Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8419211.1

Orthogroup ID

OG0003972

Physical Location & Seq

Genomic Coordinates Reverse (-)

37 .. 861

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8419211.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atgggcaacacatgccgtggatcttccaggggcaaatttttccttggcgacaatcagcccgaagaacaatccactgcttccaattccaagcgtaacacccctactaacctttccgtttccgatacctcctcaaaatctcaagaactatccaaaggaagccccagccccagccccagccccaaacccaaagacaaaactaacaacaataatctacccctcattagtcctagaaaagacaacgccatgaggagaggccacgagaaccaaacttactatgttttaggccataagactgccaacattcgtgatctttacactttgggtcataagttaggacagggacaattcgggactacttatttgtgcaccgagatttcaaccggctctcagtatgcgtgtaagtctatctccaagaggaagttgatctcaaaggaggatgtggatgacgttaggagggagattcagataatgcaccatttggctggtcacaagaacattgtgactatcaaaggtgcatatgaggacccgctgtatgttcatattgtgatggagctttgcgctgggggtgagttgtttgaccggatcatccagaggggacattacagtgagaggaaggcagctgagctgacaaagattattgttggggttgttgaagcttgccattcacttggagttatgcatagggatctgaagcccgaaaacttcttgctggttaacaaggatgatgatttctcactcaaggccattgattttgggctctcagtcttcttcaaaccaggtaaagaaaagaaaaggaatgtgtgctctatttggattcagtcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010119 GO:0010359 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022898 GO:0023052 GO:0032409 GO:0032412 GO:0032870 GO:0032879 GO:0033993 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051716 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902456 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

274

Amino Acids

30.61

Weight (kDa)

9.26

Isoelectric Point (pI)

