Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012350

Physical Location & Seq

Genomic Coordinates Forward (+)

7510097 .. 7512502

Gene Structure 2406 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G17270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGACAAGAGTCAAGAGTAAACTAGACGAGGAACTGTCGTCTCCTTGGTTTTATACTGTTTGTACCATGGGAGGAATGCTTAGTGCCGGAACAACCCATTTGGCTATAACTCCTCTTGATGTCCTCAAAGTCAATATGCAGGTGAATCCAGTGAAGTACAATAGCATTCCTTCCGGTTTCTCTACTCTCTTAAGAGAGCATGGTCATTCTTATCTTTGGAGAGGTTGGTCAGGGAAGCTATTAGGCTATGGTGTTCAAGGTGGATGCAGATTTGGACTCTATGAGTACTTCAAGACACTCTACAGCGATGTGTTACCTAATCATAACAGAACTTCCATATATTTTCTCAGCAGTGCTTCTGCTCAAATATTCGCCGATATGGCTTTATGTCCTTTTGAAGCCATAAAAGTTAGAGTTCAGACGCAGCCTATGTTTGCAAAAGGGTTGCTTGATGGATTTCCAAGAGTGTATAGAAGTGAAGGTCTTGCTGGCTTCCACAGGGGACTTTTTCCGCTCTGGTGTCGCAATCTTCCATTTTCTATGGTGATGTTCTCAACGTTTGAGCAGTCAGTTGAGTTTATATATCAAAAGATTATCCAGAAAAGGAAGCAAGATTGCTCTAAAGCTCAACAACTCGGTGTCACATGTCTTGCTGGCTATACTGCTGGAGCCGTAGGTACAATCATCTCTAACCCCGCAGATGTGGTTCTTTCGTCTCTCTACAACAACAAAGCCAAGAATGTGTTGCAGGCTGTGAGGAATATTGGGTTTGTTGGTCTATTCACCAGAAGCCTTCCTGTTCGGATCACTATTGTTGGACCTGTCATTACTTTGCAATGGTTCTTTTATGATGCCATCAAAGTCTTAAGCGGATTCCCTACAAGTGGCGGAGTGAAGAAACCAGTGGATGCAGCTAAATTATCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

309

Amino Acids

34.28

Weight (kDa)

