Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012869.1

Orthogroup ID

OG0012350

Physical Location & Seq

Genomic Coordinates Forward (+)

3679 .. 6709

Gene Structure 3031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012869.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atggagcttagattagaggtgaagagagacaaaatgaggggtgccgagggaagaaggctgtgtgaggagttctcgcctgcgtattatgggctgtgcactgcgggtggaatgctcagtgctggcgctacccatcttgcaatcacgcctctcgatgttctgaaagttaatatgcaggtcaatccagttaaatataacaggatggcttcagggttttctattctctggagagaacaaggcccttcttccctttggagaggttggtctggaaaattgtttggatatggtgttcagggtggctgcagatttggtctatacgaatactttaagaagctttactccgatgtattgataaatcagaacaggagtaccatattctttctcggcagtgcctctgctcaagtatttgctgatattgctctctgtccatttgaagccgtcaaagttcgcgttcaaacacagcccagatttgcaaagggcttggttgatgggtttccaaaactatattcaactgaagggctagccggcttttacaaaggacttttaccactttggggtcgaaatctgccattctcaatgataatgttcacgacatttgagcattcggtggatctgatttatcacaactttattcaaaaaagaaaagaagattgctcaattgcccaacagcttggtgtgacatgtttagcgggctatgcagcaggagctgttggtaccgttgtctctaaccctgcagacaatatcgtctcggctttgtacaataaaaaggccgacagtgtgatgcaggctgtgaggaacattggctttgctaacctatttactagaagccttcctgttcgaattacacttgttggccctgttgttactttgcagtggtttttctatgacaccattaaagtgctaagtggattgccacccagtggagggctcagcagacgtctcgaagaagctaacctatcggcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

320

Amino Acids

35.38

Weight (kDa)

