Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0010412

Physical Location & Seq

Genomic Coordinates Reverse (-)

69281869 .. 69283022

Gene Structure 1154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG438800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTCTCTGAAATTGATTGATTCTGAATTGGTTTTAACAGGGATGGTGATTGTGATTATGGGTGTCAGTGGTGCTGGGAAATCAACTATAGGTGAGATGCTGGCCAAAGAGACAAACTGTAGCTTTATTGATGCTGATGATTTCCACCCACAAGCAAACAAAGAAAAGATGAGTAAAGGGATCCCTCTTTCAGAGGAAGATCGAATTCCTTGGCTTGAAACACTTCAGAATGCCTTAAGAGAGAACTTGGTCAGTGGAAGCACTGTAATTCTTGGTTGTTCAGCTCTGCAGAAGCGGTACCGAGACATTTTAAGATCTGCAGACCCTAACTATGAACCTGGAAGTTATGCCAGTCTGGTGAAGTTCATCTTGTTAGACACCAAGGCACATGTGCTGGCTGCTCGATTAGAGAAGAGAGTAGCAGAAGGAAAGCATTTCATGCCACCTGAACTTTTGCAGTCTCAGTTAGACTTGCTTCAGATTGATGATTCTGAAGGGATACTTAAAGTTGATGCTAACCTAACTCCACAAGACATAGTAAACACACTATCCAAAGATTGTTTTTTGGCTCAAAAGTCGTTCAAGAATGCAACCATTAGGCCAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0006082 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016052 GO:0016054 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019520 GO:0019521 GO:0019523 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0046176 GO:0046183 GO:0046316 GO:0046395 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

AAA_33 SKI

Protein Analysis

202

Amino Acids

22.27

Weight (kDa)

