Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003972

Physical Location & Seq

Genomic Coordinates Forward (+)

19496299 .. 19502541

Gene Structure 6243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0137800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2538 bp

ATGGGAGCTAGATCAGCTTTCAACTGGTTTCTGCTTTACATGGTTTTCTTGTCTCCATGTCTTCAGCTGACACAGTGCAATGTTACCTATGATAGGGAGGCTCTTCTCGTCAATGGACAGAGGAGAATTCTCTTTTCTGGTTCCATACACTATCATAGGAGTACTCCTGAGATGTGGGAAGATCTTATACAGAAGGCAAAAGATGGTGGCTTGGATGTCATAGACACCTATGTGTTTTGGAATCTTCATGAGCCTTCTCCGGGAAATTACACTTTTGAGGAGAGGTATGATTTGGTTCGGTTCATAAAGCTGGTTCAAACAGCAGGGCTCTATGTGCATCTTCGCATTGGACCTTATATATGTGCAGAATGGAATTTTGGGGGGTTTCCAGTTTGGCTCAAGTATGTTCCAGGCATTAGCTTCAGAACAAATAATGAGCCTTTCAAGGCAGCAATGCAGACGTTTACTCAGAAAATTGTCCAATTGATGAAGGATGAGGAATTATTTGAGTTTCAAGGTGGTCCCATTATCCTTTCTCAGATTGAGAATGAGTACGAGCACTTGAGCAAGGCTTTTGGGGAAGCCGGTCATGCATACATGACATGGGCTGCAGAGATGGCTGTTGGAATGGATACTGGGGTCCCATGGGTCATGTGCAAGGAAGATGATGCCCCAGACCCTGTGATAAACACTTGCAATGGGTTTTATTGTGACAATTTTTCTCCAAACAAACCATACAAGCCCACGATCTGGACTGAGGCTTGGACTGGCTGGTTTACACAATTTGGTGGCCCAAATTACAAGCGACCTGTTGAAGATTTAGCATTTGCAGTTGCTCGATTTGTTCAGAACGGAGGCTCCTTCATAAACTATTACATGTACCATGGAGGAACTAACTTTGGAAGAACTGCTGGAGGCCCTTTTATTATTACCAGCTATGACTACGATGCCCCCATTGATGAATATGGCTTGATCAGGCAACCCAAGTATGGTCACTTAATGGAACTCCATAAAGCTGTTAAGTTATGTGAGAAAGCTCTGCTAAATGCTGATCCGACTGTTACATCCTTAGGGAGATATCAACAGTCACATGTATTCTCTTCAAAGCCAGGAGGTTGTGCAGCATTTCTCTCAAACTACAATGCAAACTCAGCTGCAACGGTGACTTTCAATGACCGAAACTATGAGCTCCCTGCTTGGTCTATCAGCGTCCTTCCAGACTGCGAAAATGTTGTATTCAACACTGCCAAAGTGGGAGTTCAGACATCCCAAAAACAATTTTTTCCCACCAACTCTGAGTTGTGGTCATGGGAAACCTTCAGTGAAGACATTGCTTCATGGACTGGTGATACAACTCTCACAGTCATTGGTTTCTTAGATCAGTTGAACATCACTAGAGACTCCAGTGATTATCTATGGTACACCACCAGTGTCGACATAAGTCCATCTGAATCATTTCTGCGTAGAGGTAAGCATCCAATTCTCACCGTGCAGTCTGCTGGGAACGCTATGCATGTCTTTATCAATGACCAGCTCTCAGGATCAACTTATGGGACTCTGCAAGACCAGAGATTCACTTTTACAGGAGATGTAAACATGCATGCTGGTGTGAATAAAATTTCACTTCTAAGTGTGGCTGTTGGATTACCGAACAATGGTCCTCACTTTGAGACATGGAACTTGGGAGTACTAGGACCAGTTGTTCTACAAGGATTGGATCAAGGAAGCAGAGATTTATCAGGGCAGACATGGTCATACAAGGTTGGGCTAAAAGGAGAATCCATGAATCTCAGTTCTCCAACTTCCACCTCTGCAATGAATTGGACGAGGGTGTTTATAGGGACACAGAATCAACAGCCACTGACTTGGTATAAGGCCAATTTTGATACACCTGAAGGGGATGAGCCTTTGGCTTTGGACATGGGGAGCATGGGGAAGGGTCAAGTATGGATCAATGGGGAGAGTATTGGAAGATACTGGACTATTCATGCTAATGGTAACTGCAGCACGTGTAGTTATTCTGGTACATTCAGGATTAACAAGTGCCAATTTGGTTGTCTCCAACCAACTCAACAATGGTATCATGTTCCTCGGTCTTGGCTCAAGCCATCTCAAAATCTGTTGGTTGTTTTTGAGGAGCTTGCTGGCGATGTTTCAAAGATTGATCTTGTGAAAACATCCGTGAGGACCATCTGTGCCGAGATTTCTGAAAGTCACCCACTAGTTAGGGAATTGGACACCAAGAGCCAAGGCAAATTGAAAGAGCAAAAGAAGCCTAAACTTAGCCTAGAGTGTACAAATGGGCACTCTATTTCTGCTATTAAATTTTCAAGCTTCGGTACTCCATCCGGAAGTTGTGGGAACTATAAACATTGTACCTGTCACGCTCCAAACTCTACCCCTGTGCTAAATAAGAGGTGCGTAGGTAAGCAGAAGTGTTCAGTGACCGTATCGAATGCAAACTTTGGCATGGACCCTTGCCCAGGCACAGTGAAAAAATTATCTGTGGAAGCTATTTGTGCCCCTATAACTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

845

Amino Acids

94.34

Weight (kDa)

6.15

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	35 - 339	2.2e-122	Glycosyl hydrolases family 35
Glyco_hydro_42	PF02449	55 - 203	7.2e-06	Beta-galactosidase
GHD	PF17834	362 - 418	3.4e-24	Beta-sandwich domain in beta galactosidase
BetaGal_gal-bd	PF21467	471 - 538	9e-07	Beta-galactosidase, galactose-binding domain
BetaGal_gal-bd	PF21467	621 - 706	5.7e-28	Beta-galactosidase, galactose-binding domain
SUEL_Lectin	PF02140	763 - 840	4.7e-20	D-galactoside/L-rhamnose binding SUEL lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17290 AT2G17290 AT4G35310 AT4G35310 AT4G38230 AT4G38230 AT4G38230 AT4G38230
fragaria_vesca	FvH4_2g16880 FvH4_2g16880 FvH4_2g16880 FvH4_2g16880 FvH4_2g16880
malus_domestica	MD05G1140300.v1.1 MD05G1140600.v1.1 MD10G1142300.v1.1
prunus_persica	Prupe.8G180800_v2.0.a1 Prupe.8G180800_v2.0.a1
pyrus_communis	pycom05g13570
rosa_chinensis	RchiOBHm_Chr6g0281011
rosa_laevigata	RLG00000013006
rosa_multiflora	Rmu_co8419211.1_g000001 Rmu_sc0012869.1_g000002
rosa_roxburghii	Rroxscaffold_7G00187390
rosa_rugosa	Rorug06G0137800 Rorug06G0137900 Rorug06G0138000 Rorug06G0138100
rosa_samantha	Rh6AG250100 Rh6BG252400 Rh6CG252800 Rh6DG244500
rosa_wichuraiana	Rw6G021630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	750
AccI	GTMKAC	1 cut(s)	1434
AccIII	TCCGGA	1 cut(s)	2348
