Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0010412

Physical Location & Seq

Genomic Coordinates Reverse (-)

27423431 .. 27424559

Gene Structure 1129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCTTCAGATCTTGGCGGAGGGATGGTTGTTGTGATCATGGGAGTCAGTGGTGCTGGCAAATCCACGATAGGTGAGATGCTGGCGAAAGAGATAAATTCTAGCTTTATAGATGCAGATGATTTCCACCCTCAATCAAACAAAGAAAAGATGCGTAAAGGGATCCCTCTCACAGAAGAAGACCGGATTCCTTGGCTTGAGACACTTCGAAATAGCGTGAGGGACAAGTTGGTCGCTGGAGGAACTGTGATTCTTGGGTGTTCGGCTCTGCAGAAGCGATATAGAGAAATTTTAAGATCTGCCGACCCTAATTATAAACCGGGAAGTTGCGCCAGTTTGGTGAAGTTCGTCTTGTTGGATGCTCAGGCAGAGGTGCTGGCTGCTAGATTAGAGAAAAGAATCGCGGAAGGGAAGCATTTCATGTCACCTGCACTTTTGCAGTCTCAGTTGGGGTTGCTTCAGATTGATGATTCTGAAGGAATACTTAAAGTTGATGCCACTTTAAGTCCTCAAGAAATTGTAAACACCATTCAAAGATTGCTTTCGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005975 GO:0006082 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016052 GO:0016054 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019520 GO:0019521 GO:0019523 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0046176 GO:0046183 GO:0046316 GO:0046395 GO:0071704 GO:0072329 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 map00030 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

AAA_33 SKI

Protein Analysis

184

Amino Acids

19.88

Weight (kDa)

6.15

Isoelectric Point (pI)

