Rmu_sc0012869.1_g000002

Calcium-dependent protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012869.1
Physical Location & Seq
Forward (+)
12706 .. 15628
2923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012869.1_g000002.1.cds

Sequence Viewer

Length: 1251 bp
atgcaccatttggctggtcacaagaacattgtgactatcaaaggtgcatatgaggacccgctgtatgttcatattgtgatggagctttgcgctgggggtgagttgtttgaccggatcatccagaggggacattacagtgagaggaaggcagctgagctgacaaagattattgttggggttgttgaagcttgccattcacttggagttatgcatagggatctgaagcccgaaaacttcttgctggttaacaaggatgatgatttctcactcaaggccattgattttgggctctcagtcttcttcaaaccaggtcaagttttcactgatgtggttggaagcccatactacgttgctcctgaagtactcctcaagcattatggaccagaagcggatgtgtggactgctggcgtcatactatatattttgctaagtggcgtgccgccattttgggcagaaactcagcagggaatctttgatgcggtgttgaagggatatattgacttcgagtcagatccatggcccgtgatatctgacagtgcaaaagacattatacggaagatgttatgttcccggcctaaagaccgcttgtctgctcatgaagttttatgtcacccttggatttgtgaaaatggtgttgctcctgacagagcacttgatccagctgtactttctcgtctcaaacagttttctgctatgaacaagttaaagaagatggctttgcgggtaatagctgaaagcctttctgaggaagagattgctgggctgcgagagatgttcaaggcaatggatactgataatagtggtgcaatcacgtttgatgaactcaaagcggggttgcgaaaatatggctctaccatgaaggatgcagagatccgtgatcttatggatgcagctgatgttgacaacagtgggactattgattatggggaatttatagctgctacagtccatctcaacaaactagaacgtgaagaacatcttgttgctgccttcagatactttgacaaggatggaagtggctatattacagttgatgagctccagcaagcttgtgcagagcataatatgactgacgttcttcttgaagatattatcaaagaagttgatcaagataatgatggaagaattgactacggtgaatttgttgccatgatgcaaaaaggcaatgtgaaaggccatatagctattggaagacggactatgaggaacagtttgaatttgagcatgagagatgcaccaggagccctttag

Protein Analysis

416

Amino Acids

46.47

Weight (kDa)

5.19

Isoelectric Point (pI)