AclWI	GGATC	4 cut(s)	1046, 1549, 1725, 1958
AcsI	RAATTY	4 cut(s)	126, 373, 1617, 2324
AcuI	CTGAAG	4 cut(s)	47, 406, 1303, 1914
AcvI	CACGTG	1 cut(s)	2010
AfaI	GTAC	9 cut(s)	163, 554, 881, 1421, 1689, 2026, 2296, 2341, 2377
AfiI	CCNNNNNNNGG	6 cut(s)	93, 260, 750, 989, 1655, 2483
AflIII	ACRYGT	3 cut(s)	876, 1090, 2009
AhlI	ACTAGT	1 cut(s)	2221
AjnI	CCWGG	3 cut(s)	409, 1108, 2482
AjuI	GAANNNNNNNTTGG	2 cut(s)	360, 392
AleI	CACNNNNGTG	1 cut(s)	230
AloI	GAACNNNNNNTCC	4 cut(s)	842, 874, 1686, 1718
Alw21I	GWGCWC	2 cut(s)	561, 1191
Alw26I	GTCTC	4 cut(s)	57, 1392, 1664, 2063
AlwI	GGATC	4 cut(s)	1046, 1549, 1725, 1958
AlwNI	CAGNNNCTG	2 cut(s)	680, 1861
Aor13HI	TCCGGA	1 cut(s)	2348
AoxI	GGCC	3 cut(s)	790, 916, 1875
ApeKI	GCWGC	5 cut(s)	449, 608, 1121, 1154, 2004
ApoI	RAATTY	4 cut(s)	126, 373, 1617, 2324
Asp700I	GAANNNNTTC	1 cut(s)	1455
AspS9I	GGNCC	9 cut(s)	350, 521, 640, 791, 917, 1658, 1694, 2187, 2473
AsuC2I	CCSGG	1 cut(s)	261
AsuHPI	GGTGA	4 cut(s)	1174, 1358, 1477, 2207
AvaII	GGWCC	7 cut(s)	350, 521, 640, 1658, 1694, 2187, 2473
AxyI	CCTNAGG	1 cut(s)	1069
BaeGI	GKGCMC	2 cut(s)	2307, 2524
BaeI	ACNNNNGTAYC	4 cut(s)	624, 657, 2063, 2096
BanII	GRGCYC	2 cut(s)	330, 1191
BarI	GAAGNNNNNNTAC	2 cut(s)	171, 203
BbrPI	CACGTG	1 cut(s)	2010
BbsI	GAAGAC	2 cut(s)	53, 1332
Bbv12I	GWGCWC	2 cut(s)	561, 1191
BbvI	GCAGC	5 cut(s)	461, 595, 1133, 1141, 2016
BccI	CCATC	6 cut(s)	197, 610, 1453, 2116, 2198, 2353
BciT130I	CCWGG	3 cut(s)	411, 1110, 2484
BciVI	GTATCC	1 cut(s)	625
BclI	TGATCA	1 cut(s)	972
BcnI	CCSGG	1 cut(s)	261
BcoDI	GTCTC	4 cut(s)	57, 1392, 1664, 2063
BcuI	ACTAGT	1 cut(s)	2221
BfaI	CTAG	5 cut(s)	9, 1395, 1691, 2222, 2288
BfmI	CTRYAG	2 cut(s)	609, 2002
BfuI	GTATCC	1 cut(s)	625
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	5 cut(s)	450, 609, 1122, 1155, 2005
BlsI	GCNGC	5 cut(s)	451, 610, 1123, 1156, 2006
BmcAI	AGTACT	2 cut(s)	163, 1689
Bme1390I	CCNGG	4 cut(s)	261, 411, 1110, 2484
Bme18I	GGWCC	7 cut(s)	350, 521, 640, 1658, 1694, 2187, 2473
BmgT120I	GGNCC	9 cut(s)	350, 521, 640, 791, 917, 1658, 1694, 2187, 2473
BmiI	GGNNCC	6 cut(s)	142, 523, 641, 642, 859, 2475
BmrFI	CCNGG	4 cut(s)	261, 411, 1110, 2484