9.46

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17270
fragaria_vesca	FvH4_2g16870 FvH4_2g16870
malus_domestica	MD05G1139900.v1.1 MD10G1142200.v1.1
prunus_persica	Prupe.8G180700_v2.0.a1 Prupe.8G180700_v2.0.a1
pyrus_communis	pycom05g13510 pycom10g12190
rosa_chinensis	RchiOBHm_Chr6g0281001
rosa_laevigata	RLG00000013008
rosa_multiflora	Rmu_sc0012869.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187400
rosa_rugosa	Rorug06G0137800
rosa_samantha	Rh6AG250000 Rh6BG252200 Rh6CG252700 Rh6DG244400
rosa_wichuraiana	Rw6G021620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	740
AatII	GACGTC	1 cut(s)	937
Acc36I	ACCTGC	1 cut(s)	163
Acc65I	GGTACC	1 cut(s)	710
AccB1I	GGYRCC	2 cut(s)	41, 710
AccB7I	CCANNNNNTGG	1 cut(s)	917
AccII	CGCG	1 cut(s)	447
AciI	CCGC	2 cut(s)	101, 686
AclWI	GGATC	1 cut(s)	615
AcuI	CTGAAG	2 cut(s)	189, 531
AcyI	GRCGYC	1 cut(s)	934
AdeI	CACNNNGTG	1 cut(s)	917
AfaI	GTAC	3 cut(s)	367, 712, 755
AfiI	CCNNNNNNNGG	4 cut(s)	551, 917, 920, 921
AflIII	ACRYGT	1 cut(s)	677
AgsI	TTSAA	4 cut(s)	431, 452, 507, 632
AjuI	GAANNNNNNNTTGG	2 cut(s)	487, 519
AloI	GAACNNNNNNTCC	2 cut(s)	270, 302
AluBI	AGCT	5 cut(s)	7, 331, 667, 704, 947
AluI	AGCT	5 cut(s)	7, 331, 667, 704, 947
Alw21I	GWGCWC	1 cut(s)	98
Alw26I	GTCTC	4 cut(s)	21, 724, 748, 941
Alw44I	GTGCAC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	615
AlwNI	CAGNNNCTG	1 cut(s)	704
AoxI	GGCC	3 cut(s)	235, 765, 850
ApaLI	GTGCAC	1 cut(s)	94
ApeKI	GCWGC	2 cut(s)	297, 695
Asp718I	GGTACC	1 cut(s)	710
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	236, 851
AsuHPI	GGTGA	1 cut(s)	31
AsuII	TTCGAA	1 cut(s)	835
AsuNHI	GCTAGC	1 cut(s)	517
BaeGI	GKGCMC	1 cut(s)	98
BaeI	ACNNNNGTAYC	4 cut(s)	349, 382, 702, 735
BanI	GGYRCC	2 cut(s)	41, 710
BanII	GRGCYC	1 cut(s)	927
Bbv12I	GWGCWC	1 cut(s)	98
BbvI	GCAGC	2 cut(s)	284, 707
BccI	CCATC	3 cut(s)	138, 193, 479
BceAI	ACGGC	1 cut(s)	419
BcgI	CGANNNNNNTGC	2 cut(s)	919, 953
BcoDI	GTCTC	4 cut(s)	21, 724, 748, 941
BfaI	CTAG	2 cut(s)	518, 819
BfmI	CTRYAG	2 cut(s)	298, 729
BfoI	RGCGCY	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	163
BisI	GCNGC	2 cut(s)	298, 696
BlpI	GCTNAGC	1 cut(s)	926
BlsI	GCNGC	2 cut(s)	299, 697
BmgT120I	GGNCC	2 cut(s)	236, 851
BmiI	GGNNCC	2 cut(s)	43, 712
BmrI	ACTGGG	1 cut(s)	909
BmsI	GCATC	1 cut(s)	768
BmtI	GCTAGC	1 cut(s)	521
BmuI	ACTGGG	1 cut(s)	909
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
BpmI	CTGGAG	1 cut(s)	244
Bpu1102I	GCTNAGC	1 cut(s)	926
Bpu14I	TTCGAA	1 cut(s)	835
BpuEI	CTTGAG	1 cut(s)	381
BsaHI	GRCGYC	1 cut(s)	934
BsaJI	CCNNGG	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	4 cut(s)	551, 917, 920, 921
Bse118I	RCCGGY	1 cut(s)	521
Bse1I	ACTGG	2 cut(s)	182, 915
