Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003972

Physical Location & Seq

Genomic Coordinates Forward (+)

17123658 .. 17124128

Gene Structure 471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g13570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGGCAACACATGCCGTGATCGATCTTTCAGAGGGAAATATTTTCAGGGCTCCAACCAGCCCGAAGAGCAATCTGCTTCCGTTTCCAAGCGCAACACGTCGTCTGACCATACCAATTCTGACCACTCCTCGTCCAGTTTGAAATCGCAGCACCGCGGTCAGCAAGAATTCTCCAAAGACAGCCTTAAACCCAAAACCAACAATAGTAATCCACCCCTCATTAGTCCTAGCAAAGATAACATCATGAGGAGAAGTGCTGATAACCAAAGTTATTATGTGTTGGGTCACAAGACCGCCAACATTCGTGATCTTTACACGTTGGGTCATAAATTAGGACAGGGACAATTTGGGACTACGTATTTATGCACTGAGATTGCTACTGGCAGTCAGTATGCGTGTAAGTCTATCTCCAAGAGGAAGTTGATCGATCGAAGGAGGATGTGGACGATGTTAGGAGGGAGATTCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010119 GO:0010359 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022898 GO:0023052 GO:0032409 GO:0032412 GO:0032870 GO:0032879 GO:0033993 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051716 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902456 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

157

Amino Acids

17.67

Weight (kDa)

10.1

Isoelectric Point (pI)