9.62

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	21 - 103	1.6e-17	Mitochondrial carrier protein
Mito_carr	PF00153	111 - 196	9.8e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17270
fragaria_vesca	FvH4_2g16870 FvH4_2g16870
malus_domestica	MD05G1139900.v1.1 MD10G1142200.v1.1
prunus_persica	Prupe.8G180700_v2.0.a1 Prupe.8G180700_v2.0.a1
pyrus_communis	pycom05g13510 pycom10g12190
rosa_chinensis	RchiOBHm_Chr6g0281001
rosa_laevigata	RLG00000013008
rosa_multiflora	Rmu_sc0012869.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187400
rosa_rugosa	Rorug06G0137800
rosa_samantha	Rh6AG250000 Rh6BG252200 Rh6CG252700 Rh6DG244400
rosa_wichuraiana	Rw6G021620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	130
Acc36I	ACCTGC	1 cut(s)	130
AccBSI	CCGCTC	1 cut(s)	514
AciI	CCGC	4 cut(s)	512, 696, 870, 888
AclI	AACGTT	1 cut(s)	557
AclWI	GGATC	1 cut(s)	812
AfaI	GTAC	4 cut(s)	64, 158, 287, 679
AfiI	CCNNNNNNNGG	1 cut(s)	884
AflII	CTTAAG	2 cut(s)	190, 865
AflIII	ACRYGT	1 cut(s)	644
AgsI	TTSAA	3 cut(s)	257, 292, 398
AluBI	AGCT	3 cut(s)	238, 626, 914
AluI	AGCT	3 cut(s)	238, 626, 914
Alw26I	GTCTC	2 cut(s)	45, 720
AlwI	GGATC	1 cut(s)	812
ApeKI	GCWGC	2 cut(s)	424, 911
AspS9I	GGNCC	1 cut(s)	818
AsuHPI	GGTGA	3 cut(s)	154, 556, 775
AvaII	GGWCC	1 cut(s)	818
BbvI	GCAGC	2 cut(s)	436, 923
BccI	CCATC	2 cut(s)	446, 863
BceAI	ACGGC	1 cut(s)	656
BcoDI	GTCTC	2 cut(s)	45, 720
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	301
BfrI	CTTAAG	2 cut(s)	190, 865
BfuAI	ACCTGC	1 cut(s)	130
BglI	GCCNNNNNGGC	1 cut(s)	380
BisI	GCNGC	2 cut(s)	425, 912
BlsI	GCNGC	2 cut(s)	426, 913
BmcAI	AGTACT	1 cut(s)	287
Bme18I	GGWCC	1 cut(s)	818
BmgT120I	GGNCC	1 cut(s)	818
BmiI	GGNNCC	1 cut(s)	670
BmsI	GCATC	3 cut(s)	254, 841, 898
BoxI	GACNNNNGTC	1 cut(s)	8
BpmI	CTGGAG	1 cut(s)	687
BsaJI	CCNNGG	2 cut(s)	44, 66
BsaWI	WCCGGW	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	1 cut(s)	884
Bse1I	ACTGG	2 cut(s)	149, 902
Bse3DI	GCAATG	1 cut(s)	842
BseDI	CCNNGG	2 cut(s)	44, 66
BseGI	GGATG	2 cut(s)	269, 913
BseLI	CCNNNNNNNGG	1 cut(s)	884
BseMI	GCAATG	1 cut(s)	842
BseMII	CTCAG	1 cut(s)	361
BseNI	ACTGG	2 cut(s)	149, 902
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	436, 923
BsiSI	CCGG	2 cut(s)	87, 174
BslFI	GGGAC	1 cut(s)	516
BslI	CCNNNNNNNGG	1 cut(s)	884
BsmAI	GTCTC	2 cut(s)	45, 720
BsmBI	CGTCTC	2 cut(s)	45, 720
BsmFI	GGGAC	1 cut(s)	516
BsmI	GAATGC	2 cut(s)	81, 165
Bsp143I	GATC	1 cut(s)	804
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	4 cut(s)	512, 696, 870, 888
BspCNI	CTCAG	1 cut(s)	360
BspLI	GGNNCC	1 cut(s)	670
BspMI	ACCTGC	1 cut(s)	130
BspPI	GGATC	1 cut(s)	812
BspTI	CTTAAG	2 cut(s)	190, 865
BsrBI	CCGCTC	1 cut(s)	514
BsrDI	GCAATG	1 cut(s)	842
BsrI	ACTGG	2 cut(s)	149, 902
BssECI	CCNNGG	2 cut(s)	44, 66
BssMI	GATC	1 cut(s)	804
BssT1I	CCWWGG	2 cut(s)	44, 66
Bst4CI	ACNGT	2 cut(s)	36, 58
BstAFI	CTTAAG	2 cut(s)	190, 865
BstC8I	GCNNGC	3 cut(s)	490, 655, 750
BstDEI	CTNAG	2 cut(s)	80, 347
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	269, 913
BstKTI	GATC	1 cut(s)	807
BstMAI	GTCTC	2 cut(s)	45, 720
BstMBI	GATC	1 cut(s)	804
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNSI	RCATGY	1 cut(s)	648
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	301
BstV1I	GCAGC	2 cut(s)	436, 923
BtgI	CCRYGG	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	321
BtsCI	GGATG	2 cut(s)	269, 913
BtsI	GCAGTG	1 cut(s)	358
BtsIMutI	CAGTG	4 cut(s)	156, 358, 909, 930
BveI	ACCTGC	1 cut(s)	130
Cac8I	GCNNGC	3 cut(s)	490, 655, 750
Cfr13I	GGNCC	1 cut(s)	818
