTAAAGTTGATGCTAACCTAACTCCACAAGACATAGTAAACACTATCCAAAGATTGGTTTTTGGCTCAAAAGTCGTCCAAGAATGCAACCATTAG

Protein Analysis

213

Amino Acids

24.17

Weight (kDa)

5.75

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SKI PF01202 44 - 154 3.1e-06 Shikimate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16790 AT2G16790 AT2G16790 AT2G16790 AT2G16790
fragaria_vesca FvH4_7g33580 FvH4_7g33580 FvH4_7g33591
malus_domestica MD01G1233600.v1.1 MD07G1305700.v1.1
prunus_persica Prupe.2G323800_v2.0.a1
pyrus_communis pycom07g27900
rosa_chinensis RchiOBHm_Chr1g0383841
rosa_laevigata RLG00000026092
rosa_multiflora Rmu_ssc0000132.1_g000001
rosa_rugosa Rorug01G0442500
rosa_samantha Rh1AG468400 Rh1BG426100 Rh1CG438800 Rh1DG458900
rosa_wichuraiana Rw1G040400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 342
AccB1I GGYRCC 1 cut(s) 342
AccB7I CCANNNNNTGG 1 cut(s) 601
AciI CCGC 1 cut(s) 340
AclWI GGATC 2 cut(s) 220, 233
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 1 cut(s) 249
AcuI CTGAAG 2 cut(s) 506, 558
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 1 cut(s) 601
AflII CTTAAG 1 cut(s) 280
AflIII ACRYGT 1 cut(s) 433
AgsI TTSAA 2 cut(s) 112, 263
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 2 cut(s) 168, 329
AluI AGCT 2 cut(s) 168, 329
Alw26I GTCTC 3 cut(s) 149, 342, 510
AlwI GGATC 2 cut(s) 220, 233
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 443
ApoI RAATTY 1 cut(s) 249
Asp700I GAANNNNTTC 1 cut(s) 267
Asp718I GGTACC 1 cut(s) 342
AsuHPI GGTGA 2 cut(s) 149, 415
BalI TGGCCA 1 cut(s) 149
BamHI GGATCC 1 cut(s) 225
BanI GGYRCC 1 cut(s) 342
BbvI GCAGC 1 cut(s) 430
BciT130I CCWGG 1 cut(s) 384
BciVI GTATCC 1 cut(s) 537
BcoDI GTCTC 3 cut(s) 149, 342, 510
BfmI CTRYAG 4 cut(s) 132, 163, 332, 363
BfrI CTTAAG 1 cut(s) 280
BfuI GTATCC 1 cut(s) 537
BglII AGATCT 1 cut(s) 359
BisI GCNGC 1 cut(s) 444
BlsI GCNGC 1 cut(s) 445
Bme1390I CCNGG 1 cut(s) 384
BmiI GGNNCC 2 cut(s) 227, 344
BmrFI CCNGG 1 cut(s) 384
BmsI GCATC 3 cut(s) 132, 166, 547
BsaJI CCNNGG 2 cut(s) 254, 426
Bsc4I CCNNNNNNNGG 1 cut(s) 601
Bse1I ACTGG 1 cut(s) 396
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 2 cut(s) 254, 426
BseLI CCNNNNNNNGG 1 cut(s) 601
BseMII CTCAG 1 cut(s) 521
BseNI ACTGG 1 cut(s) 396
BseXI GCAGC 1 cut(s) 430
BshFI GGCC 1 cut(s) 149
BshNI GGYRCC 1 cut(s) 342
BslI CCNNNNNNNGG 1 cut(s) 601
BsmAI GTCTC 3 cut(s) 149, 342, 510
BsmI GAATGC 2 cut(s) 280, 635
BsnI GGCC 1 cut(s) 149
Bsp143I GATC 4 cut(s) 72, 225, 244, 359