63.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	105 - 143	9e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17290 AT2G17290 AT4G35310 AT4G35310 AT4G38230 AT4G38230 AT4G38230 AT4G38230
fragaria_vesca	FvH4_2g16880 FvH4_2g16880 FvH4_2g16880 FvH4_2g16880 FvH4_2g16880
malus_domestica	MD05G1140300.v1.1 MD05G1140600.v1.1 MD10G1142300.v1.1
prunus_persica	Prupe.8G180800_v2.0.a1 Prupe.8G180800_v2.0.a1
pyrus_communis	pycom05g13570
rosa_chinensis	RchiOBHm_Chr6g0281011
rosa_laevigata	RLG00000013006
rosa_multiflora	Rmu_co8419211.1_g000001 Rmu_sc0012869.1_g000002
rosa_roxburghii	Rroxscaffold_7G00187390
rosa_rugosa	Rorug06G0137800 Rorug06G0137900 Rorug06G0138000 Rorug06G0138100
rosa_samantha	Rh6AG250100 Rh6BG252400 Rh6CG252800 Rh6DG244500
rosa_wichuraiana	Rw6G021630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	156
AciI	CCGC	3 cut(s)	154, 156, 294
AcsI	RAATTY	1 cut(s)	167
AflIII	ACRYGT	2 cut(s)	96, 315
AgsI	TTSAA	1 cut(s)	142
AjiI	CACGTC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	93
BanII	GRGCYC	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	228
BisI	GCNGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	150
BmgBI	CACGTC	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	52
Bsa29I	ATCGAT	2 cut(s)	22, 426
BsaAI	YACGTR	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	154
Bse1I	ACTGG	2 cut(s)	135, 385
BseCI	ATCGAT	2 cut(s)	22, 426
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	1 cut(s)	444
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	2 cut(s)	135, 385
BseRI	GAGGAG	2 cut(s)	118, 262
BseXI	GCAGC	1 cut(s)	160
Bsh1236I	CGCG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	430
BshVI	ATCGAT	2 cut(s)	22, 426
BsiEI	CGRYCG	1 cut(s)	430
BslFI	GGGAC	2 cut(s)	354, 364
BsmFI	GGGAC	2 cut(s)	354, 364
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp143I	GATC	5 cut(s)	19, 23, 307, 423, 427
BspACI	CCGC	3 cut(s)	154, 156, 294
BspCNI	CTCAG	1 cut(s)	361
BspDI	ATCGAT	2 cut(s)	22, 426
BspFNI	CGCG	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	52
BspQI	GCTCTTC	1 cut(s)	60
BsrI	ACTGG	2 cut(s)	135, 385
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	5 cut(s)	19, 23, 307, 423, 427
Bst6I	CTCTTC	1 cut(s)	60
BstAPI	GCANNNNNTGC	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	357
BstDEI	CTNAG	1 cut(s)	369
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	1 cut(s)	444
BstFNI	CGCG	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	5 cut(s)	22, 26, 310, 426, 430
BstMBI	GATC	5 cut(s)	19, 23, 307, 423, 427
BstMCI	CGRYCG	1 cut(s)	430
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 67
BstNSI	RCATGY	1 cut(s)	15
BstSNI	TACGTA	1 cut(s)	357
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	160
Bsu15I	ATCGAT	2 cut(s)	22, 426
BsuTUI	ATCGAT	2 cut(s)	22, 426
BtgI	CCRYGG	1 cut(s)	154
BtrI	CACGTC	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	444
BtsIMutI	CAGTG	1 cut(s)	366
CciI	TCATGA	1 cut(s)	243
CfoI	GCGC	1 cut(s)	93
Cfr42I	CCGCGG	1 cut(s)	157
ClaI	ATCGAT	2 cut(s)	22, 426
CviAII	CATG	2 cut(s)	12, 244
CviJI	RGCY	3 cut(s)	51, 61, 183
CviKI_1	RGCY	3 cut(s)	51, 61, 183
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	5 cut(s)	21, 25, 309, 425, 429
DpnII	GATC	5 cut(s)	19, 23, 307, 423, 427
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco105I	TACGTA	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	167
EcoT38I	GRGCYC	1 cut(s)	53
FaeI	CATG	2 cut(s)	15, 247
FaiI	YATR	7 cut(s)	13, 111, 245, 276, 327, 364, 393
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FaqI	GGGAC	2 cut(s)	354, 364
FatI	CATG	2 cut(s)	11, 243
Fnu4HI	GCNGC	1 cut(s)	149
FokI	GGATG	1 cut(s)	451
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	149
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	1 cut(s)	149
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	15, 247
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	462
Hpy166II	GTNNAC	1 cut(s)	444
Hpy188I	TCNGA	4 cut(s)	32, 106, 121, 467
Hpy188III	TCNNGA	2 cut(s)	244, 305
Hpy8I	GTNNAC	1 cut(s)	444
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	426
HpyCH4IV	ACGT	3 cut(s)	98, 317, 356
HpyCH4V	TGCA	1 cut(s)	366
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 67
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	3 cut(s)	98, 317, 356
Hsp92II	CATG	2 cut(s)	15, 247
HspAI	GCGC	1 cut(s)	91
KspI	CCGCGG	1 cut(s)	157
Kzo9I	GATC	5 cut(s)	19, 23, 307, 423, 427
LguI	GCTCTTC	1 cut(s)	60
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	5 cut(s)	32, 71, 148, 323, 366
Lsp1109I	GCAGC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	228
MaeII	ACGT	3 cut(s)	98, 317, 356
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	5 cut(s)	21, 25, 309, 425, 429
MboI	GATC	5 cut(s)	19, 23, 307, 423, 427
MboII	GAAGA	1 cut(s)	77
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	4 cut(s)	115, 167, 329, 344
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	7 cut(s)	26, 139, 227, 240, 408, 429, 449
MseI	TTAA	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	156
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	2 cut(s)	12, 67
NdeII	GATC	5 cut(s)	19, 23, 307, 423, 427
NlaIII	CATG	2 cut(s)	15, 247
NlaIV	GGNNCC	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	284
NspI	RCATGY	1 cut(s)	15
PagI	TCATGA	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	462
PkrI	GCNGC	1 cut(s)	150
Ple19I	CGATCG	1 cut(s)	430
Ppu21I	YACGTR	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	52
PvuI	CGATCG	1 cut(s)	430
SacII	CCGCGG	1 cut(s)	157
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	5 cut(s)	19, 23, 307, 423, 427
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	3 cut(s)	101, 320, 359
Sfr303I	CCGCGG	1 cut(s)	157
SgrBI	CCGCGG	1 cut(s)	157
SnaBI	TACGTA	1 cut(s)	357
Sse9I	AATT	4 cut(s)	115, 167, 329, 344
SsiI	CCGC	3 cut(s)	154, 156, 294
SspI	AATATT	1 cut(s)	41
SspMI	CTAG	1 cut(s)	228
TaiI	ACGT	3 cut(s)	101, 320, 359
TaqI	TCGA	3 cut(s)	22, 426, 430
TasI	AATT	4 cut(s)	115, 167, 329, 344
TfiI	GAWTC	1 cut(s)	462
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	284
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	1 cut(s)	373
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	1 cut(s)	15
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.