Rh6AG250100

Calcium-dependent protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
43951990 .. 43955390
3401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG250100.1

Sequence Viewer

Length: 1068 bp
ATGGGCAACACATGCCGTGGATCTTCCAGGGGCAAATTTTTCCTTGGCGCCAATCAGCCCGAAGAACAATCCACTGCTTCCAATACCAAGCGTAGCACCCCTACTGACCTTTCCATTTCCGATACCTCCTCAAAATCTCAAGAACTAACCAAAGGAAGCCCCAGCCCCAAACCCAAAGACAAGAGTAACAACAATAATCTACCCCTCAGTAGTCCTAGAAAAGACAACGCCATGAGGAGAGGCCACGAGAACCAAACTTACTATGTTTTGGGCCATAAGACTGCCAACATTCGTGATCTTTACACTTTGGGTCATAAGTTAGGACAGGGACAATTCGGGACTACTTATTTGTGCACCGAGATTTCAACCGGCTCTCAGTATGCGTGTAAGTCTATCTCCAAGAGGAAGTTGATCTCAAAGGAGGATGTGGATGACGTTAGGAGGGAGATTCAGATAATGCACCATTTGGCTGGTCACAAGAACATTGTGACTATCAAAGGTGCATATGAGGACCCGCTGTCCATCCTTATGTTTCATCAGGTAATAGCTGAAAGCCTTTCTGAGGAAGAGATTGCTGGGCTGCGAGAGATGTTCAAGGCAATGGATACTGATAATAGTGGTGCAATCACGTTTGATGAACTCAAAGCGGGGTTGCGAAAATATGGCTCTACCATGAAGGATGCAGAGATCCGTGATCTTATGGATGCAGCTGATGTTGACAACAGTGGGACTATTGATTATGGGGAATTTATAGCTGCTACAGTCCATCTCAACAAACTAGAACGTGAAGAACATCTTGTTGCTGCCTTCAGATACTTTGACAAGGATGGAAGTGGCTATATTACAGTTGATGAGCTCCAGCAAGCTTGTGCAGAGCATAATATGACTGACGTTCTTCTTGAAGATATTATCAAAGAAGTTGATCAAGATAATGATGGAAGAATTGACTACGGTGAATTTGTTGCCATGATGCAAAAAGGCAATGTGAAAGGCCATATAGCTATTGGAAGACGGACTATGAGGAACAGTTTGAATTTGAGCATGAGAGATGCACCAGGAGCCCTTTAG

Protein Analysis

355

Amino Acids

39.44

Weight (kDa)

