Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003972

Physical Location & Seq

Genomic Coordinates Forward (+)

42310200 .. 42315619

Gene Structure 5420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG252800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGCAACACATGCCGTGGATCTTCCAGGGGCAAATTTTTCCTTGGCGCCAATCAGCCCGAAGAACAATCCACTGCTTCTAATACCAAGCGTAGCACCCCTACTGACCTTTCCATTTCCGATACCTCCTCAAAATCTCAAGAACTAACCAAAGGAAGCCCCAGCCCCAAACCCAAAGACAAGAGTAACAACAATAATCTACCCCTCAGTAGTCCTAGAAAAGACAACGCCATGAGGAGAGGCCATGAGAACCAAACTTACTATGTTTTGGGCCATAAGACTGCCAACATTCGTGATCTTTATACTTTGGGTCAGAAGTTAGGACAGGGACAATTTGGGACTACTTATTTGTGCACTGAGATTTCCACCGGCTCTCAGTATGCGTGTAAGTCTATCTCCAAGAGGAAGTTGATCTCAAAGGAGGATGTGGATGACGTTAGGAGGGAGATTCAGATAATGCACCATTTGGCTGGTCACAAGAACATTGTGACTATCAAAGGTGCATATGAGGATCCGCTGTATGTTCATATTGTAATGGAGCTTTGCGCTGGGGGTGAGTTGTTTGACCGGATCATCCAGAGGGGACATTACAGTGAGAGGAAGGCAGCTGAGCTGACAAAGATTATTGTTGGGGTTGTTGAAGCTTGCCATTCACTTGGAGTTATGCATAGAGATCTGAAGCCCGAAAACTTCTTGTTGGTTAACAAGGATGATGATTTCTCACTCAAGGCCATTGATTTTGGGCTCTCAGTCTTCTTCAAACCAGGTCAAGTTTTCACTGATGTGGTTGGAAGCCCATACTACGTCGCTCCTGAAGTACTCCTCAAGCATTATGGACCAGAAGCGGATGTGTGGACTGCTGGCGTCATACTATATATTTTGCTAAGCGGCGTGCCGCCATTTTGGGCAGGTCAGGGTAGTTTTCTAGTGAGAGGAAAATATATCATCTTGTGCTATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010119 GO:0010359 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022898 GO:0023052 GO:0032409 GO:0032412 GO:0032870 GO:0032879 GO:0033993 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051716 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902456 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

320

Amino Acids

35.59

Weight (kDa)

