Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003972

Physical Location & Seq

Genomic Coordinates Forward (+)

19528014 .. 19529112

Gene Structure 1099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0138100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGATGGTGACGAAATCAAAAACTTCATCAAGGTGTGGATCATAGCCATTGCATCTCAATGTTATTGTTATTACGTAGCAGCAAGAATCCCAACAAAGAGCATGATGAGGCTCATTTCTCTCCTCCCAATCTTGTACCTCCTTGTCATGCTCCCCTTGAACCTCCACTCGATCCATCTCGGTGCCCCCTCAGCCTTCTTTCTTGGTTGTCTTGCCATCTTCAAACTCATTCTCTTCTCCTTTGACTCTGGCCCTCTATCACCACCCGCGACAAGACTTCTCCACTTCATTTCCATAGCTCTTCTTCCCATCAACATTAAGAGACGCCCCCAAAAGCCTTGCTACGGTTACACTATGACAAAGTTGGTGCCAAACAAAACAATTTTATGGGCAATGAAGGCCTTGCTTTTGGGTGTAGTAATTCTTGTACGCAAGGATTATAGACAGAAATTACATCCATATGTACTCACAGCCTTGTCCCTTTCCCACCTGTACCTTGGTCTAGAAATAGGCTTTGCTCTGAGTGTAGTCTTGCCTCAAGCCATGTTTGGGTTTGAACTCGAGCCACACTTCAACGAGCCTTACTTTTCCACATCTCTTCAGGACTTTTGGGGCCGTAGATGGAACCTTGTAGCTAGTCTCAAACACTCTACGCCCCCTTGTATACCATCCCGTGAGGCGTATATCTACAGGCAAGGGCGGAGCCACCTTCGAGCTAACGGTTACGGCAAAACCTTCGCGGACTCCAATTCTGCCGGTCATCTCTGCTTTCACCATCTCGGGTTTCATGCACGAGCTCTTCTTTTACTACGTCACTCGTGCGCGTCCCACAGGGGAAATGATGTGCTTCTTTCTCCTACAAGAACTGGTGCCGATGCAAAGAGTTTAGGAGAGTGTGCCATTATGGTGGATTTTGTGAAGACCAACGGTTCCTTATTGTATTATTGGCAGAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010119 GO:0010359 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022898 GO:0023052 GO:0032409 GO:0032412 GO:0032870 GO:0032879 GO:0033993 GO:0034762 GO:0034765 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051716 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902456 GO:1903959

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

319

Amino Acids

36.01

Weight (kDa)