50.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_33	PF13671	10 - 139	8e-10	AAA domain
AAA_18	PF13238	11 - 135	5e-08	AAA domain
SKI	PF01202	18 - 133	3.1e-10	Shikimate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16790 AT2G16790 AT2G16790 AT2G16790 AT2G16790
fragaria_vesca	FvH4_7g33580 FvH4_7g33580 FvH4_7g33591
malus_domestica	MD01G1233600.v1.1 MD07G1305700.v1.1
prunus_persica	Prupe.2G323800_v2.0.a1
pyrus_communis	pycom07g27900
rosa_chinensis	RchiOBHm_Chr1g0383841
rosa_laevigata	RLG00000026092
rosa_multiflora	Rmu_ssc0000132.1_g000001
rosa_rugosa	Rorug01G0442500
rosa_samantha	Rh1AG468400 Rh1BG426100 Rh1CG438800 Rh1DG458900
rosa_wichuraiana	Rw1G040400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	315
AarI	CACCTGC	1 cut(s)	436
AasI	GACNNNNNNGTC	1 cut(s)	230
Acc36I	ACCTGC	1 cut(s)	436
AccII	CGCG	1 cut(s)	404
AciI	CCGC	2 cut(s)	18, 404
AclWI	GGATC	2 cut(s)	157, 170
AcsI	RAATTY	2 cut(s)	97, 288
AcuI	CTGAAG	2 cut(s)	443, 495
AgsI	TTSAA	1 cut(s)	533
AluBI	AGCT	1 cut(s)	105
AluI	AGCT	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	194, 447
AlwI	GGATC	2 cut(s)	157, 170
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	2 cut(s)	97, 288
Asp700I	GAANNNNTTC	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	332
AsuC2I	CCSGG	1 cut(s)	321
AsuHPI	GGTGA	3 cut(s)	86, 352, 417
AsuII	TTCGAA	1 cut(s)	208
BamHI	GGATCC	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	1 cut(s)	19
BclI	TGATCA	1 cut(s)	36
BcnI	CCSGG	1 cut(s)	321
BcoDI	GTCTC	2 cut(s)	194, 447
BfaI	CTAG	2 cut(s)	102, 384
BfmI	CTRYAG	1 cut(s)	269
BfuAI	ACCTGC	1 cut(s)	436
BglII	AGATCT	2 cut(s)	10, 296
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
Bme1390I	CCNGG	1 cut(s)	321
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	5 cut(s)	69, 103, 141, 349, 484
BpiI	GAAGAC	1 cut(s)	186
BpmI	CTGGAG	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	363
Bpu14I	TTCGAA	1 cut(s)	208
BpuEI	CTTGAG	2 cut(s)	218, 495
BpuMI	CCSGG	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	191
BsaWI	WCCGGW	1 cut(s)	183
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 231, 261
Bse1I	ACTGG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	191
BseGI	GGATG	2 cut(s)	30, 364
BseMII	CTCAG	2 cut(s)	377, 458
BseNI	ACTGG	1 cut(s)	333
BseXI	GCAGC	1 cut(s)	367
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	1 cut(s)	404
BsiSI	CCGG	2 cut(s)	184, 320
BslFI	GGGAC	1 cut(s)	236
BsmAI	GTCTC	2 cut(s)	194, 447
BsmFI	GGGAC	1 cut(s)	236
Bsp119I	TTCGAA	1 cut(s)	208
Bsp143I	GATC	4 cut(s)	10, 36, 162, 296
BspACI	CCGC	2 cut(s)	18, 404
BspCNI	CTCAG	2 cut(s)	376, 457
BspFNI	CGCG	1 cut(s)	404
BspLI	GGNNCC	1 cut(s)	164
BspMAI	CTGCAG	1 cut(s)	273
BspMI	ACCTGC	1 cut(s)	436
BspPI	GGATC	2 cut(s)	157, 170
BspT104I	TTCGAA	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	333
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	4 cut(s)	10, 36, 162, 296
BssT1I	CCWWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	247
BstBI	TTCGAA	1 cut(s)	208
BstC8I	GCNNGC	3 cut(s)	58, 84, 378
BstDEI	CTNAG	2 cut(s)	363, 444
BstF5I	GGATG	2 cut(s)	30, 364
BstFNI	CGCG	1 cut(s)	404
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	4 cut(s)	13, 39, 165, 299
BstMAI	GTCTC	2 cut(s)	194, 447
BstMBI	GATC	4 cut(s)	10, 36, 162, 296
BstSCI	CCNGG	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	269
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	1 cut(s)	367
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	3 cut(s)	10, 162, 296
BstYI	RGATCY	3 cut(s)	10, 162, 296
BtsCI	GGATG	2 cut(s)	30, 364
BtsIMutI	CAGTG	1 cut(s)	55
BveI	ACCTGC	1 cut(s)	436
Cac8I	GCNNGC	3 cut(s)	58, 84, 378
CfoI	GCGC	1 cut(s)	332
