Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003972

Physical Location & Seq

Genomic Coordinates Reverse (-)

19517664 .. 19518365

Gene Structure 702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0138000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGAGCTACAAACCAAGCAACAAATCGAGGATGTAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGATCAAATAAGAATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGTGCCCAACTACAGAGCACATTCACGAGATTTGTCTCCAGCTGAACCAGTATGGACAGGTTGAGGGCAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTATTGGTGGATCCATTGATATTAATTTTGGGTCCACTAGTCCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTGGGGCCACGGGTCGACTGCAGTGTTGACCGGTATTCTTCCTCACCCTTCAACACTAATACTAGTACTTCCTCCTTTGGCACAAAAGGAGGACAAACTTTCATGGAACAGCGAGGGGAGGATCACAAGGAGATTGAAACTCTTCCTCTGTTCCCCATGCACGGTGAGGACGTCCTTGGTGGCCTGAAGACTACTTCTGAGGGAGGTAGCGGCTATGGCTACTATTCCGGTGGCTCAGGAAGTTACAACTGTCACACCCCGAATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010119 GO:0010359 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022898 GO:0023052 GO:0032409 GO:0032412 GO:0032870 GO:0032879 GO:0033993 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051716 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902456 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

233

Amino Acids

25.4

Weight (kDa)