9.64

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17290 AT2G17290 AT4G35310 AT4G35310 AT4G38230 AT4G38230 AT4G38230 AT4G38230
fragaria_vesca	FvH4_2g16880 FvH4_2g16880 FvH4_2g16880 FvH4_2g16880 FvH4_2g16880
malus_domestica	MD05G1140300.v1.1 MD05G1140600.v1.1 MD10G1142300.v1.1
prunus_persica	Prupe.8G180800_v2.0.a1 Prupe.8G180800_v2.0.a1
pyrus_communis	pycom05g13570
rosa_chinensis	RchiOBHm_Chr6g0281011
rosa_laevigata	RLG00000013006
rosa_multiflora	Rmu_co8419211.1_g000001 Rmu_sc0012869.1_g000002
rosa_roxburghii	Rroxscaffold_7G00187390
rosa_rugosa	Rorug06G0137800 Rorug06G0137900 Rorug06G0138000 Rorug06G0138100
rosa_samantha	Rh6AG250100 Rh6BG252400 Rh6CG252800 Rh6DG244500
rosa_wichuraiana	Rw6G021630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	182, 367, 869
AccI	GTMKAC	1 cut(s)	664
AccII	CGCG	3 cut(s)	269, 740, 824
AciI	CCGC	3 cut(s)	267, 700, 740
AclWI	GGATC	2 cut(s)	47, 166
AcuI	CTGAAG	1 cut(s)	584
AcyI	GRCGYC	1 cut(s)	325
AfaI	GTAC	4 cut(s)	137, 429, 465, 494
AfiI	CCNNNNNNNGG	2 cut(s)	344, 549
AgsI	TTSAA	4 cut(s)	160, 223, 557, 574
AluBI	AGCT	4 cut(s)	299, 635, 716, 797
AluI	AGCT	4 cut(s)	299, 635, 716, 797
Alw21I	GWGCWC	1 cut(s)	799
Alw26I	GTCTC	2 cut(s)	316, 644
AlwI	GGATC	2 cut(s)	47, 166
Ama87I	CYCGRG	2 cut(s)	560, 779
AoxI	GGCC	3 cut(s)	250, 399, 613
ApeKI	GCWGC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	824
AspS9I	GGNCC	2 cut(s)	251, 613
AsuHPI	GGTGA	3 cut(s)	20, 252, 764
AvaI	CYCGRG	2 cut(s)	560, 779
BaeGI	GKGCMC	1 cut(s)	187
BanI	GGYRCC	3 cut(s)	182, 367, 869
BanII	GRGCYC	1 cut(s)	799
BauI	CACGAG	2 cut(s)	792, 817
BbsI	GAAGAC	1 cut(s)	926
Bbv12I	GWGCWC	1 cut(s)	799
BbvCI	CCTCAGC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	92
BccI	CCATC	6 cut(s)	183, 224, 317, 615, 676, 783
BceAI	ACGGC	2 cut(s)	600, 742
BcgI	CGANNNNNNTGC	2 cut(s)	718, 752
BcoDI	GTCTC	2 cut(s)	316, 644
BfaI	CTAG	2 cut(s)	503, 636
BfmI	CTRYAG	1 cut(s)	688
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
BmeT110I	CYCGRG	2 cut(s)	560, 779
BmgT120I	GGNCC	2 cut(s)	251, 613
BmiI	GGNNCC	7 cut(s)	184, 369, 614, 626, 704, 871, 931
BmsI	GCATC	2 cut(s)	62, 865
BpiI	GAAGAC	1 cut(s)	926
Bpu10I	CCTNAGC	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	522
BsaAI	YACGTR	1 cut(s)	76
BsaHI	GRCGYC	1 cut(s)	325
BsaJI	CCNNGG	1 cut(s)	496
Bsc4I	CCNNNNNNNGG	2 cut(s)	344, 549
Bse118I	RCCGGY	1 cut(s)	755
Bse1I	ACTGG	1 cut(s)	871
Bse3DI	GCAATG	2 cut(s)	48, 399
BseDI	CCNNGG	1 cut(s)	496
BseGI	GGATG	3 cut(s)	10, 454, 668
BseLI	CCNNNNNNNGG	2 cut(s)	344, 549
BseMI	GCAATG	2 cut(s)	48, 399
BseMII	CTCAG	2 cut(s)	204, 512
BseNI	ACTGG	1 cut(s)	871
BseRI	GAGGAG	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	92
Bsh1236I	CGCG	3 cut(s)	269, 740, 824
BshFI	GGCC	3 cut(s)	252, 401, 615
BshNI	GGYRCC	3 cut(s)	182, 367, 869
BsiHKAI	GWGCWC	1 cut(s)	799
BsiHKCI	CYCGRG	2 cut(s)	560, 779
BsiSI	CCGG	1 cut(s)	756
BslFI	GGGAC	2 cut(s)	463, 811
BslI	CCNNNNNNNGG	2 cut(s)	344, 549
BsmAI	GTCTC	2 cut(s)	316, 644
BsmBI	CGTCTC	1 cut(s)	316
BsmFI	GGGAC	2 cut(s)	463, 811
BsnI	GGCC	3 cut(s)	252, 401, 615
BsoBI	CYCGRG	2 cut(s)	560, 779