33.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 59, 389, 440, 479, 583, 721, 830
AclWI GGATC 5 cut(s) 122, 225, 506, 650, 865
AcsI RAATTY 3 cut(s) 929, 1139, 1216
AcuI CTGAAG 3 cut(s) 242, 378, 976
AcyI GRCGYC 1 cut(s) 408
AfaI GTAC 2 cut(s) 363, 666
AfiI CCNNNNNNNGG 1 cut(s) 745
AgsI TTSAA 6 cut(s) 185, 304, 487, 778, 1085, 1216
AhdI GACNNNNNGTC 2 cut(s) 505, 586
AjnI CCWGG 2 cut(s) 307, 1237
AleI CACNNNNGTG 1 cut(s) 326
Alw21I GWGCWC 2 cut(s) 652, 1041
Alw26I GTCTC 1 cut(s) 680
AlwI GGATC 5 cut(s) 122, 225, 506, 650, 865
AoxI GGCC 4 cut(s) 273, 518, 572, 1174
ApeKI GCWGC 5 cut(s) 149, 763, 890, 938, 986
ApoI RAATTY 3 cut(s) 929, 1139, 1216
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 3 cut(s) 55, 380, 519
AsuC2I CCSGG 1 cut(s) 571
AsuHPI GGTGA 3 cut(s) 110, 602, 1148
AvaII GGWCC 2 cut(s) 55, 380
BanII GRGCYC 3 cut(s) 291, 1041, 1246
BbsI GAAGAC 2 cut(s) 289, 1198
Bbv12I GWGCWC 2 cut(s) 652, 1041
BbvI GCAGC 5 cut(s) 161, 750, 902, 925, 973
BccI CCATC 5 cut(s) 73, 706, 957, 1004, 1112
BciT130I CCWGG 2 cut(s) 309, 1239
BciVI GTATCC 1 cut(s) 781
BclI TGATCA 1 cut(s) 1105
BcnI CCSGG 1 cut(s) 571
BcoDI GTCTC 1 cut(s) 680
BfaI CTAG 1 cut(s) 962
BfmI CTRYAG 1 cut(s) 942
BfuI GTATCC 1 cut(s) 781
BisI GCNGC 6 cut(s) 150, 440, 764, 891, 939, 987
BlpI GCTNAGC 1 cut(s) 153
BlsI GCNGC 6 cut(s) 151, 441, 765, 892, 940, 988
BmcAI AGTACT 1 cut(s) 363
Bme1390I CCNGG 3 cut(s) 309, 571, 1239
Bme18I GGWCC 2 cut(s) 55, 380
BmeRI GACNNNNNGTC 2 cut(s) 505, 586
BmgT120I GGNCC 3 cut(s) 55, 380, 519
BmiI GGNNCC 2 cut(s) 57, 1243
BmrFI CCNGG 3 cut(s) 309, 571, 1239
BmsI GCATC 5 cut(s) 466, 853, 877, 1143, 1222
BpiI GAAGAC 2 cut(s) 289, 1198
BpmI CTGGAG 1 cut(s) 1025
Bpu1102I GCTNAGC 1 cut(s) 153
BpuEI CTTGAG 2 cut(s) 254, 353
BpuMI CCSGG 1 cut(s) 571
BsaHI GRCGYC 1 cut(s) 408
BsaJI CCNNGG 2 cut(s) 515, 614
BsaWI WCCGGW 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 745
Bse3DI GCAATG 2 cut(s) 789, 1171
BseBI CCWGG 2 cut(s) 309, 1239
BseDI CCNNGG 2 cut(s) 515, 614
BseGI GGATG 6 cut(s) 117, 259, 397, 868, 892, 1015
BseLI CCNNNNNNNGG 1 cut(s) 745
BseMI GCAATG 2 cut(s) 789, 1171
BseMII CTCAG 4 cut(s) 144, 306, 473, 735
BseRI GAGGAG 1 cut(s) 356
BseXI GCAGC 5 cut(s) 161, 750, 902, 925, 973
BseYI CCCAGC 2 cut(s) 92, 758
BsgI GTGCAG 1 cut(s) 1074
BshFI GGCC 4 cut(s) 275, 520, 574, 1176
BsiHKAI GWGCWC 2 cut(s) 652, 1041
BsiSI CCGG 2 cut(s) 112, 571
BslFI GGGAC 2 cut(s) 141, 925
BslI CCNNNNNNNGG 1 cut(s) 745
BsmAI GTCTC 1 cut(s) 680
BsmBI CGTCTC 1 cut(s) 680
BsmFI GGGAC 2 cut(s) 141, 925
BsnI GGCC 4 cut(s) 275, 520, 574, 1176