CviAII	CATG	2 cut(s)	40, 421
CviJI	RGCY	5 cut(s)	5, 105, 196, 266, 380
CviKI_1	RGCY	5 cut(s)	5, 105, 196, 266, 380
DdeI	CTNAG	2 cut(s)	363, 444
DpnI	GATC	4 cut(s)	12, 38, 164, 298
DpnII	GATC	4 cut(s)	10, 36, 162, 296
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
EciI	GGCGGA	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	191
Eco57I	CTGAAG	2 cut(s)	443, 495
EcoT14I	CCWWGG	1 cut(s)	191
ErhI	CCWWGG	1 cut(s)	191
FaeI	CATG	2 cut(s)	43, 424
FaiI	YATR	5 cut(s)	41, 110, 282, 315, 422
FalI	AAGNNNNNCTT	4 cut(s)	335, 367, 468, 500
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	2 cut(s)	39, 420
FbaI	TGATCA	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	2 cut(s)	37, 371
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	2 cut(s)	102, 384
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	1 cut(s)	381
GsuI	CTGGAG	1 cut(s)	258
HapII	CCGG	2 cut(s)	184, 320
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	2 cut(s)	43, 424
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HinfI	GANTC	5 cut(s)	45, 187, 250, 399, 470
HpaII	CCGG	2 cut(s)	184, 320
HphI	GGTGA	3 cut(s)	86, 352, 417
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188I	TCNGA	3 cut(s)	10, 462, 475
Hpy188III	TCNNGA	1 cut(s)	512
Hpy8I	GTNNAC	1 cut(s)	523
HpyAV	CCTTC	2 cut(s)	401, 470
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	4 cut(s)	116, 271, 431, 439
HpyF3I	CTNAG	2 cut(s)	363, 444
Hsp92II	CATG	2 cut(s)	43, 424
HspAI	GCGC	1 cut(s)	330
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	4 cut(s)	10, 36, 162, 296
LpnPI	CCDG	9 cut(s)	42, 68, 197, 222, 333, 346, 350, 362, 441
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	5 cut(s)	69, 103, 141, 349, 484
MaeI	CTAG	2 cut(s)	102, 384
MaeIII	GTNAC	1 cut(s)	423
MalI	GATC	4 cut(s)	12, 38, 164, 298
MboI	GATC	4 cut(s)	10, 36, 162, 296
MboII	GAAGA	2 cut(s)	188, 191
MflI	RGATCY	3 cut(s)	10, 162, 296
MluCI	AATT	4 cut(s)	97, 288, 310, 516
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	7 cut(s)	14, 141, 177, 213, 233, 364, 519
MroXI	GAANNNNTTC	1 cut(s)	416
MseI	TTAA	4 cut(s)	293, 486, 503, 550
MspI	CCGG	2 cut(s)	184, 320
MspR9I	CCNGG	1 cut(s)	321
MvnI	CGCG	1 cut(s)	404
NciI	CCSGG	1 cut(s)	321
NdeII	GATC	4 cut(s)	10, 36, 162, 296
NlaIII	CATG	2 cut(s)	43, 424
NlaIV	GGNNCC	1 cut(s)	164
NmuCI	GTSAC	1 cut(s)	423
NspV	TTCGAA	1 cut(s)	208
PaqCI	CACCTGC	1 cut(s)	436
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	4 cut(s)	187, 250, 399, 470
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PsiI	TTATAA	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	164
PstI	CTGCAG	1 cut(s)	273
PsuI	RGATCY	3 cut(s)	10, 162, 296
SaqAI	TTAA	4 cut(s)	293, 486, 503, 550
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	4 cut(s)	10, 36, 162, 296
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	4 cut(s)	76, 107, 375, 430
SfaNI	GCATC	5 cut(s)	69, 103, 141, 349, 484
SfcI	CTRYAG	1 cut(s)	269
SfuI	TTCGAA	1 cut(s)	208
SmlI	CTYRAG	2 cut(s)	197, 510
SmoI	CTYRAG	2 cut(s)	197, 510
Sse9I	AATT	4 cut(s)	97, 288, 310, 516
SsiI	CCGC	2 cut(s)	18, 404
SspMI	CTAG	2 cut(s)	102, 384
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	247
TaqI	TCGA	2 cut(s)	208, 545
TasI	AATT	4 cut(s)	97, 288, 310, 516
TfiI	GAWTC	4 cut(s)	187, 250, 399, 470
Tru1I	TTAA	4 cut(s)	293, 486, 503, 550
Tru9I	TTAA	4 cut(s)	293, 486, 503, 550
TscAI	CASTG	1 cut(s)	55
TseFI	GTSAC	1 cut(s)	423
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	1 cut(s)	423
TspDTI	ATGAA	1 cut(s)	409
TspRI	CASTG	1 cut(s)	55
XapI	RAATTY	2 cut(s)	97, 288
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	2 cut(s)	102, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.