8.84

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	101 - 306	6.6e-63	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	102 - 301	9e-22	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17290 AT2G17290 AT4G35310 AT4G35310 AT4G38230 AT4G38230 AT4G38230 AT4G38230
fragaria_vesca	FvH4_2g16880 FvH4_2g16880 FvH4_2g16880 FvH4_2g16880 FvH4_2g16880
malus_domestica	MD05G1140300.v1.1 MD05G1140600.v1.1 MD10G1142300.v1.1
prunus_persica	Prupe.8G180800_v2.0.a1 Prupe.8G180800_v2.0.a1
pyrus_communis	pycom05g13570
rosa_chinensis	RchiOBHm_Chr6g0281011
rosa_laevigata	RLG00000013006
rosa_multiflora	Rmu_co8419211.1_g000001 Rmu_sc0012869.1_g000002
rosa_roxburghii	Rroxscaffold_7G00187390
rosa_rugosa	Rorug06G0137800 Rorug06G0137900 Rorug06G0138000 Rorug06G0138100
rosa_samantha	Rh6AG250100 Rh6BG252400 Rh6CG252800 Rh6DG244500
rosa_wichuraiana	Rw6G021630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	899
AccB1I	GGYRCC	1 cut(s)	47
AciI	CCGC	4 cut(s)	515, 845, 888, 896
AclWI	GGATC	4 cut(s)	28, 506, 519, 578
AcsI	RAATTY	1 cut(s)	35
AcuI	CTGAAG	2 cut(s)	698, 834
AcyI	GRCGYC	2 cut(s)	48, 864
AfaI	GTAC	1 cut(s)	819
AgsI	TTSAA	2 cut(s)	641, 760
AjnI	CCWGG	2 cut(s)	26, 763
AleI	CACNNNNGTG	1 cut(s)	782
AluBI	AGCT	4 cut(s)	541, 608, 613, 644
AluI	AGCT	4 cut(s)	541, 608, 613, 644
Alw21I	GWGCWC	1 cut(s)	356
Alw44I	GTGCAC	1 cut(s)	352
AlwI	GGATC	4 cut(s)	28, 506, 519, 578
AoxI	GGCC	3 cut(s)	241, 271, 729
ApaLI	GTGCAC	1 cut(s)	352
ApeKI	GCWGC	1 cut(s)	605
ApoI	RAATTY	1 cut(s)	35
ArsI	GACNNNNNNTTYG	2 cut(s)	331, 363
AspLEI	GCGC	2 cut(s)	50, 548
AspS9I	GGNCC	2 cut(s)	271, 836
AsuHPI	GGTGA	1 cut(s)	566
AvaII	GGWCC	1 cut(s)	836
BaeGI	GKGCMC	1 cut(s)	356
BamHI	GGATCC	1 cut(s)	511
BanI	GGYRCC	1 cut(s)	47
BanII	GRGCYC	1 cut(s)	747
BbsI	GAAGAC	1 cut(s)	745
Bbv12I	GWGCWC	1 cut(s)	356
BbvI	GCAGC	1 cut(s)	617
BciT130I	CCWGG	2 cut(s)	28, 765
BfaI	CTAG	2 cut(s)	216, 926
BfoI	RGCGCY	1 cut(s)	51
BfuAI	ACCTGC	1 cut(s)	899
BglII	AGATCT	1 cut(s)	673
BisI	GCNGC	3 cut(s)	606, 889, 896
BlpI	GCTNAGC	2 cut(s)	609, 884
BlsI	GCNGC	3 cut(s)	607, 890, 897
BmcAI	AGTACT	1 cut(s)	819
Bme1390I	CCNGG	2 cut(s)	28, 765
Bme18I	GGWCC	1 cut(s)	836
BmgT120I	GGNCC	2 cut(s)	271, 836
BmiI	GGNNCC	2 cut(s)	49, 513
BmrFI	CCNGG	2 cut(s)	28, 765
BpiI	GAAGAC	1 cut(s)	745
Bpu1102I	GCTNAGC	2 cut(s)	609, 884
BpuEI	CTTGAG	3 cut(s)	123, 710, 809
BsaHI	GRCGYC	2 cut(s)	48, 864
BsaJI	CCNNGG	3 cut(s)	16, 27, 43
BsaWI	WCCGGW	1 cut(s)	567
Bse118I	RCCGGY	1 cut(s)	368
BseBI	CCWGG	2 cut(s)	28, 765
BseDI	CCNNGG	3 cut(s)	16, 27, 43
BseGI	GGATG	5 cut(s)	430, 436, 573, 715, 853
BseMII	CTCAG	5 cut(s)	220, 348, 389, 600, 762
BseRI	GAGGAG	3 cut(s)	118, 250, 812
BseSI	GKGCMC	1 cut(s)	356
BseXI	GCAGC	1 cut(s)	617
BseYI	CCCAGC	2 cut(s)	161, 548
BshFI	GGCC	3 cut(s)	243, 273, 731
BshNI	GGYRCC	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	356
BsiSI	CCGG	2 cut(s)	369, 568
BslFI	GGGAC	3 cut(s)	342, 352, 597
BsmFI	GGGAC	3 cut(s)	342, 352, 597
BsnI	GGCC	3 cut(s)	243, 273, 731
Bsp1286I	GDGCHC	2 cut(s)	356, 747
Bsp143I	GATC	6 cut(s)	20, 295, 411, 511, 570, 673
Bsp1720I	GCTNAGC	2 cut(s)	609, 884
BspACI	CCGC	4 cut(s)	515, 845, 888, 896
BspANI	GGCC	3 cut(s)	243, 273, 731