BmrI	ACTGGG	1 cut(s)	645
BmsI	GCATC	4 cut(s)	346, 658, 937, 1483
BmuI	ACTGGG	1 cut(s)	645
BoxI	GACNNNNGTC	1 cut(s)	1440
BpiI	GAAGAC	2 cut(s)	53, 1332
BpmI	CTGGAG	2 cut(s)	933, 1387
BpuEI	CTTGAG	3 cut(s)	383, 583, 2087
BpuMI	CCSGG	1 cut(s)	261
BsaAI	YACGTR	1 cut(s)	2010
BsaJI	CCNNGG	5 cut(s)	644, 883, 2090, 2248, 2482
BsaWI	WCCGGW	1 cut(s)	2348
BsaXI	ACNNNNNCTCC	2 cut(s)	842, 872
Bsc4I	CCNNNNNNNGG	6 cut(s)	93, 260, 750, 989, 1655, 2483
Bse118I	RCCGGY	1 cut(s)	584
Bse1I	ACTGG	9 cut(s)	29, 389, 640, 772, 1348, 1404, 1428, 1697, 1982
Bse21I	CCTNAGG	1 cut(s)	1069
Bse3DI	GCAATG	5 cut(s)	85, 459, 703, 1329, 1821
BseAI	TCCGGA	1 cut(s)	2348
BseBI	CCWGG	3 cut(s)	411, 1110, 2484
BseDI	CCNNGG	5 cut(s)	644, 883, 2090, 2248, 2482
BseGI	GGATG	8 cut(s)	220, 499, 1064, 1265, 1474, 1906, 2177, 2345
BseLI	CCNNNNNNNGG	6 cut(s)	93, 260, 750, 989, 1655, 2483
BseMI	GCAATG	5 cut(s)	85, 459, 703, 1329, 1821
BseMII	CTCAG	8 cut(s)	159, 482, 551, 747, 1164, 1287, 1551, 1804
BseNI	ACTGG	9 cut(s)	29, 389, 640, 772, 1348, 1404, 1428, 1697, 1982
BseRI	GAGGAG	3 cut(s)	136, 293, 2150
BseSI	GKGCMC	2 cut(s)	2307, 2524
BseXI	GCAGC	5 cut(s)	461, 595, 1133, 1141, 2016
BseYI	CCCAGC	1 cut(s)	1499
BsgI	GTGCAG	3 cut(s)	384, 1140, 1511
BshFI	GGCC	3 cut(s)	792, 918, 1877
BsiHKAI	GWGCWC	2 cut(s)	561, 1191
BsiSI	CCGG	3 cut(s)	260, 585, 2349
BslFI	GGGAC	4 cut(s)	507, 626, 1567, 1855
BslI	CCNNNNNNNGG	6 cut(s)	93, 260, 750, 989, 1655, 2483
BsmAI	GTCTC	4 cut(s)	57, 1392, 1664, 2063
BsmFI	GGGAC	4 cut(s)	507, 626, 1567, 1855
BsmI	GAATGC	1 cut(s)	2461
BsnI	GGCC	3 cut(s)	792, 918, 1877
Bsp1286I	GDGCHC	5 cut(s)	330, 561, 1191, 2307, 2524
Bsp13I	TCCGGA	1 cut(s)	2348
Bsp1407I	TGTACA	1 cut(s)	2294
Bsp19I	CCATGG	2 cut(s)	644, 883
BspANI	GGCC	3 cut(s)	792, 918, 1877
BspCNI	CTCAG	8 cut(s)	160, 481, 550, 748, 1163, 1288, 1550, 1803
BspEI	TCCGGA	1 cut(s)	2348
BspHI	TCATGA	1 cut(s)	247
BspLI	GGNNCC	6 cut(s)	142, 523, 641, 642, 859, 2475
BspMAI	CTGCAG	2 cut(s)	613, 2006
BspPI	GGATC	4 cut(s)	1046, 1549, 1725, 1958
BspQI	GCTCTTC	1 cut(s)	108
BsrDI	GCAATG	5 cut(s)	85, 459, 703, 1329, 1821
BsrFI	RCCGGY	1 cut(s)	584
BsrGI	TGTACA	1 cut(s)	2294