5.92

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 101 - 183 1.4e-16 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 102 - 178 3.1e-06 Protein tyrosine and serine/threonine kinase
EF-hand_1 PF00036 194 - 220 6.9e-08 EF hand domain
EF-hand_7 PF13499 194 - 253 8.6e-14 EF-hand domain pair
EF-hand_6 PF13405 194 - 222 2.8e-07 EF-hand domain
EF-hand_8 PF13833 209 - 256 9.4e-06 EF-hand domain pair
EF-hand_7 PF13499 263 - 325 1.3e-15 EF-hand domain pair
EF-hand_6 PF13405 266 - 291 2.1e-07 EF-hand domain
EF-hand_5 PF13202 266 - 288 1.6e-06 EF hand
EF-hand_1 PF00036 267 - 291 4.6e-07 EF hand domain
EF-hand_1 PF00036 300 - 326 1.1e-07 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AciI CCGC 2 cut(s) 515, 647
AclWI GGATC 2 cut(s) 28, 682
AcsI RAATTY 4 cut(s) 35, 746, 956, 1033
AcuI CTGAAG 1 cut(s) 793
AcyI GRCGYC 1 cut(s) 48
AfiI CCNNNNNNNGG 1 cut(s) 562
AgsI TTSAA 4 cut(s) 366, 595, 902, 1033
AhdI GACNNNNNGTC 1 cut(s) 517
AjnI CCWGG 2 cut(s) 26, 1054
AluBI AGCT 6 cut(s) 548, 710, 755, 856, 866, 1001
AluI AGCT 6 cut(s) 548, 710, 755, 856, 866, 1001
Alw21I GWGCWC 2 cut(s) 356, 858
Alw44I GTGCAC 1 cut(s) 352
AlwI GGATC 2 cut(s) 28, 682
AoxI GGCC 3 cut(s) 241, 271, 991
ApaLI GTGCAC 1 cut(s) 352
ApeKI GCWGC 4 cut(s) 580, 707, 755, 803
ApoI RAATTY 4 cut(s) 35, 746, 956, 1033
ArsI GACNNNNNNTTYG 2 cut(s) 331, 363
AspLEI GCGC 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 271, 511
AsuHPI GGTGA 1 cut(s) 965
AvaII GGWCC 1 cut(s) 511
BaeGI GKGCMC 1 cut(s) 356
BanI GGYRCC 1 cut(s) 47
BanII GRGCYC 2 cut(s) 858, 1063
BauI CACGAG 1 cut(s) 245
BbsI GAAGAC 1 cut(s) 1015
Bbv12I GWGCWC 2 cut(s) 356, 858
BbvI GCAGC 4 cut(s) 567, 719, 742, 790
BccI CCATC 4 cut(s) 530, 774, 821, 929
BciT130I CCWGG 2 cut(s) 28, 1056
BciVI GTATCC 1 cut(s) 598
BclI TGATCA 1 cut(s) 922
BfaI CTAG 2 cut(s) 216, 779
BfmI CTRYAG 1 cut(s) 759
BfoI RGCGCY 1 cut(s) 51
BfuI GTATCC 1 cut(s) 598
BisI GCNGC 4 cut(s) 581, 708, 756, 804
BlsI GCNGC 4 cut(s) 582, 709, 757, 805
Bme1390I CCNGG 2 cut(s) 28, 1056
Bme18I GGWCC 1 cut(s) 511
BmeRI GACNNNNNGTC 1 cut(s) 517
BmgT120I GGNCC 2 cut(s) 271, 511
BmiI GGNNCC 3 cut(s) 49, 513, 1060
BmrFI CCNGG 2 cut(s) 28, 1056
BmsI GCATC 4 cut(s) 670, 694, 960, 1039
BpiI GAAGAC 1 cut(s) 1015
BpmI CTGGAG 1 cut(s) 842
BpuEI CTTGAG 1 cut(s) 123
BsaHI GRCGYC 1 cut(s) 48
BsaJI CCNNGG 3 cut(s) 16, 27, 43
Bsc4I CCNNNNNNNGG 1 cut(s) 562
Bse118I RCCGGY 1 cut(s) 368
Bse3DI GCAATG 2 cut(s) 606, 988
BseBI CCWGG 2 cut(s) 28, 1056