Bsp1286I GDGCHC 4 cut(s) 291, 652, 1041, 1246
Bsp143I GATC 7 cut(s) 114, 217, 511, 655, 870, 877, 1105
Bsp1720I GCTNAGC 1 cut(s) 153
Bsp19I CCATGG 1 cut(s) 515
BspACI CCGC 7 cut(s) 59, 389, 440, 479, 583, 721, 830
BspANI GGCC 4 cut(s) 275, 520, 574, 1176
BspCNI CTCAG 4 cut(s) 145, 305, 472, 736
BspHI TCATGA 1 cut(s) 595
BspLI GGNNCC 2 cut(s) 57, 1243
BspPI GGATC 5 cut(s) 122, 225, 506, 650, 865
BsrDI GCAATG 2 cut(s) 789, 1171
BssECI CCNNGG 2 cut(s) 515, 614
BssMI GATC 7 cut(s) 114, 217, 511, 655, 870, 877, 1105
BssNI GRCGYC 1 cut(s) 408
BssT1I CCWWGG 2 cut(s) 515, 614
Bst2UI CCWGG 2 cut(s) 309, 1239
Bst4CI ACNGT 8 cut(s) 137, 536, 684, 908, 946, 1030, 1136, 1211
Bst6I CTCTTC 1 cut(s) 744
BstACI GRCGYC 1 cut(s) 408
BstC8I GCNNGC 4 cut(s) 190, 406, 437, 1047
BstDEI CTNAG 5 cut(s) 153, 292, 428, 459, 744
BstDSI CCRYGG 1 cut(s) 515
BstENI CCTNNNNNAGG 1 cut(s) 743
BstF5I GGATG 6 cut(s) 117, 259, 397, 868, 892, 1015
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 7 cut(s) 117, 220, 514, 658, 873, 880, 1108
BstMAI GTCTC 1 cut(s) 680
BstMBI GATC 7 cut(s) 114, 217, 511, 655, 870, 877, 1105
BstMWI GCNNNNNNNGC 1 cut(s) 1241
BstNI CCWGG 2 cut(s) 309, 1239
BstSCI CCNGG 3 cut(s) 307, 569, 1237
BstSFI CTRYAG 1 cut(s) 942
BstV1I GCAGC 5 cut(s) 161, 750, 902, 925, 973
BstV2I GAAGAC 2 cut(s) 289, 1198
BstX2I RGATCY 3 cut(s) 217, 511, 870
BstXI CCANNNNNNTGG 2 cut(s) 14, 200
BstYI RGATCY 3 cut(s) 217, 511, 870
BsuI GTATCC 1 cut(s) 781
BsuRI GGCC 4 cut(s) 275, 520, 574, 1176
BtgI CCRYGG 1 cut(s) 515
BtsCI GGATG 6 cut(s) 117, 259, 397, 868, 892, 1015
BtsIMutI CAGTG 4 cut(s) 142, 321, 541, 913
Cac8I GCNNGC 4 cut(s) 190, 406, 437, 1047
CciI TCATGA 1 cut(s) 595
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 3 cut(s) 55, 380, 519
CseI GACGC 1 cut(s) 397
CsiI ACCWGGT 1 cut(s) 307
Csp6I GTAC 2 cut(s) 362, 665
CviAII CATG 5 cut(s) 516, 596, 856, 1150, 1225
CviQI GTAC 2 cut(s) 362, 665
DdeI CTNAG 5 cut(s) 153, 292, 428, 459, 744
DpnI GATC 7 cut(s) 116, 219, 513, 657, 872, 879, 1107
DpnII GATC 7 cut(s) 114, 217, 511, 655, 870, 877, 1105
DriI GACNNNNNGTC 2 cut(s) 505, 586
Eam1104I CTCTTC 1 cut(s) 744
Eam1105I GACNNNNNGTC 2 cut(s) 505, 586
EarI CTCTTC 1 cut(s) 744
Ecl136II GAGCTC 1 cut(s) 1039
Eco130I CCWWGG 2 cut(s) 515, 614
Eco24I GRGCYC 3 cut(s) 291, 1041, 1246
Eco32I GATATC 1 cut(s) 528
Eco47I GGWCC 2 cut(s) 55, 380
Eco53kI GAGCTC 1 cut(s) 1039
Eco57I CTGAAG 3 cut(s) 242, 378, 976
EcoICRI GAGCTC 1 cut(s) 1039
EcoNI CCTNNNNNAGG 1 cut(s) 743
EcoO109I RGGNCCY 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 307, 1237
EcoRV GATATC 1 cut(s) 528
EcoT14I CCWWGG 2 cut(s) 515, 614