BsrI	ACTGG	9 cut(s)	29, 389, 640, 772, 1348, 1404, 1428, 1697, 1982
BssAI	RCCGGY	1 cut(s)	584
BssECI	CCNNGG	5 cut(s)	644, 883, 2090, 2248, 2482
BssT1I	CCWWGG	3 cut(s)	644, 883, 2248
Bst2UI	CCWGG	3 cut(s)	411, 1110, 2484
Bst4CI	ACNGT	8 cut(s)	75, 1060, 1086, 1162, 1363, 1489, 2449, 2491
Bst6I	CTCTTC	2 cut(s)	108, 1105
BstAUI	TGTACA	1 cut(s)	2294
BstBAI	YACGTR	1 cut(s)	2010
BstC8I	GCNNGC	3 cut(s)	1602, 2142, 2146
BstDSI	CCRYGG	2 cut(s)	644, 883
BstENI	CCTNNNNNAGG	2 cut(s)	91, 2481
BstF5I	GGATG	8 cut(s)	220, 499, 1064, 1265, 1474, 1906, 2177, 2345
BstMAI	GTCTC	4 cut(s)	57, 1392, 1664, 2063
BstMWI	GCNNNNNNNGC	8 cut(s)	14, 334, 590, 617, 1151, 1505, 2272, 2519
BstNI	CCWGG	3 cut(s)	411, 1110, 2484
BstNSI	RCATGY	5 cut(s)	880, 1094, 1517, 1600, 1604
BstPAI	GACNNNNGTC	1 cut(s)	1440
BstSCI	CCNGG	4 cut(s)	259, 409, 1108, 2482
BstSFI	CTRYAG	2 cut(s)	609, 2002
BstSLI	GKGCMC	2 cut(s)	2307, 2524
BstV1I	GCAGC	5 cut(s)	461, 595, 1133, 1141, 2016
BstV2I	GAAGAC	2 cut(s)	53, 1332
BstX2I	RGATCY	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	1866
BstYI	RGATCY	1 cut(s)	181
Bsu36I	CCTNAGG	1 cut(s)	1069
BsuI	GTATCC	1 cut(s)	625
BsuRI	GGCC	3 cut(s)	792, 918, 1877
BtgI	CCRYGG	2 cut(s)	644, 883
BtgZI	GCGATG	1 cut(s)	2163
BtsCI	GGATG	8 cut(s)	220, 499, 1064, 1265, 1474, 1906, 2177, 2345
BtsI	GCAGTG	1 cut(s)	1242
BtsIMutI	CAGTG	8 cut(s)	80, 1242, 1327, 1411, 1435, 1859, 2448, 2496
Cac8I	GCNNGC	3 cut(s)	1602, 2142, 2146
CaiI	CAGNNNCTG	2 cut(s)	680, 1861
CciI	TCATGA	1 cut(s)	247
Cfr10I	RCCGGY	1 cut(s)	584
Cfr13I	GGNCC	9 cut(s)	350, 521, 640, 791, 917, 1658, 1694, 2187, 2473
CseI	GACGC	1 cut(s)	1198
Csp6I	GTAC	9 cut(s)	162, 553, 880, 1420, 1688, 2025, 2295, 2340, 2376
CviQI	GTAC	9 cut(s)	162, 553, 880, 1420, 1688, 2025, 2295, 2340, 2376
Eam1104I	CTCTTC	2 cut(s)	108, 1105
EarI	CTCTTC	2 cut(s)	108, 1105
Ecl136II	GAGCTC	1 cut(s)	1189
Eco130I	CCWWGG	3 cut(s)	644, 883, 2248
Eco24I	GRGCYC	2 cut(s)	330, 1191
Eco32I	GATATC	1 cut(s)	1079
Eco47I	GGWCC	7 cut(s)	350, 521, 640, 1658, 1694, 2187, 2473
Eco53kI	GAGCTC	1 cut(s)	1189
Eco57I	CTGAAG	4 cut(s)	47, 406, 1303, 1914
Eco72I	CACGTG	1 cut(s)	2010
