AT2G17290

Calcium-dependent protein kinase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
7516330 .. 7519662
3333 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17290.1

Sequence Viewer

Length: 1635 bp
ATGGGCAATTCATGTCGTGGTTCTTTTAAGGACAAAATCTACGAGGGCAATCATAGTAGGCCCGAGGAGAATTCCAAATCCACCACCACTACTGTTTCCTCTGTTCATTCTCCTACTACAGACCAAGATTTCTCCAAACAGAACACCAATCCAGCTCTTGTGATTCCTGTTAAAGAACCCATTATGCGGCGTAACGTTGACAATCAATCTTACTATGTTCTTGGTCACAAGACTCCTAACATTCGTGATCTTTACACGTTGAGTCGTAAGTTAGGACAAGGACAATTCGGGACAACGTATTTGTGTACTGATATTGCCACAGGTGTTGACTATGCTTGTAAGTCTATATCCAAGAGGAAATTGATATCTAAAGAAGATGTTGAGGATGTTAGGAGGGAGATTCAGATTATGCATCATTTAGCTGGTCACAAGAATATTGTTACTATTAAAGGAGCTTATGAGGATCCTTTGTATGTTCACATTGTGATGGAGCTTTGTGCTGGTGGTGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAAAGCTGCTGAGTTGACCAAGATCATTGTCGGTGTTGTTGAGGCGTGTCATTCTCTTGGTGTTATGCATAGAGATTTAAAGCCTGAGAATTTCTTGTTGGTTAATAAGGATGATGATTTCTCTCTTAAGGCCATTGATTTTGGTCTCTCTGTTTTCTTCAAACCAGGCCAAATATTCAAGGATGTTGTTGGAAGTCCATACTATGTTGCTCCTGAGGTTCTTCTAAAACATTATGGTCCAGAAGCTGATGTGTGGACTGCTGGTGTTATACTCTATATCTTACTAAGTGGTGTCCCGCCTTTCTGGGCAGAAACACAGCAAGGAATATTTGATGCTGTGTTGAAGGGATATATTGACTTTGATACAGACCCGTGGCCTGTCATATCCGACAGTGCTAAAGATCTGATCCGGAAGATGTTATGCTCTAGTCCTTCTGAACGTTTGACTGCTCATGAAGTCTTGCGTCATCCATGGATCTGTGAGAATGGAGTTGCACCGGATAGAGCACTTGACCCGGCTGTTTTGTCTCGTCTAAAACAGTTTTCTGCAATGAATAAATTAAAGAAGATGGCTTTAAAGGTGATAGCTGAGAGCCTCTCAGAAGAAGAGATTGCGGGTTTAAGAGCAATGTTTGAGGCAATGGATACTGATAACAGCGGTGCAATCACTTTTGATGAACTCAAAGCTGGCTTGAGAAGATATGGATCAACCTTGAAAGACACCGAGATCCGAGATCTTATGGAAGCGGCTGATGTGGACAACAGCGGTACAATAGATTACAGCGAGTTTATTGCAGCGACGATCCATCTGAATAAACTAGAGAGAGAAGAGCATCTTGTCTCTGCATTTCAGTACTTTGACAAAGATGGAAGTGGTTACATCACCATTGATGAGCTGCAACAATCTTGCATTGAACATGGGATGACCGATGTTTTTCTTGAAGACATAATCAAAGAAGTAGATCAAGACAACGATGGACGGATTGATTACGAAGAATTTGTTGCGATGATGCAAAAGGGAAATGCTGGTGTAGGGAGAAGAACAATGAAAAATAGTCTAAACATCAGCATGAGAGATGTGTAG

Protein Analysis

544

Amino Acids

61.11

Weight (kDa)