5.73

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 91	2e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17290 AT2G17290 AT4G35310 AT4G35310 AT4G38230 AT4G38230 AT4G38230 AT4G38230
fragaria_vesca	FvH4_2g16880 FvH4_2g16880 FvH4_2g16880 FvH4_2g16880 FvH4_2g16880
malus_domestica	MD05G1140300.v1.1 MD05G1140600.v1.1 MD10G1142300.v1.1
prunus_persica	Prupe.8G180800_v2.0.a1 Prupe.8G180800_v2.0.a1
pyrus_communis	pycom05g13570
rosa_chinensis	RchiOBHm_Chr6g0281011
rosa_laevigata	RLG00000013006
rosa_multiflora	Rmu_co8419211.1_g000001 Rmu_sc0012869.1_g000002
rosa_roxburghii	Rroxscaffold_7G00187390
rosa_rugosa	Rorug06G0137800 Rorug06G0137900 Rorug06G0138000 Rorug06G0138100
rosa_samantha	Rh6AG250100 Rh6BG252400 Rh6CG252800 Rh6DG244500
rosa_wichuraiana	Rw6G021630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	606
AccB7I	CCANNNNNTGG	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	447
AciI	CCGC	1 cut(s)	642
AclWI	GGATC	8 cut(s)	141, 330, 343, 378, 391, 411, 424, 561
AcsI	RAATTY	1 cut(s)	694
AcuI	CTGAAG	1 cut(s)	638
AcyI	GRCGYC	1 cut(s)	603
AfaI	GTAC	2 cut(s)	91, 499
AfiI	CCNNNNNNNGG	3 cut(s)	329, 413, 593
AgeI	ACCGGT	1 cut(s)	462
AgsI	TTSAA	2 cut(s)	484, 569
AhlI	ACTAGT	3 cut(s)	314, 362, 494
AjnI	CCWGG	2 cut(s)	92, 322
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	2 cut(s)	304, 336
AluBI	AGCT	3 cut(s)	7, 199, 410
AluI	AGCT	3 cut(s)	7, 199, 410
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	8 cut(s)	141, 330, 343, 378, 391, 411, 424, 561
Ama87I	CYCGRG	1 cut(s)	261
AoxI	GGCC	3 cut(s)	404, 437, 613
ApeKI	GCWGC	2 cut(s)	50, 293
ApoI	RAATTY	1 cut(s)	694
ArsI	GACNNNNNNTTYG	2 cut(s)	383, 415
AseI	ATTAAT	1 cut(s)	348
AsiGI	ACCGGT	1 cut(s)	462
Asp700I	GAANNNNTTC	2 cut(s)	316, 573
AspS9I	GGNCC	3 cut(s)	357, 404, 437
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	468, 608
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	357
BaeGI	GKGCMC	2 cut(s)	164, 306
BamHI	GGATCC	3 cut(s)	335, 383, 416
BanII	GRGCYC	1 cut(s)	262
BauI	CACGAG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	626
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	62, 280
BccI	CCATC	1 cut(s)	395
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	2 cut(s)	94, 324
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	197
BcuI	ACTAGT	3 cut(s)	314, 362, 494
BfaI	CTAG	3 cut(s)	315, 363, 495
BfmI	CTRYAG	2 cut(s)	168, 451
BisI	GCNGC	3 cut(s)	51, 294, 643
BlsI	GCNGC	3 cut(s)	52, 295, 644
BmcAI	AGTACT	1 cut(s)	499
Bme1390I	CCNGG	3 cut(s)	55, 94, 324
Bme18I	GGWCC	1 cut(s)	357
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	3 cut(s)	357, 404, 437
BmiI	GGNNCC	6 cut(s)	245, 337, 358, 385, 418, 438
BmrFI	CCNGG	3 cut(s)	55, 94, 324
BpiI	GAAGAC	1 cut(s)	626
BpmI	CTGGAG	2 cut(s)	93, 179
Bpu10I	CCTNAGC	1 cut(s)	667
BpuEI	CTTGAG	2 cut(s)	113, 282
BpuMI	CCSGG	1 cut(s)	55
BsaHI	GRCGYC	1 cut(s)	603
BsaJI	CCNNGG	3 cut(s)	306, 440, 607
BsaWI	WCCGGW	2 cut(s)	462, 659
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	3 cut(s)	329, 413, 593
Bse118I	RCCGGY	1 cut(s)	462
Bse1I	ACTGG	2 cut(s)	205, 376
BseBI	CCWGG	2 cut(s)	94, 324
BseDI	CCNNGG	3 cut(s)	306, 440, 607
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	3 cut(s)	329, 413, 593
BseMII	CTCAG	2 cut(s)	621, 681
BseNI	ACTGG	2 cut(s)	205, 376
BseSI	GKGCMC	2 cut(s)	164, 306
BseXI	GCAGC	2 cut(s)	62, 280