BseDI CCNNGG 3 cut(s) 16, 27, 43
BseGI GGATG 6 cut(s) 430, 436, 522, 685, 709, 832
BseLI CCNNNNNNNGG 1 cut(s) 562
BseMI GCAATG 2 cut(s) 606, 988
BseMII CTCAG 3 cut(s) 220, 389, 552
BseRI GAGGAG 2 cut(s) 118, 250
BseSI GKGCMC 1 cut(s) 356
BseXI GCAGC 4 cut(s) 567, 719, 742, 790
BseYI CCCAGC 2 cut(s) 161, 575
BsgI GTGCAG 1 cut(s) 891
BshFI GGCC 3 cut(s) 243, 273, 993
BshNI GGYRCC 1 cut(s) 47
BsiHKAI GWGCWC 2 cut(s) 356, 858
BsiSI CCGG 1 cut(s) 369
BslFI GGGAC 3 cut(s) 342, 352, 742
BslI CCNNNNNNNGG 1 cut(s) 562
BsmFI GGGAC 3 cut(s) 342, 352, 742
BsnI GGCC 3 cut(s) 243, 273, 993
Bsp1286I GDGCHC 3 cut(s) 356, 858, 1063
Bsp143I GATC 6 cut(s) 20, 295, 411, 687, 694, 922
BspACI CCGC 2 cut(s) 515, 647
BspANI GGCC 3 cut(s) 243, 273, 993
BspCNI CTCAG 3 cut(s) 219, 388, 553
BspLI GGNNCC 3 cut(s) 49, 513, 1060
BspPI GGATC 2 cut(s) 28, 682
BspT107I GGYRCC 1 cut(s) 47
BsrDI GCAATG 2 cut(s) 606, 988
BsrFI RCCGGY 1 cut(s) 368
BssAI RCCGGY 1 cut(s) 368
BssECI CCNNGG 3 cut(s) 16, 27, 43
BssMI GATC 6 cut(s) 20, 295, 411, 687, 694, 922
BssNI GRCGYC 1 cut(s) 48
BssSI CACGAG 1 cut(s) 245
BssT1I CCWWGG 1 cut(s) 43
Bst2BI CACGAG 1 cut(s) 245
Bst2UI CCWGG 2 cut(s) 28, 1056
Bst4CI ACNGT 5 cut(s) 725, 763, 847, 953, 1028
Bst6I CTCTTC 1 cut(s) 561
BstACI GRCGYC 1 cut(s) 48
BstAPI GCANNNNNTGC 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 864
BstDEI CTNAG 3 cut(s) 206, 375, 561
BstDSI CCRYGG 1 cut(s) 16
BstENI CCTNNNNNAGG 1 cut(s) 560
BstF5I GGATG 6 cut(s) 430, 436, 522, 685, 709, 832
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 6 cut(s) 23, 298, 414, 690, 697, 925
BstMBI GATC 6 cut(s) 20, 295, 411, 687, 694, 922
BstMWI GCNNNNNNNGC 2 cut(s) 12, 1058
BstNI CCWGG 2 cut(s) 28, 1056
BstNSI RCATGY 1 cut(s) 15
BstSCI CCNGG 2 cut(s) 26, 1054
BstSFI CTRYAG 1 cut(s) 759
BstSLI GKGCMC 1 cut(s) 356
BstV1I GCAGC 4 cut(s) 567, 719, 742, 790
BstV2I GAAGAC 1 cut(s) 1015
BstX2I RGATCY 2 cut(s) 20, 687
BstXI CCANNNNNNTGG 1 cut(s) 470
BstYI RGATCY 2 cut(s) 20, 687
BsuI GTATCC 1 cut(s) 598
BsuRI GGCC 3 cut(s) 243, 273, 993
BtgI CCRYGG 1 cut(s) 16
BtsCI GGATG 6 cut(s) 430, 436, 522, 685, 709, 832
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 72, 730
Cac8I GCNNGC 1 cut(s) 864
CfoI GCGC 1 cut(s) 50
Cfr10I RCCGGY 1 cut(s) 368
Cfr13I GGNCC 2 cut(s) 271, 511
CviAII CATG 5 cut(s) 12, 232, 673, 967, 1042
DdeI CTNAG 3 cut(s) 206, 375, 561
DinI GGCGCC 1 cut(s) 49
DpnI GATC 6 cut(s) 22, 297, 413, 689, 696, 924
DpnII GATC 6 cut(s) 20, 295, 411, 687, 694, 922