5.41

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 85 - 343 3.7e-75 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 86 - 338 4.3e-23 Protein tyrosine and serine/threonine kinase
EF-hand_1 PF00036 391 - 417 1.1e-06 EF hand domain
EF-hand_7 PF13499 391 - 450 1.1e-13 EF-hand domain pair
EF-hand_6 PF13405 391 - 419 6.6e-06 EF-hand domain
EF-hand_8 PF13833 406 - 450 1e-05 EF-hand domain pair
EF-hand_7 PF13499 460 - 522 3.1e-16 EF-hand domain pair
EF-hand_6 PF13405 463 - 487 4.2e-06 EF-hand domain
EF-hand_1 PF00036 465 - 485 8.5e-06 EF hand domain
EF-hand_1 PF00036 497 - 523 3.1e-08 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 960
AciI CCGC 6 cut(s) 187, 848, 1166, 1209, 1298, 1317
AclI AACGTT 2 cut(s) 195, 991
AclWI GGATC 7 cut(s) 458, 471, 952, 1034, 1264, 1273, 1348
AcsI RAATTY 3 cut(s) 70, 640, 1547
AdeI CACNNNGTG 1 cut(s) 484
AfaI GTAC 3 cut(s) 307, 1321, 1406
AfiI CCNNNNNNNGG 1 cut(s) 186
AflII CTTAAG 1 cut(s) 677
AflIII ACRYGT 1 cut(s) 255
AgsI TTSAA 6 cut(s) 712, 730, 895, 1267, 1466, 1493
AjnI CCWGG 1 cut(s) 715
AjuI GAANNNNNNNTTGG 2 cut(s) 632, 664
AluBI AGCT 9 cut(s) 155, 422, 455, 493, 557, 797, 1139, 1238, 1447
AluI AGCT 9 cut(s) 155, 422, 455, 493, 557, 797, 1139, 1238, 1447
Alw21I GWGCWC 1 cut(s) 1060
Alw26I GTCTC 3 cut(s) 701, 1083, 1396
AlwI GGATC 7 cut(s) 458, 471, 952, 1034, 1264, 1273, 1348
AlwNI CAGNNNCTG 1 cut(s) 797
Ama87I CYCGRG 1 cut(s) 62
Aor13HI TCCGGA 1 cut(s) 960
AoxI GGCC 4 cut(s) 59, 681, 718, 926
ApeKI GCWGC 3 cut(s) 557, 1346, 1447
ApoI RAATTY 3 cut(s) 70, 640, 1547
ArsI GACNNNNNNTTYG 2 cut(s) 283, 315
AspS9I GGNCC 2 cut(s) 60, 788
AsuC2I CCSGG 1 cut(s) 1067
AsuHPI GGTGA 3 cut(s) 518, 1144, 1426
AvaI CYCGRG 1 cut(s) 62
AvaII GGWCC 1 cut(s) 788
AxyI CCTNAGG 1 cut(s) 765
BamHI GGATCC 1 cut(s) 463
BbsI GAAGAC 1 cut(s) 1500
Bbv12I GWGCWC 1 cut(s) 1060
BbvI GCAGC 3 cut(s) 544, 1358, 1434
BccI CCATC 5 cut(s) 481, 1114, 1365, 1412, 1520
BcgI CGANNNNNNTGC 2 cut(s) 1325, 1359
BciT130I CCWGG 1 cut(s) 717
BciVI GTATCC 1 cut(s) 1189
BcnI CCSGG 1 cut(s) 1067
BcoDI GTCTC 3 cut(s) 701, 1083, 1396
BfaI CTAG 2 cut(s) 978, 1370
BfmI CTRYAG 1 cut(s) 117
BfrI CTTAAG 1 cut(s) 677
BfuI GTATCC 1 cut(s) 1189
BglII AGATCT 2 cut(s) 952, 1285
BisI GCNGC 5 cut(s) 188, 558, 1299, 1347, 1448
BlsI GCNGC 5 cut(s) 189, 559, 1300, 1348, 1449
BmcAI AGTACT 1 cut(s) 1406
Bme1390I CCNGG 2 cut(s) 717, 1067
Bme18I GGWCC 1 cut(s) 788
BmeT110I CYCGRG 1 cut(s) 62
BmgT120I GGNCC 2 cut(s) 60, 788
BmiI GGNNCC 1 cut(s) 465
BmrFI CCNGG 2 cut(s) 717, 1067
BmsI GCATC 4 cut(s) 421, 874, 1393, 1551