51.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17290 AT2G17290 AT4G35310 AT4G35310 AT4G38230 AT4G38230 AT4G38230 AT4G38230
fragaria_vesca	FvH4_2g16880 FvH4_2g16880 FvH4_2g16880 FvH4_2g16880 FvH4_2g16880
malus_domestica	MD05G1140300.v1.1 MD05G1140600.v1.1 MD10G1142300.v1.1
prunus_persica	Prupe.8G180800_v2.0.a1 Prupe.8G180800_v2.0.a1
pyrus_communis	pycom05g13570
rosa_chinensis	RchiOBHm_Chr6g0281011
rosa_laevigata	RLG00000013006
rosa_multiflora	Rmu_co8419211.1_g000001 Rmu_sc0012869.1_g000002
rosa_roxburghii	Rroxscaffold_7G00187390
rosa_rugosa	Rorug06G0137800 Rorug06G0137900 Rorug06G0138000 Rorug06G0138100
rosa_samantha	Rh6AG250100 Rh6BG252400 Rh6CG252800 Rh6DG244500
rosa_wichuraiana	Rw6G021630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	527
AclWI	GGATC	3 cut(s)	28, 590, 693
AcsI	RAATTY	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	710
AgsI	TTSAA	3 cut(s)	378, 653, 772
AjnI	CCWGG	2 cut(s)	26, 775
AluBI	AGCT	4 cut(s)	553, 620, 625, 656
AluI	AGCT	4 cut(s)	553, 620, 625, 656
Alw21I	GWGCWC	2 cut(s)	368, 806
Alw44I	GTGCAC	1 cut(s)	364
AlwI	GGATC	3 cut(s)	28, 590, 693
AoxI	GGCC	3 cut(s)	253, 283, 741
ApaLI	GTGCAC	1 cut(s)	364
ApeKI	GCWGC	1 cut(s)	617
ApoI	RAATTY	1 cut(s)	35
ArsI	GACNNNNNNTTYG	2 cut(s)	343, 375
AspLEI	GCGC	1 cut(s)	560
AspS9I	GGNCC	1 cut(s)	523
AsuHPI	GGTGA	1 cut(s)	578
AvaII	GGWCC	1 cut(s)	523
BaeGI	GKGCMC	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	759
BauI	CACGAG	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	757
Bbv12I	GWGCWC	2 cut(s)	368, 806
BbvI	GCAGC	1 cut(s)	629
BccI	CCATC	1 cut(s)	541
BciT130I	CCWGG	2 cut(s)	28, 777
BfaI	CTAG	1 cut(s)	228
BisI	GCNGC	1 cut(s)	618
BlpI	GCTNAGC	1 cut(s)	621
BlsI	GCNGC	1 cut(s)	619
Bme1390I	CCNGG	2 cut(s)	28, 777
Bme18I	GGWCC	1 cut(s)	523
BmgT120I	GGNCC	1 cut(s)	523
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	2 cut(s)	28, 777
BpiI	GAAGAC	1 cut(s)	757
Bpu1102I	GCTNAGC	1 cut(s)	621
BpuEI	CTTGAG	2 cut(s)	123, 722
BsaJI	CCNNGG	3 cut(s)	16, 27, 43
BsaWI	WCCGGW	1 cut(s)	579
Bse118I	RCCGGY	1 cut(s)	380
BseBI	CCWGG	2 cut(s)	28, 777
BseDI	CCNNGG	3 cut(s)	16, 27, 43
BseGI	GGATG	4 cut(s)	442, 448, 585, 727
BseMII	CTCAG	3 cut(s)	401, 612, 774
BseRI	GAGGAG	2 cut(s)	118, 262
BseSI	GKGCMC	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	629
BseYI	CCCAGC	4 cut(s)	161, 167, 173, 560
BshFI	GGCC	3 cut(s)	255, 285, 743
BsiHKAI	GWGCWC	2 cut(s)	368, 806
BsiSI	CCGG	2 cut(s)	381, 580
BslFI	GGGAC	3 cut(s)	354, 364, 609
BsmFI	GGGAC	3 cut(s)	354, 364, 609
BsnI	GGCC	3 cut(s)	255, 285, 743
Bsp1286I	GDGCHC	3 cut(s)	368, 759, 806
Bsp143I	GATC	5 cut(s)	20, 307, 423, 582, 685
Bsp1720I	GCTNAGC	1 cut(s)	621
BspACI	CCGC	1 cut(s)	527
BspANI	GGCC	3 cut(s)	255, 285, 743