Eco81I	CCTNAGG	1 cut(s)	1069
EcoICRI	GAGCTC	1 cut(s)	1189
EcoNI	CCTNNNNNAGG	2 cut(s)	91, 2481
EcoO109I	RGGNCCY	2 cut(s)	640, 917
EcoRI	GAATTC	1 cut(s)	126
EcoRII	CCWGG	3 cut(s)	409, 1108, 2482
EcoRV	GATATC	1 cut(s)	1079
EcoT14I	CCWWGG	3 cut(s)	644, 883, 2248
EcoT22I	ATGCAT	3 cut(s)	595, 1515, 1602
EcoT38I	GRGCYC	2 cut(s)	330, 1191
ErhI	CCWWGG	3 cut(s)	644, 883, 2248
FaqI	GGGAC	4 cut(s)	507, 626, 1567, 1855
FbaI	TGATCA	1 cut(s)	972
FblI	GTMKAC	1 cut(s)	1434
Fnu4HI	GCNGC	5 cut(s)	450, 609, 1122, 1155, 2005
FokI	GGATG	8 cut(s)	227, 506, 1051, 1252, 1461, 1913, 2164, 2332
FriOI	GRGCYC	2 cut(s)	330, 1191
Fsp4HI	GCNGC	5 cut(s)	450, 609, 1122, 1155, 2005
FspBI	CTAG	5 cut(s)	9, 1395, 1691, 2222, 2288
GluI	GCNGC	5 cut(s)	450, 609, 1122, 1155, 2005
GsaI	CCCAGC	1 cut(s)	1503
GsuI	CTGGAG	2 cut(s)	933, 1387
HaeIII	GGCC	3 cut(s)	792, 918, 1877
HapII	CCGG	3 cut(s)	260, 585, 2349
HgaI	GACGC	1 cut(s)	1198
HincII	GTYRAC	1 cut(s)	1435
HindII	GTYRAC	1 cut(s)	1435
HindIII	AAGCTT	1 cut(s)	2332
HinfI	GANTC	8 cut(s)	241, 1400, 1451, 1555, 1572, 1778, 1786, 1849
HpaII	CCGG	3 cut(s)	260, 585, 2349
HphI	GGTGA	4 cut(s)	1174, 1358, 1477, 2207
Hpy166II	GTNNAC	6 cut(s)	465, 777, 1422, 1435, 1594, 2295
Hpy188I	TCNGA	9 cut(s)	425, 471, 540, 849, 1056, 1263, 1297, 1450, 2209
Hpy188III	TCNNGA	7 cut(s)	167, 248, 751, 1217, 1539, 2032, 2349
Hpy8I	GTNNAC	6 cut(s)	465, 777, 1422, 1435, 1594, 2295
HpyAV	CCTTC	8 cut(s)	187, 264, 484, 871, 1223, 1327, 1889, 1930
HpyCH4III	ACNGT	8 cut(s)	75, 1060, 1086, 1162, 1363, 1489, 2449, 2491
HpyCH4IV	ACGT	2 cut(s)	461, 2009
HpyF10VI	GCNNNNNNNGC	8 cut(s)	14, 334, 590, 617, 1151, 1505, 2272, 2519
HpySE526I	ACGT	2 cut(s)	461, 2009
KflI	GGGWCCC	1 cut(s)	640
Kpn2I	TCCGGA	1 cut(s)	2348
Ksp22I	TGATCA	1 cut(s)	972
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	6 cut(s)	5, 863, 1194, 1926, 2137, 2392
Lsp1109I	GCAGC	5 cut(s)	461, 595, 1133, 1141, 2016
LweI	GCATC	4 cut(s)	346, 658, 937, 1483
MaeI	CTAG	5 cut(s)	9, 1395, 1691, 2222, 2288
MaeII	ACGT	2 cut(s)	461, 2009
MfeI	CAATTG	1 cut(s)	482
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	5 cut(s)	330, 561, 1191, 2307, 2524