BshFI	GGCC	3 cut(s)	406, 439, 615
BshTI	ACCGGT	1 cut(s)	462
BsiHKAI	GWGCWC	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	3 cut(s)	54, 463, 660
BslI	CCNNNNNNNGG	3 cut(s)	329, 413, 593
BsmAI	GTCTC	1 cut(s)	197
BsnI	GGCC	3 cut(s)	406, 439, 615
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	4 cut(s)	164, 177, 262, 306
Bsp143I	GATC	6 cut(s)	112, 133, 335, 383, 416, 553
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	1 cut(s)	642
BspANI	GGCC	3 cut(s)	406, 439, 615
BspCNI	CTCAG	2 cut(s)	622, 680
BspLI	GGNNCC	6 cut(s)	245, 337, 358, 385, 418, 438
BspMAI	CTGCAG	1 cut(s)	455
BspPI	GGATC	8 cut(s)	141, 330, 343, 378, 391, 411, 424, 561
BsrFI	RCCGGY	1 cut(s)	462
BsrI	ACTGG	2 cut(s)	205, 376
BssAI	RCCGGY	1 cut(s)	462
BssECI	CCNNGG	3 cut(s)	306, 440, 607
BssMI	GATC	6 cut(s)	112, 133, 335, 383, 416, 553
BssNI	GRCGYC	1 cut(s)	603
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	2 cut(s)	306, 607
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	2 cut(s)	94, 324
Bst4CI	ACNGT	2 cut(s)	596, 683
Bst6I	CTCTTC	2 cut(s)	272, 579
BstACI	GRCGYC	1 cut(s)	603
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	2 cut(s)	630, 667
BstDSI	CCRYGG	2 cut(s)	306, 440
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	6 cut(s)	115, 136, 338, 386, 419, 556
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	6 cut(s)	112, 133, 335, 383, 416, 553
BstMWI	GCNNNNNNNGC	1 cut(s)	648
BstNI	CCWGG	2 cut(s)	94, 324
BstSCI	CCNGG	3 cut(s)	53, 92, 322
BstSFI	CTRYAG	2 cut(s)	168, 451
BstSLI	GKGCMC	2 cut(s)	164, 306
BstV1I	GCAGC	2 cut(s)	62, 280
BstV2I	GAAGAC	1 cut(s)	626
BstX2I	RGATCY	4 cut(s)	133, 335, 383, 416
BstYI	RGATCY	4 cut(s)	133, 335, 383, 416
BsuRI	GGCC	3 cut(s)	406, 439, 615
BtgI	CCRYGG	2 cut(s)	306, 440
BtsCI	GGATG	1 cut(s)	37
BtsI	GCAGTG	1 cut(s)	460
BtsIMutI	CAGTG	1 cut(s)	460
Cac8I	GCNNGC	1 cut(s)	408
Cfr10I	RCCGGY	1 cut(s)	462
Cfr13I	GGNCC	3 cut(s)	357, 404, 437
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	90, 498
CspAI	ACCGGT	1 cut(s)	462
CviAII	CATG	3 cut(s)	307, 535, 589
CviQI	GTAC	2 cut(s)	90, 498
DdeI	CTNAG	2 cut(s)	630, 667
DpnI	GATC	6 cut(s)	114, 135, 337, 385, 418, 555
DpnII	GATC	6 cut(s)	112, 133, 335, 383, 416, 553
Eam1104I	CTCTTC	2 cut(s)	272, 579
EarI	CTCTTC	2 cut(s)	272, 579
Eco130I	CCWWGG	2 cut(s)	306, 607
Eco24I	GRGCYC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	357
Eco57I	CTGAAG	1 cut(s)	638
Eco88I	CYCGRG	1 cut(s)	261
EcoRII	CCWGG	2 cut(s)	92, 322
EcoT14I	CCWWGG	2 cut(s)	306, 607
EcoT38I	GRGCYC	1 cut(s)	262
ErhI	CCWWGG	2 cut(s)	306, 607
FaeI	CATG	3 cut(s)	310, 538, 592
FaiI	YATR	5 cut(s)	210, 308, 536, 590, 648
FatI	CATG	3 cut(s)	306, 534, 588
FblI	GTMKAC	1 cut(s)	447
Fnu4HI	GCNGC	3 cut(s)	51, 294, 643
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	3 cut(s)	51, 294, 643
FspBI	CTAG	3 cut(s)	315, 363, 495
GluI	GCNGC	3 cut(s)	51, 294, 643
GsuI	CTGGAG	2 cut(s)	93, 179
HaeIII	GGCC	3 cut(s)	406, 439, 615
HapII	CCGG	3 cut(s)	54, 463, 660
Hin1I	GRCGYC	1 cut(s)	603
Hin1II	CATG	3 cut(s)	310, 538, 592
HincII	GTYRAC	2 cut(s)	448, 460
HindII	GTYRAC	2 cut(s)	448, 460
HinfI	GANTC	2 cut(s)	100, 123
HpaII	CCGG	3 cut(s)	54, 463, 660
HphI	GGTGA	2 cut(s)	468, 608
Hpy166II	GTNNAC	3 cut(s)	360, 448, 460
Hpy188I	TCNGA	1 cut(s)	631
Hpy188III	TCNNGA	5 cut(s)	110, 182, 247, 263, 669
Hpy8I	GTNNAC	3 cut(s)	360, 448, 460
HpyAV	CCTTC	1 cut(s)	490