DriI GACNNNNNGTC 1 cut(s) 517
Eam1104I CTCTTC 1 cut(s) 561
Eam1105I GACNNNNNGTC 1 cut(s) 517
EarI CTCTTC 1 cut(s) 561
Ecl136II GAGCTC 1 cut(s) 856
Eco130I CCWWGG 1 cut(s) 43
Eco24I GRGCYC 2 cut(s) 858, 1063
Eco47I GGWCC 1 cut(s) 511
Eco53kI GAGCTC 1 cut(s) 856
Eco57I CTGAAG 1 cut(s) 793
EcoICRI GAGCTC 1 cut(s) 856
EcoNI CCTNNNNNAGG 1 cut(s) 560
EcoO109I RGGNCCY 1 cut(s) 511
EcoRII CCWGG 2 cut(s) 26, 1054
EcoT14I CCWWGG 1 cut(s) 43
EcoT38I GRGCYC 2 cut(s) 858, 1063
EgeI GGCGCC 1 cut(s) 49
EheI GGCGCC 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 5 cut(s) 15, 235, 676, 970, 1045
FalI AAGNNNNNCTT 2 cut(s) 780, 812
FaqI GGGAC 3 cut(s) 342, 352, 742
FatI CATG 5 cut(s) 11, 231, 672, 966, 1041
FauI CCCGC 2 cut(s) 522, 640
FauNDI CATATG 1 cut(s) 505
FbaI TGATCA 1 cut(s) 922
Fnu4HI GCNGC 4 cut(s) 581, 708, 756, 804
FokI GGATG 6 cut(s) 437, 443, 509, 692, 716, 839
FriOI GRGCYC 2 cut(s) 858, 1063
Fsp4HI GCNGC 4 cut(s) 581, 708, 756, 804
FspBI CTAG 2 cut(s) 216, 779
GlaI GCGC 1 cut(s) 49
GluI GCNGC 4 cut(s) 581, 708, 756, 804
GsaI CCCAGC 2 cut(s) 165, 579
GsuI CTGGAG 1 cut(s) 842
HaeII RGCGCY 1 cut(s) 51
HaeIII GGCC 3 cut(s) 243, 273, 993
HapII CCGG 1 cut(s) 369
HhaI GCGC 1 cut(s) 50
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 5 cut(s) 15, 235, 676, 970, 1045
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HincII GTYRAC 1 cut(s) 718
HindII GTYRAC 1 cut(s) 718
HindIII AAGCTT 1 cut(s) 864
HinfI GANTC 1 cut(s) 448
HpaII CCGG 1 cut(s) 369
HphI GGTGA 1 cut(s) 965
Hpy166II GTNNAC 2 cut(s) 354, 718
Hpy188I TCNGA 4 cut(s) 121, 453, 562, 812
Hpy188III TCNNGA 5 cut(s) 140, 293, 337, 899, 926
Hpy8I GTNNAC 2 cut(s) 354, 718
HpyAV CCTTC 2 cut(s) 670, 817
HpyCH4III ACNGT 5 cut(s) 725, 763, 847, 953, 1028
HpyCH4IV ACGT 4 cut(s) 435, 629, 784, 891
HpyCH4V TGCA 9 cut(s) 354, 460, 503, 623, 683, 707, 872, 973, 1052
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 1058
HpyF3I CTNAG 3 cut(s) 206, 375, 561
HpySE526I ACGT 4 cut(s) 435, 629, 784, 891
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 5 cut(s) 15, 235, 676, 970, 1045
HspAI GCGC 1 cut(s) 48
KasI GGCGCC 1 cut(s) 47
Ksp22I TGATCA 1 cut(s) 922
Kzo9I GATC 6 cut(s) 20, 295, 411, 687, 694, 922
LmnI GCTCC 2 cut(s) 861, 1058
Lsp1109I GCAGC 4 cut(s) 567, 719, 742, 790
LweI GCATC 4 cut(s) 670, 694, 960, 1039
MaeI CTAG 2 cut(s) 216, 779
MaeII ACGT 4 cut(s) 435, 629, 784, 891
MaeIII GTNAC 3 cut(s) 185, 473, 487
MalI GATC 6 cut(s) 22, 297, 413, 689, 696, 924