MlyI	GAGTC	2 cut(s)	1394, 1549
MmeI	TCCRAC	5 cut(s)	604, 1079, 1621, 1823, 2086
Mph1103I	ATGCAT	3 cut(s)	595, 1515, 1602
MroI	TCCGGA	1 cut(s)	2348
MroXI	GAANNNNTTC	1 cut(s)	1455
MseI	TTAA	4 cut(s)	998, 1020, 2037, 2322
MslI	CAYNNNNRTG	3 cut(s)	230, 1605, 1992
MspA1I	CMGCKG	2 cut(s)	67, 1154
MspI	CCGG	3 cut(s)	260, 585, 2349
MspR9I	CCNGG	4 cut(s)	261, 411, 1110, 2484
MunI	CAATTG	1 cut(s)	482
Mva1269I	GAATGC	1 cut(s)	2461
MvaI	CCWGG	3 cut(s)	411, 1110, 2484
MwoI	GCNNNNNNNGC	8 cut(s)	14, 334, 590, 617, 1151, 1505, 2272, 2519
NciI	CCSGG	1 cut(s)	261
NcoI	CCATGG	2 cut(s)	644, 883
NlaIV	GGNNCC	6 cut(s)	142, 523, 641, 642, 859, 2475
NmeAIII	GCCGAG	1 cut(s)	2224
NmuCI	GTSAC	7 cut(s)	710, 992, 1086, 1162, 2213, 2381, 2443
NsiI	ATGCAT	3 cut(s)	595, 1515, 1602
NspI	RCATGY	5 cut(s)	880, 1094, 1517, 1600, 1604
OliI	CACNNNNGTG	1 cut(s)	230
PaeI	GCATGC	1 cut(s)	1604
PagI	TCATGA	1 cut(s)	247
PciI	ACATGT	2 cut(s)	876, 1090
PciSI	GCTCTTC	1 cut(s)	108
PctI	GAATGC	1 cut(s)	2461
PdmI	GAANNNNTTC	1 cut(s)	1455
PfeI	GAWTC	6 cut(s)	241, 1451, 1572, 1778, 1786, 1849
PflFI	GACNNNGTC	1 cut(s)	1750
PflMI	CCANNNNNTGG	1 cut(s)	750
PfoI	TCCNGGA	1 cut(s)	259
PkrI	GCNGC	5 cut(s)	451, 610, 1123, 1156, 2006
PleI	GAGTC	2 cut(s)	1394, 1549
PmaCI	CACGTG	1 cut(s)	2010
PmlI	CACGTG	1 cut(s)	2010
PpsI	GAGTC	2 cut(s)	1394, 1549
Ppu21I	YACGTR	1 cut(s)	2010
PpuMI	RGGWCCY	1 cut(s)	640
PscI	ACATGT	2 cut(s)	876, 1090
PshAI	GACNNNNGTC	1 cut(s)	1440
Psp124BI	GAGCTC	1 cut(s)	1191
Psp5II	RGGWCCY	1 cut(s)	640
Psp6I	CCWGG	3 cut(s)	409, 1108, 2482
PspCI	CACGTG	1 cut(s)	2010
PspFI	CCCAGC	1 cut(s)	1499
PspGI	CCWGG	3 cut(s)	409, 1108, 2482
PspN4I	GGNNCC	6 cut(s)	142, 523, 641, 642, 859, 2475
PspPI	GGNCC	9 cut(s)	350, 521, 640, 791, 917, 1658, 1694, 2187, 2473
PspPPI	RGGWCCY	1 cut(s)	640
PstI	CTGCAG	2 cut(s)	613, 2006
PstNI	CAGNNNCTG	2 cut(s)	680, 1861
PsuI	RGATCY	1 cut(s)	181
PsyI	GACNNNGTC	1 cut(s)	1750
PvuII	CAGCTG	2 cut(s)	67, 1154
RsaI	GTAC	9 cut(s)	163, 554, 881, 1421, 1689, 2026, 2296, 2341, 2377
RsaNI	GTAC	9 cut(s)	162, 553, 880, 1420, 1688, 2025, 2295, 2340, 2376
RseI	CAYNNNNRTG	3 cut(s)	230, 1605, 1992
SacI	GAGCTC	1 cut(s)	1191