Bsp1286I	GDGCHC	2 cut(s)	187, 799
Bsp143I	GATC	2 cut(s)	39, 171
BspACI	CCGC	3 cut(s)	267, 700, 740
BspANI	GGCC	3 cut(s)	252, 401, 615
BspCNI	CTCAG	2 cut(s)	203, 513
BspFNI	CGCG	3 cut(s)	269, 740, 824
BspLI	GGNNCC	7 cut(s)	184, 369, 614, 626, 704, 871, 931
BspPI	GGATC	2 cut(s)	47, 166
BspQI	GCTCTTC	2 cut(s)	306, 804
BspT107I	GGYRCC	3 cut(s)	182, 367, 869
BsrDI	GCAATG	2 cut(s)	48, 399
BsrFI	RCCGGY	1 cut(s)	755
BsrI	ACTGG	1 cut(s)	871
BssAI	RCCGGY	1 cut(s)	755
BssECI	CCNNGG	1 cut(s)	496
BssMI	GATC	2 cut(s)	39, 171
BssNAI	GTATAC	1 cut(s)	665
BssNI	GRCGYC	1 cut(s)	325
BssSI	CACGAG	2 cut(s)	792, 817
BssT1I	CCWWGG	1 cut(s)	496
Bst1107I	GTATAC	1 cut(s)	665
Bst2BI	CACGAG	2 cut(s)	792, 817
Bst4CI	ACNGT	3 cut(s)	347, 722, 929
Bst6I	CTCTTC	4 cut(s)	239, 306, 603, 804
BstACI	GRCGYC	1 cut(s)	325
BstBAI	YACGTR	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	190, 521
BstF5I	GGATG	3 cut(s)	10, 454, 668
BstFNI	CGCG	3 cut(s)	269, 740, 824
BstHHI	GCGC	1 cut(s)	824
BstKTI	GATC	2 cut(s)	42, 174
BstMAI	GTCTC	2 cut(s)	316, 644
BstMBI	GATC	2 cut(s)	39, 171
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 398
BstSFI	CTRYAG	1 cut(s)	688
BstSLI	GKGCMC	1 cut(s)	187
BstSNI	TACGTA	1 cut(s)	76
BstUI	CGCG	3 cut(s)	269, 740, 824
BstV1I	GCAGC	1 cut(s)	92
BstV2I	GAAGAC	1 cut(s)	926
BstXI	CCANNNNNNTGG	1 cut(s)	907
BstZ17I	GTATAC	1 cut(s)	665
BsuRI	GGCC	3 cut(s)	252, 401, 615
BtsCI	GGATG	3 cut(s)	10, 454, 668
CfoI	GCGC	1 cut(s)	824
Cfr10I	RCCGGY	1 cut(s)	755
Cfr13I	GGNCC	2 cut(s)	251, 613
CseI	GACGC	2 cut(s)	333, 813
Csp6I	GTAC	4 cut(s)	136, 428, 464, 493
CviAII	CATG	4 cut(s)	103, 148, 544, 788
CviQI	GTAC	4 cut(s)	136, 428, 464, 493
DdeI	CTNAG	2 cut(s)	190, 521
DpnI	GATC	2 cut(s)	41, 173
DpnII	GATC	2 cut(s)	39, 171
Eam1104I	CTCTTC	4 cut(s)	239, 306, 603, 804
EarI	CTCTTC	4 cut(s)	239, 306, 603, 804
EciI	GGCGGA	1 cut(s)	715
Ecl136II	GAGCTC	1 cut(s)	797
Eco105I	TACGTA	1 cut(s)	76
Eco130I	CCWWGG	1 cut(s)	496
Eco147I	AGGCCT	1 cut(s)	401
Eco24I	GRGCYC	1 cut(s)	799
Eco53kI	GAGCTC	1 cut(s)	797
Eco57I	CTGAAG	1 cut(s)	584
Eco88I	CYCGRG	2 cut(s)	560, 779
EcoICRI	GAGCTC	1 cut(s)	797
EcoT14I	CCWWGG	1 cut(s)	496
EcoT38I	GRGCYC	1 cut(s)	799
ErhI	CCWWGG	1 cut(s)	496
Esp3I	CGTCTC	1 cut(s)	316
FaeI	CATG	4 cut(s)	106, 151, 547, 791
FaqI	GGGAC	2 cut(s)	463, 811
FatI	CATG	4 cut(s)	102, 147, 543, 787
FauI	CCCGC	1 cut(s)	274
FauNDI	CATATG	1 cut(s)	460
FblI	GTMKAC	1 cut(s)	664
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	3 cut(s)	17, 441, 655
FriOI	GRGCYC	1 cut(s)	799
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	2 cut(s)	503, 636
GlaI	GCGC	1 cut(s)	823
GluI	GCNGC	1 cut(s)	81
HaeIII	GGCC	3 cut(s)	252, 401, 615
HapII	CCGG	1 cut(s)	756
HgaI	GACGC	2 cut(s)	333, 813
HhaI	GCGC	1 cut(s)	824
Hin1I	GRCGYC	1 cut(s)	325
Hin1II	CATG	4 cut(s)	106, 151, 547, 791
Hin6I	GCGC	1 cut(s)	822
HinP1I	GCGC	1 cut(s)	822
HinfI	GANTC	3 cut(s)	87, 245, 743
HpaII	CCGG	1 cut(s)	756
HphI	GGTGA	3 cut(s)	20, 252, 764
Hpy166II	GTNNAC	1 cut(s)	665
Hpy188I	TCNGA	1 cut(s)	522
Hpy188III	TCNNGA	2 cut(s)	503, 602
Hpy8I	GTNNAC	1 cut(s)	665