5.45

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	16 - 155	1.6e-10	AAA domain
AAA_18	PF13238	17 - 142	3.7e-09	AAA domain
SKI	PF01202	24 - 139	3.6e-11	Shikimate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16790 AT2G16790 AT2G16790 AT2G16790 AT2G16790
fragaria_vesca	FvH4_7g33580 FvH4_7g33580 FvH4_7g33591
malus_domestica	MD01G1233600.v1.1 MD07G1305700.v1.1
prunus_persica	Prupe.2G323800_v2.0.a1
pyrus_communis	pycom07g27900
rosa_chinensis	RchiOBHm_Chr1g0383841
rosa_laevigata	RLG00000026092
rosa_multiflora	Rmu_ssc0000132.1_g000001
rosa_rugosa	Rorug01G0442500
rosa_samantha	Rh1AG468400 Rh1BG426100 Rh1CG438800 Rh1DG458900
rosa_wichuraiana	Rw1G040400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	297
AccB1I	GGYRCC	1 cut(s)	297
AciI	CCGC	1 cut(s)	295
AclWI	GGATC	2 cut(s)	175, 188
AcoI	YGGCCR	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	204
AcuI	CTGAAG	3 cut(s)	209, 461, 513
AfaI	GTAC	1 cut(s)	299
AflII	CTTAAG	1 cut(s)	235
AflIII	ACRYGT	1 cut(s)	388
AgsI	TTSAA	2 cut(s)	218, 583
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	2 cut(s)	123, 284
AluI	AGCT	2 cut(s)	123, 284
Alw26I	GTCTC	4 cut(s)	9, 104, 297, 465
AlwI	GGATC	2 cut(s)	175, 188
AoxI	GGCC	2 cut(s)	102, 599
ApeKI	GCWGC	1 cut(s)	398
ApoI	RAATTY	1 cut(s)	204
Asp700I	GAANNNNTTC	1 cut(s)	222
Asp718I	GGTACC	1 cut(s)	297
AsuHPI	GGTGA	3 cut(s)	58, 104, 370
BalI	TGGCCA	1 cut(s)	104
BamHI	GGATCC	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	339
BciVI	GTATCC	1 cut(s)	492
BcoDI	GTCTC	4 cut(s)	9, 104, 297, 465
BfmI	CTRYAG	4 cut(s)	87, 118, 287, 318
BfrI	CTTAAG	1 cut(s)	235
BfuI	GTATCC	1 cut(s)	492
BglII	AGATCT	1 cut(s)	314
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	339
BmiI	GGNNCC	2 cut(s)	182, 299
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	3 cut(s)	87, 121, 502
BsaJI	CCNNGG	2 cut(s)	209, 381
Bse1I	ACTGG	2 cut(s)	351, 602
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	2 cut(s)	209, 381
BseGI	GGATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	476
BseNI	ACTGG	2 cut(s)	351, 602
BseXI	GCAGC	1 cut(s)	385
BseYI	CCCAGC	1 cut(s)	74
BshFI	GGCC	2 cut(s)	104, 601
BshNI	GGYRCC	1 cut(s)	297
BsmAI	GTCTC	4 cut(s)	9, 104, 297, 465
BsmI	GAATGC	2 cut(s)	235, 592
BsnI	GGCC	2 cut(s)	104, 601
Bsp143I	GATC	3 cut(s)	180, 199, 314
BspACI	CCGC	1 cut(s)	295
BspANI	GGCC	2 cut(s)	104, 601
BspCNI	CTCAG	1 cut(s)	475
BspLI	GGNNCC	2 cut(s)	182, 299
BspMAI	CTGCAG	2 cut(s)	291, 322
BspPI	GGATC	2 cut(s)	175, 188
BspT107I	GGYRCC	1 cut(s)	297
BspTI	CTTAAG	1 cut(s)	235
BsrI	ACTGG	2 cut(s)	351, 602
BssECI	CCNNGG	2 cut(s)	209, 381
BssMI	GATC	3 cut(s)	180, 199, 314
BssT1I	CCWWGG	2 cut(s)	209, 381
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	2 cut(s)	119, 265
Bst6I	CTCTTC	1 cut(s)	407
BstAFI	CTTAAG	1 cut(s)	235
BstAPI	GCANNNNNTGC	1 cut(s)	439
BstC8I	GCNNGC	2 cut(s)	102, 396
BstDEI	CTNAG	1 cut(s)	462
BstF5I	GGATG	1 cut(s)	48
BstKTI	GATC	3 cut(s)	183, 202, 317
BstMAI	GTCTC	4 cut(s)	9, 104, 297, 465
BstMBI	GATC	3 cut(s)	180, 199, 314
BstMWI	GCNNNNNNNGC	1 cut(s)	439
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	4 cut(s)	87, 118, 287, 318
BstV1I	GCAGC	1 cut(s)	385
BstX2I	RGATCY	2 cut(s)	180, 314
BstYI	RGATCY	2 cut(s)	180, 314
BsuI	GTATCC	1 cut(s)	492
BsuRI	GGCC	2 cut(s)	104, 601
BtsCI	GGATG	1 cut(s)	48
BtsIMutI	CAGTG	3 cut(s)	73, 259, 261
Cac8I	GCNNGC	2 cut(s)	102, 396
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	2 cut(s)	389, 439