BspACI CCGC 1 cut(s) 340
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 1 cut(s) 520
BspLI GGNNCC 2 cut(s) 227, 344
BspMAI CTGCAG 2 cut(s) 336, 367
BspPI GGATC 2 cut(s) 220, 233
BspT107I GGYRCC 1 cut(s) 342
BspTI CTTAAG 1 cut(s) 280
BsrI ACTGG 1 cut(s) 396
BssECI CCNNGG 2 cut(s) 254, 426
BssMI GATC 4 cut(s) 72, 225, 244, 359
BssT1I CCWWGG 2 cut(s) 254, 426
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 3 cut(s) 164, 198, 310
Bst6I CTCTTC 1 cut(s) 452
BstAFI CTTAAG 1 cut(s) 280
BstAPI GCANNNNNTGC 1 cut(s) 484
BstC8I GCNNGC 2 cut(s) 147, 441
BstDEI CTNAG 1 cut(s) 507
BstKTI GATC 4 cut(s) 75, 228, 247, 362
BstMAI GTCTC 3 cut(s) 149, 342, 510
BstMBI GATC 4 cut(s) 72, 225, 244, 359
BstMWI GCNNNNNNNGC 2 cut(s) 103, 484
BstNI CCWGG 1 cut(s) 384
BstNSI RCATGY 1 cut(s) 437
BstSCI CCNGG 1 cut(s) 382
BstSFI CTRYAG 4 cut(s) 132, 163, 332, 363
BstV1I GCAGC 1 cut(s) 430
BstX2I RGATCY 2 cut(s) 225, 359
BstYI RGATCY 2 cut(s) 225, 359
BsuI GTATCC 1 cut(s) 537
BsuRI GGCC 1 cut(s) 149
BtsIMutI CAGTG 2 cut(s) 304, 306
Cac8I GCNNGC 2 cut(s) 147, 441
Csp6I GTAC 1 cut(s) 343
CviAII CATG 4 cut(s) 39, 103, 434, 484
CviJI RGCY 6 cut(s) 149, 168, 259, 329, 443, 612
CviKI_1 RGCY 6 cut(s) 149, 168, 259, 329, 443, 612
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 1 cut(s) 507
DpnI GATC 4 cut(s) 74, 227, 246, 361
DpnII GATC 4 cut(s) 72, 225, 244, 359
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
Eco130I CCWWGG 2 cut(s) 254, 426
Eco57I CTGAAG 2 cut(s) 506, 558
EcoRI GAATTC 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 382
EcoT14I CCWWGG 2 cut(s) 254, 426
EcoT22I ATGCAT 1 cut(s) 108
ErhI CCWWGG 2 cut(s) 254, 426
FaeI CATG 4 cut(s) 42, 106, 437, 487
FaiI YATR 9 cut(s) 40, 67, 104, 134, 378, 393, 435, 485, 581
FalI AAGNNNNNCTT 4 cut(s) 398, 430, 531, 563
FatI CATG 4 cut(s) 38, 102, 433, 483
Fnu4HI GCNGC 1 cut(s) 444
Fsp4HI GCNGC 1 cut(s) 444
GluI GCNGC 1 cut(s) 444
HaeIII GGCC 1 cut(s) 149
Hin1II CATG 4 cut(s) 42, 106, 437, 487
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HinfI GANTC 1 cut(s) 533
HpaI GTTAAC 1 cut(s) 24
HphI GGTGA 2 cut(s) 149, 415
Hpy166II GTNNAC 2 cut(s) 24, 586
Hpy188I TCNGA 5 cut(s) 72, 238, 273, 525, 538
Hpy8I GTNNAC 2 cut(s) 24, 586
HpyAV CCTTC 2 cut(s) 464, 533
HpyCH4III ACNGT 3 cut(s) 164, 198, 310
HpyCH4V TGCA 5 cut(s) 106, 334, 365, 502, 633
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 484
HpyF3I CTNAG 1 cut(s) 507
Hsp92II CATG 4 cut(s) 42, 106, 437, 487
KpnI GGTACC 1 cut(s) 346