SalI	GTCGAC	1 cut(s)	1433
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	4 cut(s)	998, 1020, 2037, 2322
SatI	GCNGC	5 cut(s)	450, 609, 1122, 1155, 2005
Sau96I	GGNCC	9 cut(s)	350, 521, 640, 791, 917, 1658, 1694, 2187, 2473
ScaI	AGTACT	2 cut(s)	163, 1689
SchI	GAGTC	2 cut(s)	1394, 1549
ScrFI	CCNGG	4 cut(s)	261, 411, 1110, 2484
SduI	GDGCHC	5 cut(s)	330, 561, 1191, 2307, 2524
SfaNI	GCATC	4 cut(s)	346, 658, 937, 1483
SfcI	CTRYAG	2 cut(s)	609, 2002
SinI	GGWCC	7 cut(s)	350, 521, 640, 1658, 1694, 2187, 2473
SmiMI	CAYNNNNRTG	3 cut(s)	230, 1605, 1992
SmlI	CTYRAG	3 cut(s)	398, 562, 2102
SmoI	CTYRAG	3 cut(s)	398, 562, 2102
SpeI	ACTAGT	1 cut(s)	2221
SphI	GCATGC	1 cut(s)	1604
SspMI	CTAG	5 cut(s)	9, 1395, 1691, 2222, 2288
SstI	GAGCTC	1 cut(s)	1191
StyD4I	CCNGG	4 cut(s)	259, 409, 1108, 2482
StyI	CCWWGG	3 cut(s)	644, 883, 2248
TaaI	ACNGT	8 cut(s)	75, 1060, 1086, 1162, 1363, 1489, 2449, 2491
TaiI	ACGT	2 cut(s)	464, 2012
TaqI	TCGA	3 cut(s)	838, 1434, 2453
TaqII	GACCGA	2 cut(s)	1191, 2082
TatI	WGTACW	3 cut(s)	161, 1687, 2294
TfiI	GAWTC	6 cut(s)	241, 1451, 1572, 1778, 1786, 1849
Tru1I	TTAA	4 cut(s)	998, 1020, 2037, 2322
Tru9I	TTAA	4 cut(s)	998, 1020, 2037, 2322
TscAI	CASTG	8 cut(s)	80, 1249, 1327, 1411, 1435, 1866, 2448, 2496
TseFI	GTSAC	7 cut(s)	710, 992, 1086, 1162, 2213, 2381, 2443
TseI	GCWGC	5 cut(s)	449, 608, 1121, 1154, 2004
Tsp45I	GTSAC	7 cut(s)	710, 992, 1086, 1162, 2213, 2381, 2443
TspDTI	ATGAA	9 cut(s)	236, 292, 503, 853, 975, 1326, 1799, 1832, 1976
TspGWI	ACGGA	2 cut(s)	867, 2170
TspRI	CASTG	8 cut(s)	80, 1249, 1327, 1411, 1435, 1866, 2448, 2496
Tth111I	GACNNNGTC	1 cut(s)	1750
Van91I	CCANNNNNTGG	1 cut(s)	750
VpaK11BI	GGWCC	7 cut(s)	350, 521, 640, 1658, 1694, 2187, 2473
XagI	CCTNNNNNAGG	2 cut(s)	91, 2481
XapI	RAATTY	4 cut(s)	126, 373, 1617, 2324
XceI	RCATGY	5 cut(s)	880, 1094, 1517, 1600, 1604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2073
XmiI	GTMKAC	1 cut(s)	1434
XmnI	GAANNNNTTC	1 cut(s)	1455
XspI	CTAG	5 cut(s)	9, 1395, 1691, 2222, 2288
ZrmI	AGTACT	2 cut(s)	163, 1689
Zsp2I	ATGCAT	3 cut(s)	595, 1515, 1602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.