CseI	GACGC	1 cut(s)	430
Csp6I	GTAC	4 cut(s)	63, 157, 286, 678
CviAII	CATG	3 cut(s)	67, 200, 645
CviQI	GTAC	4 cut(s)	63, 157, 286, 678
DdeI	CTNAG	2 cut(s)	80, 347
DpnI	GATC	1 cut(s)	806
DpnII	GATC	1 cut(s)	804
EciI	GGCGGA	1 cut(s)	903
Eco130I	CCWWGG	2 cut(s)	44, 66
Eco47I	GGWCC	1 cut(s)	818
EcoT14I	CCWWGG	2 cut(s)	44, 66
ErhI	CCWWGG	2 cut(s)	44, 66
Esp3I	CGTCTC	2 cut(s)	45, 720
FaeI	CATG	3 cut(s)	70, 203, 648
FalI	AAGNNNNNCTT	2 cut(s)	432, 464
FaqI	GGGAC	1 cut(s)	516
FatI	CATG	3 cut(s)	66, 199, 644
FauI	CCCGC	1 cut(s)	703
Fnu4HI	GCNGC	2 cut(s)	425, 912
FokI	GGATG	2 cut(s)	276, 920
Fsp4HI	GCNGC	2 cut(s)	425, 912
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	2 cut(s)	425, 912
GsuI	CTGGAG	1 cut(s)	687
HapII	CCGG	2 cut(s)	87, 174
HgaI	GACGC	1 cut(s)	430
Hin1II	CATG	3 cut(s)	70, 203, 648
HinfI	GANTC	4 cut(s)	9, 145, 276, 873
HpaII	CCGG	2 cut(s)	87, 174
HphI	GGTGA	3 cut(s)	154, 556, 775
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	2 cut(s)	420, 804
Hpy188III	TCNNGA	4 cut(s)	13, 116, 292, 598
Hpy8I	GTNNAC	1 cut(s)	20
HpyAV	CCTTC	3 cut(s)	180, 473, 803
HpyCH4III	ACNGT	2 cut(s)	36, 58
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	6 cut(s)	139, 267, 437, 748, 835, 911
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	2 cut(s)	80, 347
HpySE526I	ACGT	1 cut(s)	557
Hsp92II	CATG	3 cut(s)	70, 203, 648
Kzo9I	GATC	1 cut(s)	804
LmnI	GCTCC	1 cut(s)	668
Lsp1109I	GCAGC	2 cut(s)	436, 923
LweI	GCATC	3 cut(s)	254, 841, 898
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	1 cut(s)	557
MaeIII	GTNAC	2 cut(s)	312, 640
MalI	GATC	1 cut(s)	806
MbiI	CCGCTC	1 cut(s)	514
MboI	GATC	1 cut(s)	804
MboII	GAAGA	2 cut(s)	521, 907
MluCI	AATT	1 cut(s)	917
MlyI	GAGTC	2 cut(s)	18, 270
MmeI	TCCRAC	1 cut(s)	796
MnlI	CCTC	6 cut(s)	22, 65, 123, 134, 215, 750
MseI	TTAA	2 cut(s)	191, 866
MspCI	CTTAAG	2 cut(s)	190, 865
MspI	CCGG	2 cut(s)	87, 174
Mva1269I	GAATGC	2 cut(s)	81, 165
MwoI	GCNNNNNNNGC	1 cut(s)	380
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	1 cut(s)	804
NlaIII	CATG	3 cut(s)	70, 203, 648
NlaIV	GGNNCC	1 cut(s)	670
NmuCI	GTSAC	1 cut(s)	640
NspI	RCATGY	1 cut(s)	648
PaqCI	CACCTGC	1 cut(s)	130
PciI	ACATGT	1 cut(s)	644
PctI	GAATGC	2 cut(s)	81, 165
PfeI	GAWTC	2 cut(s)	145, 873
PkrI	GCNGC	2 cut(s)	426, 913
PleI	GAGTC	2 cut(s)	17, 270
PpsI	GAGTC	2 cut(s)	17, 270
PscI	ACATGT	1 cut(s)	644
PshAI	GACNNNNGTC	1 cut(s)	8
Psp1406I	AACGTT	1 cut(s)	557
PspN4I	GGNNCC	1 cut(s)	670
PspPI	GGNCC	1 cut(s)	818
RsaI	GTAC	4 cut(s)	64, 158, 287, 679
RsaNI	GTAC	4 cut(s)	63, 157, 286, 678
SaqAI	TTAA	2 cut(s)	191, 866
SatI	GCNGC	2 cut(s)	425, 912
Sau3AI	GATC	1 cut(s)	804
Sau96I	GGNCC	1 cut(s)	818
ScaI	AGTACT	1 cut(s)	287
SchI	GAGTC	2 cut(s)	18, 270
SfaNI	GCATC	3 cut(s)	254, 841, 898
SfcI	CTRYAG	1 cut(s)	301
SinI	GGWCC	1 cut(s)	818
SmlI	CTYRAG	2 cut(s)	190, 865
SmoI	CTYRAG	2 cut(s)	190, 865
Sse9I	AATT	1 cut(s)	917
SsiI	CCGC	4 cut(s)	512, 696, 870, 888
SspI	AATATT	2 cut(s)	369, 763
SspMI	CTAG	1 cut(s)	23
StyI	CCWWGG	2 cut(s)	44, 66
TaaI	ACNGT	2 cut(s)	36, 58
TaiI	ACGT	1 cut(s)	560
TasI	AATT	1 cut(s)	917
TatI	WGTACW	2 cut(s)	156, 285
TfiI	GAWTC	2 cut(s)	145, 873
Tru1I	TTAA	2 cut(s)	191, 866
Tru9I	TTAA	2 cut(s)	191, 866
TscAI	CASTG	4 cut(s)	156, 358, 909, 930
TseFI	GTSAC	1 cut(s)	640
TseI	GCWGC	2 cut(s)	424, 911
Tsp45I	GTSAC	1 cut(s)	640
TspRI	CASTG	4 cut(s)	156, 358, 909, 930
Vha464I	CTTAAG	2 cut(s)	190, 865
VpaK11BI	GGWCC	1 cut(s)	818
XceI	RCATGY	1 cut(s)	648
XspI	CTAG	1 cut(s)	23
ZrmI	AGTACT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.