HpyCH4III	ACNGT	2 cut(s)	596, 683
HpyCH4IV	ACGT	2 cut(s)	252, 603
HpyCH4V	TGCA	3 cut(s)	285, 453, 592
HpyF10VI	GCNNNNNNNGC	1 cut(s)	648
HpyF3I	CTNAG	2 cut(s)	630, 667
HpySE526I	ACGT	2 cut(s)	252, 603
Hsp92I	GRCGYC	1 cut(s)	603
Hsp92II	CATG	3 cut(s)	310, 538, 592
Kzo9I	GATC	6 cut(s)	112, 133, 335, 383, 416, 553
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	2 cut(s)	62, 280
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	3 cut(s)	315, 363, 495
MaeII	ACGT	2 cut(s)	252, 603
MaeIII	GTNAC	2 cut(s)	674, 683
MalI	GATC	6 cut(s)	114, 135, 337, 385, 418, 555
MboI	GATC	6 cut(s)	112, 133, 335, 383, 416, 553
MboII	GAAGA	4 cut(s)	289, 462, 566, 631
MflI	RGATCY	4 cut(s)	133, 335, 383, 416
MhlI	GDGCHC	4 cut(s)	164, 177, 262, 306
MluCI	AATT	4 cut(s)	349, 397, 430, 694
MroXI	GAANNNNTTC	2 cut(s)	316, 573
MseI	TTAA	2 cut(s)	156, 348
MspA1I	CMGCKG	2 cut(s)	199, 410
MspI	CCGG	3 cut(s)	54, 463, 660
MspR9I	CCNGG	3 cut(s)	55, 94, 324
MvaI	CCWGG	2 cut(s)	94, 324
MwoI	GCNNNNNNNGC	1 cut(s)	648
NciI	CCSGG	1 cut(s)	55
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	6 cut(s)	112, 133, 335, 383, 416, 553
NlaIII	CATG	3 cut(s)	310, 538, 592
NlaIV	GGNNCC	6 cut(s)	245, 337, 358, 385, 418, 438
NmuCI	GTSAC	1 cut(s)	683
PaeR7I	CTCGAG	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	600
PdmI	GAANNNNTTC	2 cut(s)	316, 573
PfeI	GAWTC	2 cut(s)	100, 123
PflMI	CCANNNNNTGG	1 cut(s)	413
PinAI	ACCGGT	1 cut(s)	462
PkrI	GCNGC	3 cut(s)	52, 295, 644
PshBI	ATTAAT	1 cut(s)	348
Psp6I	CCWGG	2 cut(s)	92, 322
PspGI	CCWGG	2 cut(s)	92, 322
PspN4I	GGNNCC	6 cut(s)	245, 337, 358, 385, 418, 438
PspPI	GGNCC	3 cut(s)	357, 404, 437
PstI	CTGCAG	1 cut(s)	455
PsuI	RGATCY	4 cut(s)	133, 335, 383, 416
PvuII	CAGCTG	2 cut(s)	199, 410
RsaI	GTAC	2 cut(s)	91, 499
RsaNI	GTAC	2 cut(s)	90, 498
SalI	GTCGAC	1 cut(s)	446
SaqAI	TTAA	2 cut(s)	156, 348
SatI	GCNGC	3 cut(s)	51, 294, 643
Sau3AI	GATC	6 cut(s)	112, 133, 335, 383, 416, 553
Sau96I	GGNCC	3 cut(s)	357, 404, 437
ScaI	AGTACT	1 cut(s)	499
ScrFI	CCNGG	3 cut(s)	55, 94, 324
SduI	GDGCHC	4 cut(s)	164, 177, 262, 306
SetI	ASST	9 cut(s)	9, 98, 201, 219, 255, 284, 412, 606, 640
SexAI	ACCWGGT	1 cut(s)	92
SfcI	CTRYAG	2 cut(s)	168, 451
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	357
SlaI	CTCGAG	1 cut(s)	261
SmlI	CTYRAG	3 cut(s)	128, 261, 297
SmoI	CTYRAG	3 cut(s)	128, 261, 297
SpeI	ACTAGT	3 cut(s)	314, 362, 494
Sse9I	AATT	4 cut(s)	349, 397, 430, 694
SsiI	CCGC	1 cut(s)	642
SspMI	CTAG	3 cut(s)	315, 363, 495
StyD4I	CCNGG	3 cut(s)	53, 92, 322
StyI	CCWWGG	2 cut(s)	306, 607
TaaI	ACNGT	2 cut(s)	596, 683
TaiI	ACGT	2 cut(s)	255, 606
TaqI	TCGA	4 cut(s)	27, 262, 390, 447
TasI	AATT	4 cut(s)	349, 397, 430, 694
TatI	WGTACW	1 cut(s)	497
TauI	GCSGC	1 cut(s)	645
TfiI	GAWTC	2 cut(s)	100, 123
Tru1I	TTAA	2 cut(s)	156, 348
Tru9I	TTAA	2 cut(s)	156, 348
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	1 cut(s)	683
TseI	GCWGC	2 cut(s)	50, 293
Tsp45I	GTSAC	1 cut(s)	683
TspDTI	ATGAA	2 cut(s)	290, 523
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	460
Van91I	CCANNNNNTGG	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	357
VspI	ATTAAT	1 cut(s)	348
XapI	RAATTY	1 cut(s)	694
XhoI	CTCGAG	1 cut(s)	261
XmiI	GTMKAC	1 cut(s)	447
XmnI	GAANNNNTTC	2 cut(s)	316, 573
XspI	CTAG	3 cut(s)	315, 363, 495
ZraI	GACGTC	1 cut(s)	604
ZrmI	AGTACT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.