EcoT22I ATGCAT 1 cut(s) 213
EcoT38I GRGCYC 3 cut(s) 291, 1041, 1246
ErhI CCWWGG 2 cut(s) 515, 614
Esp3I CGTCTC 1 cut(s) 680
FaeI CATG 5 cut(s) 519, 599, 859, 1153, 1228
FalI AAGNNNNNCTT 2 cut(s) 963, 995
FaqI GGGAC 2 cut(s) 141, 925
FatI CATG 5 cut(s) 515, 595, 855, 1149, 1224
FauI CCCGC 3 cut(s) 66, 714, 823
FauNDI CATATG 1 cut(s) 49
FbaI TGATCA 1 cut(s) 1105
Fnu4HI GCNGC 6 cut(s) 150, 440, 764, 891, 939, 987
FokI GGATG 6 cut(s) 104, 266, 404, 875, 899, 1022
FriOI GRGCYC 3 cut(s) 291, 1041, 1246
Fsp4HI GCNGC 6 cut(s) 150, 440, 764, 891, 939, 987
FspBI CTAG 1 cut(s) 962
GlaI GCGC 1 cut(s) 91
GluI GCNGC 6 cut(s) 150, 440, 764, 891, 939, 987
GsaI CCCAGC 2 cut(s) 96, 762
GsuI CTGGAG 1 cut(s) 1025
HaeIII GGCC 4 cut(s) 275, 520, 574, 1176
HapII CCGG 2 cut(s) 112, 571
HgaI GACGC 1 cut(s) 397
HhaI GCGC 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 408
Hin1II CATG 5 cut(s) 519, 599, 859, 1153, 1228
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 2 cut(s) 247, 901
HindII GTYRAC 2 cut(s) 247, 901
HindIII AAGCTT 2 cut(s) 186, 1047
HinfI GANTC 2 cut(s) 468, 506
HpaI GTTAAC 1 cut(s) 247
HpaII CCGG 2 cut(s) 112, 571
HphI GGTGA 3 cut(s) 110, 602, 1148
Hpy166II GTNNAC 3 cut(s) 247, 399, 901
Hpy188I TCNGA 5 cut(s) 222, 511, 532, 745, 995
Hpy188III TCNNGA 6 cut(s) 121, 356, 596, 641, 1082, 1109
Hpy8I GTNNAC 3 cut(s) 247, 399, 901
HpyAV CCTTC 4 cut(s) 139, 481, 853, 1000
HpyCH4III ACNGT 8 cut(s) 137, 536, 684, 908, 946, 1030, 1136, 1211
HpyCH4IV ACGT 4 cut(s) 348, 812, 967, 1074
HpyF10VI GCNNNNNNNGC 1 cut(s) 1241
HpyF3I CTNAG 5 cut(s) 153, 292, 428, 459, 744
HpySE526I ACGT 4 cut(s) 348, 812, 967, 1074
Hsp92I GRCGYC 1 cut(s) 408
Hsp92II CATG 5 cut(s) 519, 599, 859, 1153, 1228
HspAI GCGC 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 1105
KspAI GTTAAC 1 cut(s) 247
Kzo9I GATC 7 cut(s) 114, 217, 511, 655, 870, 877, 1105
LmnI GCTCC 5 cut(s) 82, 358, 643, 1044, 1241
Lsp1109I GCAGC 5 cut(s) 161, 750, 902, 925, 973
LweI GCATC 5 cut(s) 466, 853, 877, 1143, 1222
MabI ACCWGGT 1 cut(s) 307
MaeI CTAG 1 cut(s) 962
MaeII ACGT 4 cut(s) 348, 812, 967, 1074
MaeIII GTNAC 3 cut(s) 17, 31, 608
MalI GATC 7 cut(s) 116, 219, 513, 657, 872, 879, 1107
MboI GATC 7 cut(s) 114, 217, 511, 655, 870, 877, 1105
MflI RGATCY 3 cut(s) 217, 511, 870
MhlI GDGCHC 4 cut(s) 291, 652, 1041, 1246
MluCI AATT 4 cut(s) 929, 1125, 1139, 1216
MlyI GAGTC 1 cut(s) 515
MmeI TCCRAC 1 cut(s) 313
MnlI CCTC 6 cut(s) 46, 117, 135, 377, 739, 1197
Mph1103I ATGCAT 1 cut(s) 213
MseI TTAA 2 cut(s) 246, 704
MslI CAYNNNNRTG 2 cut(s) 135, 326
MspA1I CMGCKG 4 cut(s) 61, 152, 662, 893