BspCNI	CTCAG	5 cut(s)	219, 349, 388, 601, 761
BspLI	GGNNCC	2 cut(s)	49, 513
BspMI	ACCTGC	1 cut(s)	899
BspPI	GGATC	4 cut(s)	28, 506, 519, 578
BspT107I	GGYRCC	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	368
BssAI	RCCGGY	1 cut(s)	368
BssECI	CCNNGG	3 cut(s)	16, 27, 43
BssMI	GATC	6 cut(s)	20, 295, 411, 511, 570, 673
BssNI	GRCGYC	2 cut(s)	48, 864
BssT1I	CCWWGG	1 cut(s)	43
Bst2UI	CCWGG	2 cut(s)	28, 765
Bst4CI	ACNGT	1 cut(s)	593
BstACI	GRCGYC	2 cut(s)	48, 864
BstAPI	GCANNNNNTGC	1 cut(s)	12
BstC8I	GCNNGC	3 cut(s)	646, 862, 893
BstDEI	CTNAG	6 cut(s)	206, 357, 375, 609, 748, 884
BstDSI	CCRYGG	1 cut(s)	16
BstF5I	GGATG	5 cut(s)	430, 436, 573, 715, 853
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	2 cut(s)	50, 548
BstKTI	GATC	6 cut(s)	23, 298, 414, 514, 573, 676
BstMBI	GATC	6 cut(s)	20, 295, 411, 511, 570, 673
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstNI	CCWGG	2 cut(s)	28, 765
BstNSI	RCATGY	1 cut(s)	15
BstSCI	CCNGG	2 cut(s)	26, 763
BstSLI	GKGCMC	1 cut(s)	356
BstV1I	GCAGC	1 cut(s)	617
BstV2I	GAAGAC	1 cut(s)	745
BstX2I	RGATCY	3 cut(s)	20, 511, 673
BstXI	CCANNNNNNTGG	2 cut(s)	470, 656
BstYI	RGATCY	3 cut(s)	20, 511, 673
BsuRI	GGCC	3 cut(s)	243, 273, 731
BtgI	CCRYGG	1 cut(s)	16
BtsCI	GGATG	5 cut(s)	430, 436, 573, 715, 853
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	4 cut(s)	72, 354, 598, 777
BveI	ACCTGC	1 cut(s)	899
Cac8I	GCNNGC	3 cut(s)	646, 862, 893
CfoI	GCGC	2 cut(s)	50, 548
Cfr10I	RCCGGY	1 cut(s)	368
Cfr13I	GGNCC	2 cut(s)	271, 836
CseI	GACGC	1 cut(s)	853
CsiI	ACCWGGT	1 cut(s)	763
Csp6I	GTAC	1 cut(s)	818
CviAII	CATG	3 cut(s)	12, 232, 245
CviQI	GTAC	1 cut(s)	818
DdeI	CTNAG	6 cut(s)	206, 357, 375, 609, 748, 884
DinI	GGCGCC	1 cut(s)	49
DpnI	GATC	6 cut(s)	22, 297, 413, 513, 572, 675
DpnII	GATC	6 cut(s)	20, 295, 411, 511, 570, 673
Eco130I	CCWWGG	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	747
Eco47I	GGWCC	1 cut(s)	836
Eco57I	CTGAAG	2 cut(s)	698, 834
EcoRII	CCWGG	2 cut(s)	26, 763
EcoT14I	CCWWGG	1 cut(s)	43
EcoT22I	ATGCAT	1 cut(s)	669
EcoT38I	GRGCYC	1 cut(s)	747
EgeI	GGCGCC	1 cut(s)	49
EheI	GGCGCC	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	43
FaeI	CATG	3 cut(s)	15, 235, 248
FaqI	GGGAC	3 cut(s)	342, 352, 597
FatI	CATG	3 cut(s)	11, 231, 244
FauNDI	CATATG	1 cut(s)	505
Fnu4HI	GCNGC	3 cut(s)	606, 889, 896
FokI	GGATG	5 cut(s)	437, 443, 560, 722, 860
FriOI	GRGCYC	1 cut(s)	747
Fsp4HI	GCNGC	3 cut(s)	606, 889, 896
FspBI	CTAG	2 cut(s)	216, 926
GlaI	GCGC	2 cut(s)	49, 547
GluI	GCNGC	3 cut(s)	606, 889, 896
GsaI	CCCAGC	2 cut(s)	165, 552
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	3 cut(s)	243, 273, 731
HapII	CCGG	2 cut(s)	369, 568
HgaI	GACGC	1 cut(s)	853
HhaI	GCGC	2 cut(s)	50, 548
Hin1I	GRCGYC	2 cut(s)	48, 864
Hin1II	CATG	3 cut(s)	15, 235, 248
Hin6I	GCGC	2 cut(s)	48, 546
HinP1I	GCGC	2 cut(s)	48, 546
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HindIII	AAGCTT	1 cut(s)	642
HinfI	GANTC	1 cut(s)	448
HpaI	GTTAAC	1 cut(s)	703
HpaII	CCGG	2 cut(s)	369, 568
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	3 cut(s)	354, 703, 855
Hpy188I	TCNGA	4 cut(s)	121, 315, 453, 678
Hpy188III	TCNNGA	4 cut(s)	140, 293, 577, 812