MboI GATC 6 cut(s) 20, 295, 411, 687, 694, 922
MboII GAAGA 8 cut(s) 15, 74, 578, 800, 887, 914, 951, 1020
MflI RGATCY 2 cut(s) 20, 687
MhlI GDGCHC 3 cut(s) 356, 858, 1063
MluCI AATT 6 cut(s) 35, 332, 746, 942, 956, 1033
Mly113I GGCGCC 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 527
MspA1I CMGCKG 2 cut(s) 517, 710
MspI CCGG 1 cut(s) 369
MspR9I CCNGG 2 cut(s) 28, 1056
MvaI CCWGG 2 cut(s) 28, 1056
MwoI GCNNNNNNNGC 2 cut(s) 12, 1058
NarI GGCGCC 1 cut(s) 48
NdeI CATATG 1 cut(s) 505
NdeII GATC 6 cut(s) 20, 295, 411, 687, 694, 922
NlaIII CATG 5 cut(s) 15, 235, 676, 970, 1045
NlaIV GGNNCC 3 cut(s) 49, 513, 1060
NmuCI GTSAC 2 cut(s) 473, 487
NspI RCATGY 1 cut(s) 15
PfeI GAWTC 1 cut(s) 448
PkrI GCNGC 4 cut(s) 582, 709, 757, 805
PluTI GGCGCC 1 cut(s) 51
PpuMI RGGWCCY 1 cut(s) 511
Psp124BI GAGCTC 1 cut(s) 858
Psp5II RGGWCCY 1 cut(s) 511
Psp6I CCWGG 2 cut(s) 26, 1054
PspFI CCCAGC 2 cut(s) 161, 575
PspGI CCWGG 2 cut(s) 26, 1054
PspN4I GGNNCC 3 cut(s) 49, 513, 1060
PspPI GGNCC 2 cut(s) 271, 511
PspPPI RGGWCCY 1 cut(s) 511
PsrI GAACNNNNNNTAC 2 cut(s) 242, 274
PsuI RGATCY 2 cut(s) 20, 687
PvuII CAGCTG 1 cut(s) 710
RseI CAYNNNNRTG 1 cut(s) 527
SacI GAGCTC 1 cut(s) 858
SatI GCNGC 4 cut(s) 581, 708, 756, 804
Sau3AI GATC 6 cut(s) 20, 295, 411, 687, 694, 922
Sau96I GGNCC 2 cut(s) 271, 511
ScrFI CCNGG 2 cut(s) 28, 1056
SduI GDGCHC 3 cut(s) 356, 858, 1063
SfaNI GCATC 4 cut(s) 670, 694, 960, 1039
SfcI CTRYAG 1 cut(s) 759
SfoI GGCGCC 1 cut(s) 49
SinI GGWCC 1 cut(s) 511
SmiMI CAYNNNNRTG 1 cut(s) 527
SmlI CTYRAG 1 cut(s) 138
SmoI CTYRAG 1 cut(s) 138
Sse9I AATT 6 cut(s) 35, 332, 746, 942, 956, 1033
SsiI CCGC 2 cut(s) 515, 647
SspDI GGCGCC 1 cut(s) 47
SspMI CTAG 2 cut(s) 216, 779
SstI GAGCTC 1 cut(s) 858
StyD4I CCNGG 2 cut(s) 26, 1054
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 5 cut(s) 725, 763, 847, 953, 1028
TaiI ACGT 4 cut(s) 438, 632, 787, 894
TasI AATT 6 cut(s) 35, 332, 746, 942, 956, 1033
TfiI GAWTC 1 cut(s) 448
TscAI CASTG 2 cut(s) 79, 730
TseFI GTSAC 2 cut(s) 473, 487
TseI GCWGC 4 cut(s) 580, 707, 755, 803
Tsp45I GTSAC 2 cut(s) 473, 487
TspDTI ATGAA 3 cut(s) 524, 651, 689
TspGWI ACGGA 2 cut(s) 680, 1027
TspRI CASTG 2 cut(s) 79, 730
VneI GTGCAC 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 511
XagI CCTNNNNNAGG 1 cut(s) 560
XapI RAATTY 4 cut(s) 35, 746, 956, 1033
XceI RCATGY 1 cut(s) 15
XcmI CCANNNNNNNNNTGG 1 cut(s) 1001
XspI CTAG 2 cut(s) 216, 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.