MspI CCGG 2 cut(s) 112, 571
MspR9I CCNGG 3 cut(s) 309, 571, 1239
MvaI CCWGG 2 cut(s) 309, 1239
MwoI GCNNNNNNNGC 1 cut(s) 1241
NciI CCSGG 1 cut(s) 571
NcoI CCATGG 1 cut(s) 515
NdeI CATATG 1 cut(s) 49
NdeII GATC 7 cut(s) 114, 217, 511, 655, 870, 877, 1105
NlaIII CATG 5 cut(s) 519, 599, 859, 1153, 1228
NlaIV GGNNCC 2 cut(s) 57, 1243
NmuCI GTSAC 3 cut(s) 17, 31, 608
NsiI ATGCAT 1 cut(s) 213
OliI CACNNNNGTG 1 cut(s) 326
PagI TCATGA 1 cut(s) 595
PfeI GAWTC 1 cut(s) 468
PkrI GCNGC 6 cut(s) 151, 441, 765, 892, 940, 988
PleI GAGTC 1 cut(s) 514
PpsI GAGTC 1 cut(s) 514
PpuMI RGGWCCY 1 cut(s) 55
Psp124BI GAGCTC 1 cut(s) 1041
Psp5II RGGWCCY 1 cut(s) 55
Psp6I CCWGG 2 cut(s) 307, 1237
PspFI CCCAGC 2 cut(s) 92, 758
PspGI CCWGG 2 cut(s) 307, 1237
PspN4I GGNNCC 2 cut(s) 57, 1243
PspPI GGNCC 3 cut(s) 55, 380, 519
PspPPI RGGWCCY 1 cut(s) 55
PsuI RGATCY 3 cut(s) 217, 511, 870
PvuII CAGCTG 3 cut(s) 152, 662, 893
RsaI GTAC 2 cut(s) 363, 666
RsaNI GTAC 2 cut(s) 362, 665
RseI CAYNNNNRTG 2 cut(s) 135, 326
SacI GAGCTC 1 cut(s) 1041
SaqAI TTAA 2 cut(s) 246, 704
SatI GCNGC 6 cut(s) 150, 440, 764, 891, 939, 987
Sau3AI GATC 7 cut(s) 114, 217, 511, 655, 870, 877, 1105
Sau96I GGNCC 3 cut(s) 55, 380, 519
ScaI AGTACT 1 cut(s) 363
SchI GAGTC 1 cut(s) 515
ScrFI CCNGG 3 cut(s) 309, 571, 1239
SduI GDGCHC 4 cut(s) 291, 652, 1041, 1246
SexAI ACCWGGT 1 cut(s) 307
SfaNI GCATC 5 cut(s) 466, 853, 877, 1143, 1222
SfcI CTRYAG 1 cut(s) 942
SinI GGWCC 2 cut(s) 55, 380
SmiMI CAYNNNNRTG 2 cut(s) 135, 326
SmlI CTYRAG 2 cut(s) 269, 368
SmoI CTYRAG 2 cut(s) 269, 368
Sse9I AATT 4 cut(s) 929, 1125, 1139, 1216
SsiI CCGC 7 cut(s) 59, 389, 440, 479, 583, 721, 830
SspMI CTAG 1 cut(s) 962
SstI GAGCTC 1 cut(s) 1041
StyD4I CCNGG 3 cut(s) 307, 569, 1237
StyI CCWWGG 2 cut(s) 515, 614
TaaI ACNGT 8 cut(s) 137, 536, 684, 908, 946, 1030, 1136, 1211
TaiI ACGT 4 cut(s) 351, 815, 970, 1077
TaqI TCGA 1 cut(s) 504
TasI AATT 4 cut(s) 929, 1125, 1139, 1216
TatI WGTACW 2 cut(s) 361, 664
TauI GCSGC 1 cut(s) 442
TfiI GAWTC 1 cut(s) 468
Tru1I TTAA 2 cut(s) 246, 704
Tru9I TTAA 2 cut(s) 246, 704
TscAI CASTG 4 cut(s) 142, 328, 541, 913
TseFI GTSAC 3 cut(s) 17, 31, 608
TseI GCWGC 5 cut(s) 149, 763, 890, 938, 986
Tsp45I GTSAC 3 cut(s) 17, 31, 608
TspDTI ATGAA 5 cut(s) 59, 612, 710, 834, 872
TspGWI ACGGA 3 cut(s) 568, 863, 1210
TspRI CASTG 4 cut(s) 142, 328, 541, 913
VpaK11BI GGWCC 2 cut(s) 55, 380
XagI CCTNNNNNAGG 1 cut(s) 743
XapI RAATTY 3 cut(s) 929, 1139, 1216
XcmI CCANNNNNNNNNTGG 1 cut(s) 1184
XspI CTAG 1 cut(s) 962
ZrmI AGTACT 1 cut(s) 363
Zsp2I ATGCAT 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.