BpiI GAAGAC 1 cut(s) 1500
BplI GAGNNNNNCTC 2 cut(s) 1133, 1165
BpuEI CTTGAG 1 cut(s) 1264
BpuMI CCSGG 1 cut(s) 1067
BsaBI GATNNNNATC 1 cut(s) 1255
BsaI GGTCTC 1 cut(s) 701
BsaJI CCNNGG 3 cut(s) 63, 923, 1022
BsaWI WCCGGW 2 cut(s) 960, 1048
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse21I CCTNAGG 1 cut(s) 765
Bse3DI GCAATG 3 cut(s) 1107, 1185, 1197
Bse8I GATNNNNATC 1 cut(s) 1255
BseAI TCCGGA 1 cut(s) 960
BseBI CCWGG 1 cut(s) 717
BseDI CCNNGG 3 cut(s) 63, 923, 1022
BseGI GGATG 5 cut(s) 391, 667, 739, 1018, 1479
BseJI GATNNNNATC 1 cut(s) 1255
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMI GCAATG 3 cut(s) 1107, 1185, 1197
BseMII CTCAG 5 cut(s) 552, 627, 756, 1131, 1164
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 3 cut(s) 544, 1358, 1434
BshFI GGCC 4 cut(s) 61, 683, 720, 928
BsiHKAI GWGCWC 1 cut(s) 1060
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 3 cut(s) 961, 1049, 1067
BslFI GGGAC 2 cut(s) 304, 830
BslI CCNNNNNNNGG 1 cut(s) 186
BsmAI GTCTC 3 cut(s) 701, 1083, 1396
BsmFI GGGAC 2 cut(s) 304, 830
BsnI GGCC 4 cut(s) 61, 683, 720, 928
Bso31I GGTCTC 1 cut(s) 701
BsoBI CYCGRG 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 1060
Bsp13I TCCGGA 1 cut(s) 960
Bsp19I CCATGG 1 cut(s) 1022
BspACI CCGC 6 cut(s) 187, 848, 1166, 1209, 1298, 1317
BspANI GGCC 4 cut(s) 61, 683, 720, 928
BspCNI CTCAG 5 cut(s) 553, 628, 757, 1132, 1163
BspEI TCCGGA 1 cut(s) 960
BspHI TCATGA 1 cut(s) 1003
BspLI GGNNCC 1 cut(s) 465
BspPI GGATC 7 cut(s) 458, 471, 952, 1034, 1264, 1273, 1348
BspQI GCTCTTC 1 cut(s) 1374
BspTI CTTAAG 1 cut(s) 677
BspTNI GGTCTC 1 cut(s) 701
BsrDI GCAATG 3 cut(s) 1107, 1185, 1197
BssECI CCNNGG 3 cut(s) 63, 923, 1022
BssT1I CCWWGG 1 cut(s) 1022
Bst2UI CCWGG 1 cut(s) 717
Bst4CI ACNGT 3 cut(s) 94, 944, 1092
Bst6I CTCTTC 2 cut(s) 1152, 1374
BstAFI CTTAAG 1 cut(s) 677
BstC8I GCNNGC 1 cut(s) 1240
BstDEI CTNAG 6 cut(s) 561, 636, 765, 836, 1140, 1150
BstDSI CCRYGG 2 cut(s) 923, 1022
BstF5I GGATG 5 cut(s) 391, 667, 739, 1018, 1479
BstMAI GTCTC 3 cut(s) 701, 1083, 1396
BstNI CCWGG 1 cut(s) 717
BstSCI CCNGG 2 cut(s) 715, 1065
BstSFI CTRYAG 1 cut(s) 117
BstV1I GCAGC 3 cut(s) 544, 1358, 1434
BstV2I GAAGAC 1 cut(s) 1500
BstX2I RGATCY 5 cut(s) 463, 952, 1026, 1278, 1285
BstYI RGATCY 5 cut(s) 463, 952, 1026, 1278, 1285
Bsu36I CCTNAGG 1 cut(s) 765
BsuI GTATCC 1 cut(s) 1189
BsuRI GGCC 4 cut(s) 61, 683, 720, 928
BtgI CCRYGG 2 cut(s) 923, 1022
BtgZI GCGATG 1 cut(s) 1571
BtsCI GGATG 5 cut(s) 391, 667, 739, 1018, 1479
BtsIMutI CAGTG 1 cut(s) 949
Cac8I GCNNGC 1 cut(s) 1240
CaiI CAGNNNCTG 1 cut(s) 797