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	4 cut(s)	551, 917, 920, 921
BseMII	CTCAG	2 cut(s)	127, 940
BseNI	ACTGG	2 cut(s)	182, 915
BseRI	GAGGAG	1 cut(s)	80
BseSI	GKGCMC	1 cut(s)	98
BseXI	GCAGC	2 cut(s)	284, 707
Bsh1236I	CGCG	1 cut(s)	447
BshFI	GGCC	3 cut(s)	237, 767, 852
BshNI	GGYRCC	2 cut(s)	41, 710
BsiHKAI	GWGCWC	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	522
BslI	CCNNNNNNNGG	4 cut(s)	551, 917, 920, 921
BsmAI	GTCTC	4 cut(s)	21, 724, 748, 941
BsmBI	CGTCTC	2 cut(s)	748, 941
BsmI	GAATGC	2 cut(s)	114, 598
BsnI	GGCC	3 cut(s)	237, 767, 852
Bsp119I	TTCGAA	1 cut(s)	835
Bsp1286I	GDGCHC	2 cut(s)	98, 927
Bsp1407I	TGTACA	1 cut(s)	753
Bsp143I	GATC	1 cut(s)	607
Bsp1720I	GCTNAGC	1 cut(s)	926
BspACI	CCGC	2 cut(s)	101, 686
BspANI	GGCC	3 cut(s)	237, 767, 852
BspCNI	CTCAG	2 cut(s)	126, 939
BspFNI	CGCG	1 cut(s)	447
BspLI	GGNNCC	2 cut(s)	43, 712
BspMAI	CTGCAG	2 cut(s)	302, 733
BspMI	ACCTGC	1 cut(s)	163
BspOI	GCTAGC	1 cut(s)	521
BspPI	GGATC	1 cut(s)	615
BspT104I	TTCGAA	1 cut(s)	835
BspT107I	GGYRCC	2 cut(s)	41, 710
BsrFI	RCCGGY	1 cut(s)	521
BsrGI	TGTACA	1 cut(s)	753
BsrI	ACTGG	2 cut(s)	182, 915
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	1 cut(s)	607
BssNI	GRCGYC	1 cut(s)	934
Bst4CI	ACNGT	2 cut(s)	715, 773
Bst6I	CTCTTC	1 cut(s)	17
BstACI	GRCGYC	1 cut(s)	934
BstAUI	TGTACA	1 cut(s)	753
BstBI	TTCGAA	1 cut(s)	835
BstC8I	GCNNGC	6 cut(s)	78, 121, 519, 523, 688, 783
BstDEI	CTNAG	4 cut(s)	8, 113, 899, 926
BstF5I	GGATG	1 cut(s)	204
BstFNI	CGCG	1 cut(s)	447
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	1 cut(s)	610
BstMAI	GTCTC	4 cut(s)	21, 724, 748, 941
BstMBI	GATC	1 cut(s)	607
BstMWI	GCNNNNNNNGC	3 cut(s)	413, 692, 701
BstNSI	RCATGY	1 cut(s)	681
BstSFI	CTRYAG	2 cut(s)	298, 729
BstSLI	GKGCMC	1 cut(s)	98
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	2 cut(s)	284, 707
BstX2I	RGATCY	1 cut(s)	607
BstXI	CCANNNNNNTGG	1 cut(s)	668
BstYI	RGATCY	1 cut(s)	607
BsuRI	GGCC	3 cut(s)	237, 767, 852
BtsCI	GGATG	1 cut(s)	204
BtsI	GCAGTG	3 cut(s)	96, 391, 875
BtsIMutI	CAGTG	6 cut(s)	96, 121, 391, 778, 875, 922
BveI	ACCTGC	1 cut(s)	163
Cac8I	GCNNGC	6 cut(s)	78, 121, 519, 523, 688, 783
CaiI	CAGNNNCTG	1 cut(s)	704
CfoI	GCGC	1 cut(s)	125
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	2 cut(s)	236, 851
Csp6I	GTAC	3 cut(s)	366, 711, 754
CviAII	CATG	1 cut(s)	678
CviQI	GTAC	3 cut(s)	366, 711, 754
DdeI	CTNAG	4 cut(s)	8, 113, 899, 926
DpnI	GATC	1 cut(s)	609
DpnII	GATC	1 cut(s)	607
DraIII	CACNNNGTG	1 cut(s)	917
DrdI	GACNNNNNNGTC	1 cut(s)	740
DseDI	GACNNNNNNGTC	1 cut(s)	740
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	927
Eco57I	CTGAAG	2 cut(s)	189, 531
EcoO109I	RGGNCCY	1 cut(s)	236
EcoT38I	GRGCYC	1 cut(s)	927