HpyAV	CCTTC	4 cut(s)	205, 391, 719, 745
HpyCH4III	ACNGT	3 cut(s)	347, 722, 929
HpyCH4IV	ACGT	2 cut(s)	75, 811
HpyCH4V	TGCA	3 cut(s)	53, 791, 878
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 398
HpyF3I	CTNAG	2 cut(s)	190, 521
HpySE526I	ACGT	2 cut(s)	75, 811
Hsp92I	GRCGYC	1 cut(s)	325
Hsp92II	CATG	4 cut(s)	106, 151, 547, 791
HspAI	GCGC	1 cut(s)	822
Kzo9I	GATC	2 cut(s)	39, 171
LguI	GCTCTTC	2 cut(s)	306, 804
LmnI	GCTCC	2 cut(s)	156, 702
LpnPI	CCDG	7 cut(s)	234, 503, 587, 676, 769, 817, 852
Lsp1109I	GCAGC	1 cut(s)	92
LweI	GCATC	2 cut(s)	62, 865
MaeI	CTAG	2 cut(s)	503, 636
MaeII	ACGT	2 cut(s)	75, 811
MaeIII	GTNAC	4 cut(s)	8, 347, 722, 812
MalI	GATC	2 cut(s)	41, 173
MboI	GATC	2 cut(s)	39, 171
MboII	GAAGA	7 cut(s)	211, 226, 293, 296, 590, 791, 931
MhlI	GDGCHC	2 cut(s)	187, 799
MluCI	AATT	5 cut(s)	381, 420, 449, 748, 955
MlyI	GAGTC	2 cut(s)	239, 737
MnlI	CCTC	8 cut(s)	102, 134, 149, 173, 199, 264, 546, 670
MseI	TTAA	1 cut(s)	318
MslI	CAYNNNNRTG	5 cut(s)	32, 58, 180, 459, 905
MspI	CCGG	1 cut(s)	756
MvnI	CGCG	3 cut(s)	269, 740, 824
MwoI	GCNNNNNNNGC	2 cut(s)	191, 398
NdeI	CATATG	1 cut(s)	460
NdeII	GATC	2 cut(s)	39, 171
NlaIII	CATG	4 cut(s)	106, 151, 547, 791
NlaIV	GGNNCC	7 cut(s)	184, 369, 614, 626, 704, 871, 931
NmuCI	GTSAC	2 cut(s)	8, 812
PaeR7I	CTCGAG	1 cut(s)	560
PceI	AGGCCT	1 cut(s)	401
PciSI	GCTCTTC	2 cut(s)	306, 804
PfeI	GAWTC	1 cut(s)	87
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	2 cut(s)	239, 737
PpsI	GAGTC	2 cut(s)	239, 737
Ppu21I	YACGTR	1 cut(s)	76
Psp124BI	GAGCTC	1 cut(s)	799
PspN4I	GGNNCC	7 cut(s)	184, 369, 614, 626, 704, 871, 931
PspPI	GGNCC	2 cut(s)	251, 613
PspXI	VCTCGAGB	1 cut(s)	560
RsaI	GTAC	4 cut(s)	137, 429, 465, 494
RsaNI	GTAC	4 cut(s)	136, 428, 464, 493
RseI	CAYNNNNRTG	5 cut(s)	32, 58, 180, 459, 905
SacI	GAGCTC	1 cut(s)	799
SapI	GCTCTTC	2 cut(s)	306, 804
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	2 cut(s)	39, 171
Sau96I	GGNCC	2 cut(s)	251, 613
SchI	GAGTC	2 cut(s)	239, 737
SduI	GDGCHC	2 cut(s)	187, 799
SfaNI	GCATC	2 cut(s)	62, 865
SfcI	CTRYAG	1 cut(s)	688
Sfr274I	CTCGAG	1 cut(s)	560
SlaI	CTCGAG	1 cut(s)	560
SmiMI	CAYNNNNRTG	5 cut(s)	32, 58, 180, 459, 905
SmlI	CTYRAG	2 cut(s)	537, 560
SmoI	CTYRAG	2 cut(s)	537, 560
SnaBI	TACGTA	1 cut(s)	76
Sse9I	AATT	5 cut(s)	381, 420, 449, 748, 955
SseBI	AGGCCT	1 cut(s)	401
SsiI	CCGC	3 cut(s)	267, 700, 740
SspMI	CTAG	2 cut(s)	503, 636
SstI	GAGCTC	1 cut(s)	799
StuI	AGGCCT	1 cut(s)	401
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	3 cut(s)	347, 722, 929
TaiI	ACGT	2 cut(s)	78, 814
TaqI	TCGA	3 cut(s)	170, 561, 712
TasI	AATT	5 cut(s)	381, 420, 449, 748, 955
TatI	WGTACW	1 cut(s)	463
TfiI	GAWTC	1 cut(s)	87
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseFI	GTSAC	2 cut(s)	8, 812
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	2 cut(s)	8, 812
TspDTI	ATGAA	4 cut(s)	16, 277, 410, 776
XbaI	TCTAGA	1 cut(s)	502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	494
XhoI	CTCGAG	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	664
XspI	CTAG	2 cut(s)	503, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.