BspCNI	CTCAG	3 cut(s)	400, 613, 773
BspLI	GGNNCC	1 cut(s)	525
BspPI	GGATC	3 cut(s)	28, 590, 693
BsrFI	RCCGGY	1 cut(s)	380
BssAI	RCCGGY	1 cut(s)	380
BssECI	CCNNGG	3 cut(s)	16, 27, 43
BssMI	GATC	5 cut(s)	20, 307, 423, 582, 685
BssSI	CACGAG	1 cut(s)	257
BssT1I	CCWWGG	1 cut(s)	43
Bst2BI	CACGAG	1 cut(s)	257
Bst2UI	CCWGG	2 cut(s)	28, 777
Bst4CI	ACNGT	1 cut(s)	605
BstAPI	GCANNNNNTGC	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	658
BstDEI	CTNAG	3 cut(s)	387, 621, 760
BstDSI	CCRYGG	1 cut(s)	16
BstF5I	GGATG	4 cut(s)	442, 448, 585, 727
BstHHI	GCGC	1 cut(s)	560
BstKTI	GATC	5 cut(s)	23, 310, 426, 585, 688
BstMBI	GATC	5 cut(s)	20, 307, 423, 582, 685
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstNI	CCWGG	2 cut(s)	28, 777
BstNSI	RCATGY	1 cut(s)	15
BstSCI	CCNGG	2 cut(s)	26, 775
BstSLI	GKGCMC	1 cut(s)	368
BstV1I	GCAGC	1 cut(s)	629
BstV2I	GAAGAC	1 cut(s)	757
BstX2I	RGATCY	2 cut(s)	20, 685
BstXI	CCANNNNNNTGG	2 cut(s)	482, 668
BstYI	RGATCY	2 cut(s)	20, 685
BsuRI	GGCC	3 cut(s)	255, 285, 743
BtgI	CCRYGG	1 cut(s)	16
BtsCI	GGATG	4 cut(s)	442, 448, 585, 727
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	2 cut(s)	72, 610
Cac8I	GCNNGC	1 cut(s)	658
CfoI	GCGC	1 cut(s)	560
Cfr10I	RCCGGY	1 cut(s)	380
Cfr13I	GGNCC	1 cut(s)	523
CsiI	ACCWGGT	1 cut(s)	775
CviAII	CATG	2 cut(s)	12, 244
DdeI	CTNAG	3 cut(s)	387, 621, 760
DpnI	GATC	5 cut(s)	22, 309, 425, 584, 687
DpnII	GATC	5 cut(s)	20, 307, 423, 582, 685
Eco130I	CCWWGG	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	759
Eco47I	GGWCC	1 cut(s)	523
Eco57I	CTGAAG	1 cut(s)	710
EcoO109I	RGGNCCY	1 cut(s)	523
EcoRII	CCWGG	2 cut(s)	26, 775
EcoT14I	CCWWGG	1 cut(s)	43
EcoT22I	ATGCAT	1 cut(s)	681
EcoT38I	GRGCYC	1 cut(s)	759
ErhI	CCWWGG	1 cut(s)	43
FaeI	CATG	2 cut(s)	15, 247
FaqI	GGGAC	3 cut(s)	354, 364, 609
FatI	CATG	2 cut(s)	11, 243
FauI	CCCGC	1 cut(s)	534
FauNDI	CATATG	1 cut(s)	517
Fnu4HI	GCNGC	1 cut(s)	618
FokI	GGATG	4 cut(s)	449, 455, 572, 734
FriOI	GRGCYC	1 cut(s)	759
Fsp4HI	GCNGC	1 cut(s)	618
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	1 cut(s)	559
GluI	GCNGC	1 cut(s)	618
GsaI	CCCAGC	4 cut(s)	165, 171, 177, 564
HaeIII	GGCC	3 cut(s)	255, 285, 743
HapII	CCGG	2 cut(s)	381, 580
HhaI	GCGC	1 cut(s)	560
Hin1II	CATG	2 cut(s)	15, 247
Hin6I	GCGC	1 cut(s)	558
HinP1I	GCGC	1 cut(s)	558
HincII	GTYRAC	1 cut(s)	715
HindII	GTYRAC	1 cut(s)	715
HindIII	AAGCTT	1 cut(s)	654
HinfI	GANTC	2 cut(s)	460, 814
HpaI	GTTAAC	1 cut(s)	715
HpaII	CCGG	2 cut(s)	381, 580
HphI	GGTGA	1 cut(s)	578
Hpy166II	GTNNAC	2 cut(s)	366, 715
Hpy188I	TCNGA	3 cut(s)	121, 465, 690
Hpy188III	TCNNGA	5 cut(s)	140, 305, 349, 589, 822
Hpy8I	GTNNAC	2 cut(s)	366, 715
HpyAV	CCTTC	1 cut(s)	607
HpyCH4III	ACNGT	1 cut(s)	605