KspAI GTTAAC 1 cut(s) 24
Kzo9I GATC 4 cut(s) 72, 225, 244, 359
LpnPI CCDG 7 cut(s) 131, 369, 386, 396, 409, 425, 504
Lsp1109I GCAGC 1 cut(s) 430
LweI GCATC 3 cut(s) 132, 166, 547
MaeIII GTNAC 1 cut(s) 41
MalI GATC 4 cut(s) 74, 227, 246, 361
MboI GATC 4 cut(s) 72, 225, 244, 359
MboII GAAGA 3 cut(s) 44, 254, 469
MflI RGATCY 2 cut(s) 225, 359
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 3 cut(s) 60, 249, 312
MluNI TGGCCA 1 cut(s) 149
MnlI CCTC 2 cut(s) 232, 240
Mox20I TGGCCA 1 cut(s) 149
Mph1103I ATGCAT 1 cut(s) 108
MroXI GAANNNNTTC 1 cut(s) 267
MscI TGGCCA 1 cut(s) 149
MseI TTAA 4 cut(s) 23, 281, 356, 549
MslI CAYNNNNRTG 1 cut(s) 111
Msp20I TGGCCA 1 cut(s) 149
MspCI CTTAAG 1 cut(s) 280
MspR9I CCNGG 1 cut(s) 384
Mva1269I GAATGC 2 cut(s) 280, 635
MvaI CCWGG 1 cut(s) 384
MwoI GCNNNNNNNGC 2 cut(s) 103, 484
NdeII GATC 4 cut(s) 72, 225, 244, 359
NlaIII CATG 4 cut(s) 42, 106, 437, 487
NlaIV GGNNCC 2 cut(s) 227, 344
NmuCI GTSAC 1 cut(s) 41
NsiI ATGCAT 1 cut(s) 108
NspI RCATGY 1 cut(s) 437
PciI ACATGT 1 cut(s) 433
PctI GAATGC 2 cut(s) 280, 635
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 1 cut(s) 533
PflMI CCANNNNNTGG 1 cut(s) 601
PkrI GCNGC 1 cut(s) 445
PscI ACATGT 1 cut(s) 433
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PspN4I GGNNCC 2 cut(s) 227, 344
PstI CTGCAG 2 cut(s) 336, 367
PsuI RGATCY 2 cut(s) 225, 359
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
RseI CAYNNNNRTG 1 cut(s) 111
SaqAI TTAA 4 cut(s) 23, 281, 356, 549
SatI GCNGC 1 cut(s) 444
Sau3AI GATC 4 cut(s) 72, 225, 244, 359
ScrFI CCNGG 1 cut(s) 384
SetI ASST 6 cut(s) 139, 170, 331, 385, 493, 567
SfaNI GCATC 3 cut(s) 132, 166, 547
SfcI CTRYAG 4 cut(s) 132, 163, 332, 363
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
Sse9I AATT 3 cut(s) 60, 249, 312
SsiI CCGC 1 cut(s) 340
StyD4I CCNGG 1 cut(s) 382
StyI CCWWGG 2 cut(s) 254, 426
TaaI ACNGT 3 cut(s) 164, 198, 310
TaqI TCGA 2 cut(s) 247, 448
TasI AATT 3 cut(s) 60, 249, 312
TfiI GAWTC 1 cut(s) 533
Tru1I TTAA 4 cut(s) 23, 281, 356, 549
Tru9I TTAA 4 cut(s) 23, 281, 356, 549
TscAI CASTG 2 cut(s) 304, 313
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 1 cut(s) 443
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 5 cut(s) 19, 27, 393, 400, 472
TspRI CASTG 2 cut(s) 304, 313
Van91I CCANNNNNTGG 1 cut(s) 601
Vha464I CTTAAG 1 cut(s) 280
XapI RAATTY 1 cut(s) 249
XceI RCATGY 1 cut(s) 437
XmnI GAANNNNTTC 1 cut(s) 267
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.