Hpy8I	GTNNAC	3 cut(s)	354, 703, 855
Hpy99I	CGWCG	1 cut(s)	809
HpyAV	CCTTC	1 cut(s)	595
HpyCH4III	ACNGT	1 cut(s)	593
HpyCH4IV	ACGT	2 cut(s)	435, 804
HpyCH4V	TGCA	4 cut(s)	354, 460, 503, 667
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpyF3I	CTNAG	6 cut(s)	206, 357, 375, 609, 748, 884
HpySE526I	ACGT	2 cut(s)	435, 804
Hsp92I	GRCGYC	2 cut(s)	48, 864
Hsp92II	CATG	3 cut(s)	15, 235, 248
HspAI	GCGC	2 cut(s)	48, 546
KasI	GGCGCC	1 cut(s)	47
KspAI	GTTAAC	1 cut(s)	703
Kzo9I	GATC	6 cut(s)	20, 295, 411, 511, 570, 673
LmnI	GCTCC	2 cut(s)	538, 814
Lsp1109I	GCAGC	1 cut(s)	617
MabI	ACCWGGT	1 cut(s)	763
MaeI	CTAG	2 cut(s)	216, 926
MaeII	ACGT	2 cut(s)	435, 804
MaeIII	GTNAC	3 cut(s)	185, 473, 487
MalI	GATC	6 cut(s)	22, 297, 413, 513, 572, 675
MboI	GATC	6 cut(s)	20, 295, 411, 511, 570, 673
MboII	GAAGA	4 cut(s)	15, 74, 745, 748
MflI	RGATCY	3 cut(s)	20, 511, 673
MhlI	GDGCHC	2 cut(s)	356, 747
MluCI	AATT	2 cut(s)	35, 332
Mly113I	GGCGCC	1 cut(s)	48
MmeI	TCCRAC	1 cut(s)	769
Mph1103I	ATGCAT	1 cut(s)	669
MseI	TTAA	1 cut(s)	702
MslI	CAYNNNNRTG	2 cut(s)	591, 782
MspA1I	CMGCKG	2 cut(s)	517, 608
MspI	CCGG	2 cut(s)	369, 568
MspR9I	CCNGG	2 cut(s)	28, 765
MvaI	CCWGG	2 cut(s)	28, 765
MwoI	GCNNNNNNNGC	1 cut(s)	12
NarI	GGCGCC	1 cut(s)	48
NdeI	CATATG	1 cut(s)	505
NdeII	GATC	6 cut(s)	20, 295, 411, 511, 570, 673
NlaIII	CATG	3 cut(s)	15, 235, 248
NlaIV	GGNNCC	2 cut(s)	49, 513
NmuCI	GTSAC	2 cut(s)	473, 487
NsiI	ATGCAT	1 cut(s)	669
NspI	RCATGY	1 cut(s)	15
OliI	CACNNNNGTG	1 cut(s)	782
PfeI	GAWTC	1 cut(s)	448
PkrI	GCNGC	3 cut(s)	607, 890, 897
PluTI	GGCGCC	1 cut(s)	51
Psp6I	CCWGG	2 cut(s)	26, 763
PspFI	CCCAGC	2 cut(s)	161, 548
PspGI	CCWGG	2 cut(s)	26, 763
PspN4I	GGNNCC	2 cut(s)	49, 513
PspPI	GGNCC	2 cut(s)	271, 836
PsrI	GAACNNNNNNTAC	2 cut(s)	242, 274
PsuI	RGATCY	3 cut(s)	20, 511, 673
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	1 cut(s)	819
RsaNI	GTAC	1 cut(s)	818
RseI	CAYNNNNRTG	2 cut(s)	591, 782
SaqAI	TTAA	1 cut(s)	702
SatI	GCNGC	3 cut(s)	606, 889, 896
Sau3AI	GATC	6 cut(s)	20, 295, 411, 511, 570, 673
Sau96I	GGNCC	2 cut(s)	271, 836
ScaI	AGTACT	1 cut(s)	819
ScrFI	CCNGG	2 cut(s)	28, 765
SduI	GDGCHC	2 cut(s)	356, 747
SexAI	ACCWGGT	1 cut(s)	763
SfoI	GGCGCC	1 cut(s)	49
SinI	GGWCC	1 cut(s)	836
SmiMI	CAYNNNNRTG	2 cut(s)	591, 782
SmlI	CTYRAG	3 cut(s)	138, 725, 824
SmoI	CTYRAG	3 cut(s)	138, 725, 824
Sse9I	AATT	2 cut(s)	35, 332
SsiI	CCGC	4 cut(s)	515, 845, 888, 896
SspDI	GGCGCC	1 cut(s)	47
SspMI	CTAG	2 cut(s)	216, 926
StyD4I	CCNGG	2 cut(s)	26, 763
StyI	CCWWGG	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	593
TaiI	ACGT	2 cut(s)	438, 807
TasI	AATT	2 cut(s)	35, 332
TatI	WGTACW	1 cut(s)	817
TauI	GCSGC	2 cut(s)	891, 898
TfiI	GAWTC	1 cut(s)	448
Tru1I	TTAA	1 cut(s)	702
Tru9I	TTAA	1 cut(s)	702
TscAI	CASTG	4 cut(s)	79, 361, 598, 784
TseFI	GTSAC	2 cut(s)	473, 487
TseI	GCWGC	1 cut(s)	605
Tsp45I	GTSAC	2 cut(s)	473, 487
TspDTI	ATGAA	1 cut(s)	515
TspRI	CASTG	4 cut(s)	79, 361, 598, 784
VneI	GTGCAC	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	836
XapI	RAATTY	1 cut(s)	35
XceI	RCATGY	1 cut(s)	15
XspI	CTAG	2 cut(s)	216, 926
ZrmI	AGTACT	1 cut(s)	819
Zsp2I	ATGCAT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.