CciI TCATGA 1 cut(s) 1003
Cfr13I GGNCC 2 cut(s) 60, 788
CseI GACGC 1 cut(s) 1004
Csp6I GTAC 3 cut(s) 306, 1320, 1405
CspCI CAANNNNNGTGG 2 cut(s) 307, 342
CviAII CATG 5 cut(s) 12, 1004, 1023, 1469, 1621
CviQI GTAC 3 cut(s) 306, 1320, 1405
DdeI CTNAG 6 cut(s) 561, 636, 765, 836, 1140, 1150
DraI TTTAAA 2 cut(s) 630, 1128
DraIII CACNNNGTG 1 cut(s) 484
Eam1104I CTCTTC 2 cut(s) 1152, 1374
EarI CTCTTC 2 cut(s) 1152, 1374
Eco130I CCWWGG 1 cut(s) 1022
Eco31I GGTCTC 1 cut(s) 701
Eco32I GATATC 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 788
Eco81I CCTNAGG 1 cut(s) 765
Eco88I CYCGRG 1 cut(s) 62
EcoRI GAATTC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 715
EcoRV GATATC 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 1022
EcoT22I ATGCAT 2 cut(s) 414, 621
ErhI CCWWGG 1 cut(s) 1022
FaeI CATG 5 cut(s) 15, 1007, 1026, 1472, 1624
FalI AAGNNNNNCTT 2 cut(s) 1371, 1403
FaqI GGGAC 2 cut(s) 304, 830
FatI CATG 5 cut(s) 11, 1003, 1022, 1468, 1620
FauI CCCGC 2 cut(s) 855, 1159
Fnu4HI GCNGC 5 cut(s) 188, 558, 1299, 1347, 1448
FokI GGATG 5 cut(s) 398, 674, 746, 1005, 1486
Fsp4HI GCNGC 5 cut(s) 188, 558, 1299, 1347, 1448
FspBI CTAG 2 cut(s) 978, 1370
GluI GCNGC 5 cut(s) 188, 558, 1299, 1347, 1448
HaeIII GGCC 4 cut(s) 61, 683, 720, 928
HapII CCGG 3 cut(s) 961, 1049, 1067
HgaI GACGC 1 cut(s) 1004
Hin1II CATG 5 cut(s) 15, 1007, 1026, 1472, 1624
HincII GTYRAC 3 cut(s) 199, 328, 567
HindII GTYRAC 3 cut(s) 199, 328, 567
HinfI GANTC 4 cut(s) 163, 232, 262, 400
HpaII CCGG 3 cut(s) 961, 1049, 1067
HphI GGTGA 3 cut(s) 518, 1144, 1426
Hpy166II GTNNAC 7 cut(s) 199, 306, 328, 478, 567, 807, 1309
Hpy188I TCNGA 7 cut(s) 405, 940, 957, 988, 1153, 1283, 1362
Hpy188III TCNNGA 8 cut(s) 245, 289, 764, 791, 961, 1004, 1490, 1517
Hpy8I GTNNAC 7 cut(s) 199, 306, 328, 478, 567, 807, 1309
Hpy99I CGWCG 1 cut(s) 1354
HpyAV CCTTC 2 cut(s) 889, 993
HpyCH4III ACNGT 3 cut(s) 94, 944, 1092
HpyCH4IV ACGT 4 cut(s) 195, 257, 296, 991
HpyF3I CTNAG 6 cut(s) 561, 636, 765, 836, 1140, 1150
HpySE526I ACGT 4 cut(s) 195, 257, 296, 991
Hsp92II CATG 5 cut(s) 15, 1007, 1026, 1472, 1624
Kpn2I TCCGGA 1 cut(s) 960
LguI GCTCTTC 1 cut(s) 1374
LmnI GCTCC 3 cut(s) 452, 490, 766
Lsp1109I GCAGC 3 cut(s) 544, 1358, 1434
LweI GCATC 4 cut(s) 421, 874, 1393, 1551
MaeI CTAG 2 cut(s) 978, 1370
MaeII ACGT 4 cut(s) 195, 257, 296, 991
MaeIII GTNAC 5 cut(s) 191, 224, 425, 439, 1427
MflI RGATCY 5 cut(s) 463, 952, 1026, 1278, 1285
MhlI GDGCHC 1 cut(s) 1060
MluCI AATT 7 cut(s) 7, 70, 284, 359, 640, 1109, 1547
MlyI GAGTC 2 cut(s) 226, 271
MmeI TCCRAC 2 cut(s) 721, 963