CviJI	RGCY	7 cut(s)	104, 123, 214, 284, 398, 569, 601
CviKI_1	RGCY	7 cut(s)	104, 123, 214, 284, 398, 569, 601
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	1 cut(s)	462
DpnI	GATC	3 cut(s)	182, 201, 316
DpnII	GATC	3 cut(s)	180, 199, 314
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
Eco130I	CCWWGG	2 cut(s)	209, 381
Eco57I	CTGAAG	3 cut(s)	209, 461, 513
EcoRI	GAATTC	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	2 cut(s)	209, 381
ErhI	CCWWGG	2 cut(s)	209, 381
FaeI	CATG	2 cut(s)	392, 442
FaiI	YATR	7 cut(s)	59, 89, 333, 348, 390, 440, 536
FalI	AAGNNNNNCTT	4 cut(s)	353, 385, 486, 518
FatI	CATG	2 cut(s)	388, 438
Fnu4HI	GCNGC	1 cut(s)	399
FokI	GGATG	1 cut(s)	55
Fsp4HI	GCNGC	1 cut(s)	399
GluI	GCNGC	1 cut(s)	399
GsaI	CCCAGC	1 cut(s)	78
HaeIII	GGCC	2 cut(s)	104, 601
Hin1II	CATG	2 cut(s)	392, 442
HinfI	GANTC	2 cut(s)	20, 488
HphI	GGTGA	3 cut(s)	58, 104, 370
Hpy166II	GTNNAC	1 cut(s)	541
Hpy188I	TCNGA	6 cut(s)	9, 25, 193, 228, 480, 493
Hpy188III	TCNNGA	1 cut(s)	583
Hpy8I	GTNNAC	1 cut(s)	541
HpyAV	CCTTC	2 cut(s)	419, 488
HpyCH4III	ACNGT	2 cut(s)	119, 265
HpyCH4V	TGCA	4 cut(s)	289, 320, 457, 590
HpyF10VI	GCNNNNNNNGC	1 cut(s)	439
HpyF3I	CTNAG	1 cut(s)	462
Hsp92II	CATG	2 cut(s)	392, 442
KpnI	GGTACC	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	180, 199, 314
LpnPI	CCDG	9 cut(s)	24, 60, 86, 324, 341, 351, 364, 380, 459
Lsp1109I	GCAGC	1 cut(s)	385
LweI	GCATC	3 cut(s)	87, 121, 502
MalI	GATC	3 cut(s)	182, 201, 316
MboI	GATC	3 cut(s)	180, 199, 314
MboII	GAAGA	2 cut(s)	209, 424
MflI	RGATCY	2 cut(s)	180, 314
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	4 cut(s)	11, 26, 204, 267
MluNI	TGGCCA	1 cut(s)	104
MnlI	CCTC	2 cut(s)	187, 195
Mox20I	TGGCCA	1 cut(s)	104
MroXI	GAANNNNTTC	1 cut(s)	222
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	4 cut(s)	35, 236, 311, 504
Msp20I	TGGCCA	1 cut(s)	104
MspCI	CTTAAG	1 cut(s)	235
MspR9I	CCNGG	1 cut(s)	339
Mva1269I	GAATGC	2 cut(s)	235, 592
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	439
NdeII	GATC	3 cut(s)	180, 199, 314
NlaIII	CATG	2 cut(s)	392, 442
NlaIV	GGNNCC	2 cut(s)	182, 299
NspI	RCATGY	1 cut(s)	392
PciI	ACATGT	1 cut(s)	388
PctI	GAATGC	2 cut(s)	235, 592
PdmI	GAANNNNTTC	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	20, 488
PkrI	GCNGC	1 cut(s)	400
PscI	ACATGT	1 cut(s)	388
Psp6I	CCWGG	1 cut(s)	337
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	2 cut(s)	182, 299
PstI	CTGCAG	2 cut(s)	291, 322
PsuI	RGATCY	2 cut(s)	180, 314
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SaqAI	TTAA	4 cut(s)	35, 236, 311, 504
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	3 cut(s)	180, 199, 314
ScrFI	CCNGG	1 cut(s)	339
SetI	ASST	6 cut(s)	94, 125, 286, 340, 448, 522
SfaNI	GCATC	3 cut(s)	87, 121, 502
SfcI	CTRYAG	4 cut(s)	87, 118, 287, 318
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	4 cut(s)	11, 26, 204, 267
SsiI	CCGC	1 cut(s)	295
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	2 cut(s)	209, 381
TaaI	ACNGT	2 cut(s)	119, 265
TaqI	TCGA	2 cut(s)	202, 403
TasI	AATT	4 cut(s)	11, 26, 204, 267
TfiI	GAWTC	2 cut(s)	20, 488
Tru1I	TTAA	4 cut(s)	35, 236, 311, 504
Tru9I	TTAA	4 cut(s)	35, 236, 311, 504
TscAI	CASTG	3 cut(s)	73, 259, 268
TseI	GCWGC	1 cut(s)	398
TspDTI	ATGAA	3 cut(s)	348, 355, 427
TspRI	CASTG	3 cut(s)	73, 259, 268
Vha464I	CTTAAG	1 cut(s)	235
XapI	RAATTY	1 cut(s)	204
XceI	RCATGY	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.