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	4 cut(s)	366, 472, 515, 679
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpyF3I	CTNAG	3 cut(s)	387, 621, 760
HpySE526I	ACGT	1 cut(s)	447
Hsp92II	CATG	2 cut(s)	15, 247
HspAI	GCGC	1 cut(s)	558
KspAI	GTTAAC	1 cut(s)	715
Kzo9I	GATC	5 cut(s)	20, 307, 423, 582, 685
LmnI	GCTCC	1 cut(s)	550
Lsp1109I	GCAGC	1 cut(s)	629
MabI	ACCWGGT	1 cut(s)	775
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	3 cut(s)	92, 485, 499
MalI	GATC	5 cut(s)	22, 309, 425, 584, 687
MboI	GATC	5 cut(s)	20, 307, 423, 582, 685
MboII	GAAGA	4 cut(s)	15, 74, 757, 760
MflI	RGATCY	2 cut(s)	20, 685
MhlI	GDGCHC	3 cut(s)	368, 759, 806
MluCI	AATT	3 cut(s)	35, 82, 344
Mph1103I	ATGCAT	1 cut(s)	681
MseI	TTAA	1 cut(s)	714
MslI	CAYNNNNRTG	1 cut(s)	603
MspA1I	CMGCKG	2 cut(s)	529, 620
MspI	CCGG	2 cut(s)	381, 580
MspR9I	CCNGG	2 cut(s)	28, 777
MvaI	CCWGG	2 cut(s)	28, 777
MwoI	GCNNNNNNNGC	1 cut(s)	12
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	5 cut(s)	20, 307, 423, 582, 685
NlaIII	CATG	2 cut(s)	15, 247
NlaIV	GGNNCC	1 cut(s)	525
NmuCI	GTSAC	2 cut(s)	485, 499
NsiI	ATGCAT	1 cut(s)	681
NspI	RCATGY	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	460, 814
PkrI	GCNGC	1 cut(s)	619
PpuMI	RGGWCCY	1 cut(s)	523
Psp5II	RGGWCCY	1 cut(s)	523
Psp6I	CCWGG	2 cut(s)	26, 775
PspFI	CCCAGC	4 cut(s)	161, 167, 173, 560
PspGI	CCWGG	2 cut(s)	26, 775
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	1 cut(s)	523
PspPPI	RGGWCCY	1 cut(s)	523
PsrI	GAACNNNNNNTAC	2 cut(s)	254, 286
PsuI	RGATCY	2 cut(s)	20, 685
PvuII	CAGCTG	1 cut(s)	620
RseI	CAYNNNNRTG	1 cut(s)	603
SaqAI	TTAA	1 cut(s)	714
SatI	GCNGC	1 cut(s)	618
Sau3AI	GATC	5 cut(s)	20, 307, 423, 582, 685
Sau96I	GGNCC	1 cut(s)	523
ScrFI	CCNGG	2 cut(s)	28, 777
SduI	GDGCHC	3 cut(s)	368, 759, 806
SetI	ASST	9 cut(s)	111, 128, 450, 514, 555, 622, 627, 658, 781
SexAI	ACCWGGT	1 cut(s)	775
SinI	GGWCC	1 cut(s)	523
SmiMI	CAYNNNNRTG	1 cut(s)	603
SmlI	CTYRAG	2 cut(s)	138, 737
SmoI	CTYRAG	2 cut(s)	138, 737
Sse9I	AATT	3 cut(s)	35, 82, 344
SsiI	CCGC	1 cut(s)	527
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	2 cut(s)	26, 775
StyI	CCWWGG	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	605
TaiI	ACGT	1 cut(s)	450
TasI	AATT	3 cut(s)	35, 82, 344
TfiI	GAWTC	2 cut(s)	460, 814
Tru1I	TTAA	1 cut(s)	714
Tru9I	TTAA	1 cut(s)	714
TscAI	CASTG	2 cut(s)	79, 610
TseFI	GTSAC	2 cut(s)	485, 499
TseI	GCWGC	1 cut(s)	617
Tsp45I	GTSAC	2 cut(s)	485, 499
TspDTI	ATGAA	1 cut(s)	527
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	2 cut(s)	79, 610
VneI	GTGCAC	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	523
XapI	RAATTY	1 cut(s)	35
XceI	RCATGY	1 cut(s)	15
XspI	CTAG	1 cut(s)	228
Zsp2I	ATGCAT	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.