Mph1103I ATGCAT 2 cut(s) 414, 621
MroI TCCGGA 1 cut(s) 960
MseI TTAA 9 cut(s) 27, 171, 447, 629, 654, 678, 1112, 1127, 1172
MslI CAYNNNNRTG 2 cut(s) 485, 1619
MspA1I CMGCKG 2 cut(s) 1209, 1317
MspCI CTTAAG 1 cut(s) 677
MspI CCGG 3 cut(s) 961, 1049, 1067
MspR9I CCNGG 2 cut(s) 717, 1067
MvaI CCWGG 1 cut(s) 717
NciI CCSGG 1 cut(s) 1067
NcoI CCATGG 1 cut(s) 1022
NlaIII CATG 5 cut(s) 15, 1007, 1026, 1472, 1624
NlaIV GGNNCC 1 cut(s) 465
NmuCI GTSAC 2 cut(s) 224, 425
NsiI ATGCAT 2 cut(s) 414, 621
PagI TCATGA 1 cut(s) 1003
PciSI GCTCTTC 1 cut(s) 1374
PfeI GAWTC 2 cut(s) 163, 400
PkrI GCNGC 5 cut(s) 189, 559, 1300, 1348, 1449
PleI GAGTC 2 cut(s) 226, 270
PpsI GAGTC 2 cut(s) 226, 270
Psp1406I AACGTT 2 cut(s) 195, 991
Psp6I CCWGG 1 cut(s) 715
PspGI CCWGG 1 cut(s) 715
PspN4I GGNNCC 1 cut(s) 465
PspPI GGNCC 2 cut(s) 60, 788
PstNI CAGNNNCTG 1 cut(s) 797
PsuI RGATCY 5 cut(s) 463, 952, 1026, 1278, 1285
RsaI GTAC 3 cut(s) 307, 1321, 1406
RsaNI GTAC 3 cut(s) 306, 1320, 1405
RseI CAYNNNNRTG 2 cut(s) 485, 1619
SapI GCTCTTC 1 cut(s) 1374
SaqAI TTAA 9 cut(s) 27, 171, 447, 629, 654, 678, 1112, 1127, 1172
SatI GCNGC 5 cut(s) 188, 558, 1299, 1347, 1448
Sau96I GGNCC 2 cut(s) 60, 788
ScaI AGTACT 1 cut(s) 1406
SchI GAGTC 2 cut(s) 226, 271
ScrFI CCNGG 2 cut(s) 717, 1067
SduI GDGCHC 1 cut(s) 1060
SfaNI GCATC 4 cut(s) 421, 874, 1393, 1551
SfcI CTRYAG 1 cut(s) 117
SinI GGWCC 1 cut(s) 788
SmiMI CAYNNNNRTG 2 cut(s) 485, 1619
SmlI CTYRAG 2 cut(s) 677, 1243
SmoI CTYRAG 2 cut(s) 677, 1243
Sse9I AATT 7 cut(s) 7, 70, 284, 359, 640, 1109, 1547
SsiI CCGC 6 cut(s) 187, 848, 1166, 1209, 1298, 1317
SspI AATATT 3 cut(s) 436, 726, 879
SspMI CTAG 2 cut(s) 978, 1370
StyD4I CCNGG 2 cut(s) 715, 1065
StyI CCWWGG 1 cut(s) 1022
TaaI ACNGT 3 cut(s) 94, 944, 1092
TaiI ACGT 4 cut(s) 198, 260, 299, 994
TaqII GACCGA 1 cut(s) 1493
TasI AATT 7 cut(s) 7, 70, 284, 359, 640, 1109, 1547
TatI WGTACW 2 cut(s) 305, 1404
TauI GCSGC 2 cut(s) 190, 1301
TfiI GAWTC 2 cut(s) 163, 400
Tru1I TTAA 9 cut(s) 27, 171, 447, 629, 654, 678, 1112, 1127, 1172
Tru9I TTAA 9 cut(s) 27, 171, 447, 629, 654, 678, 1112, 1127, 1172
TscAI CASTG 1 cut(s) 949
TseFI GTSAC 2 cut(s) 224, 425
TseI GCWGC 3 cut(s) 557, 1346, 1447
Tsp45I GTSAC 2 cut(s) 224, 425
TspDTI ATGAA 6 cut(s) 95, 518, 1020, 1118, 1242, 1613
TspGWI ACGGA 1 cut(s) 1546
TspRI CASTG 1 cut(s) 949
Vha464I CTTAAG 1 cut(s) 677
VpaK11BI GGWCC 1 cut(s) 788
XapI RAATTY 3 cut(s) 70, 640, 1547
XspI CTAG 2 cut(s) 978, 1370
ZrmI AGTACT 1 cut(s) 1406
Zsp2I ATGCAT 2 cut(s) 414, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.