Esp3I	CGTCTC	2 cut(s)	748, 941
FaeI	CATG	1 cut(s)	681
FatI	CATG	1 cut(s)	677
FauI	CCCGC	2 cut(s)	94, 679
Fnu4HI	GCNGC	2 cut(s)	298, 696
FokI	GGATG	1 cut(s)	211
FriOI	GRGCYC	1 cut(s)	927
Fsp4HI	GCNGC	2 cut(s)	298, 696
FspBI	CTAG	2 cut(s)	518, 819
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	2 cut(s)	298, 696
GsuI	CTGGAG	1 cut(s)	244
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	3 cut(s)	237, 767, 852
HapII	CCGG	1 cut(s)	522
HhaI	GCGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	934
Hin1II	CATG	1 cut(s)	681
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HindIII	AAGCTT	1 cut(s)	329
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	2 cut(s)	96, 585
Hpy188I	TCNGA	4 cut(s)	159, 340, 357, 612
Hpy188III	TCNNGA	5 cut(s)	149, 223, 264, 586, 938
Hpy8I	GTNNAC	2 cut(s)	96, 585
HpyAV	CCTTC	4 cut(s)	48, 249, 506, 836
HpyCH4III	ACNGT	2 cut(s)	715, 773
HpyCH4IV	ACGT	1 cut(s)	934
HpyCH4V	TGCA	9 cut(s)	96, 137, 172, 300, 470, 695, 731, 781, 868
HpyF10VI	GCNNNNNNNGC	3 cut(s)	413, 692, 701
HpyF3I	CTNAG	4 cut(s)	8, 113, 899, 926
HpySE526I	ACGT	1 cut(s)	934
Hsp92I	GRCGYC	1 cut(s)	934
Hsp92II	CATG	1 cut(s)	681
HspAI	GCGC	1 cut(s)	123
KpnI	GGTACC	1 cut(s)	714
KroI	GCCGGC	1 cut(s)	521
KroNI	GCCGGC	1 cut(s)	523
Kzo9I	GATC	1 cut(s)	607
LmnI	GCTCC	2 cut(s)	4, 701
Lsp1109I	GCAGC	2 cut(s)	284, 707
LweI	GCATC	1 cut(s)	768
MaeI	CTAG	2 cut(s)	518, 819
MaeII	ACGT	1 cut(s)	934
MaeIII	GTNAC	2 cut(s)	673, 859
MalI	GATC	1 cut(s)	609
MboI	GATC	1 cut(s)	607
MboII	GAAGA	5 cut(s)	34, 63, 234, 656, 953
MfeI	CAATTG	1 cut(s)	654
MflI	RGATCY	1 cut(s)	607
MhlI	GDGCHC	2 cut(s)	98, 927
MluCI	AATT	3 cut(s)	269, 654, 837
MnlI	CCTC	9 cut(s)	10, 30, 40, 58, 156, 248, 400, 783, 914
MroNI	GCCGGC	1 cut(s)	521
MseI	TTAA	5 cut(s)	165, 186, 324, 891, 961
MslI	CAYNNNNRTG	1 cut(s)	893
MspI	CCGG	1 cut(s)	522
MunI	CAATTG	1 cut(s)	654
Mva1269I	GAATGC	2 cut(s)	114, 598
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	3 cut(s)	413, 692, 701
NaeI	GCCGGC	1 cut(s)	523
NdeII	GATC	1 cut(s)	607
NgoMIV	GCCGGC	1 cut(s)	521
NheI	GCTAGC	1 cut(s)	517
NlaIII	CATG	1 cut(s)	681
NlaIV	GGNNCC	2 cut(s)	43, 712
NmeAIII	GCCGAG	3 cut(s)	70, 360, 725
NmuCI	GTSAC	1 cut(s)	673
NspI	RCATGY	1 cut(s)	681
NspV	TTCGAA	1 cut(s)	835
PciI	ACATGT	1 cut(s)	677
PctI	GAATGC	2 cut(s)	114, 598
PdiI	GCCGGC	1 cut(s)	523
PflMI	CCANNNNNTGG	1 cut(s)	917
PkrI	GCNGC	2 cut(s)	299, 697
PscI	ACATGT	1 cut(s)	677
PspN4I	GGNNCC	2 cut(s)	43, 712
PspPI	GGNCC	2 cut(s)	236, 851
PstI	CTGCAG	2 cut(s)	302, 733
PstNI	CAGNNNCTG	1 cut(s)	704
PsuI	RGATCY	1 cut(s)	607
RsaI	GTAC	3 cut(s)	367, 712, 755
RsaNI	GTAC	3 cut(s)	366, 711, 754
RseI	CAYNNNNRTG	1 cut(s)	893
SaqAI	TTAA	5 cut(s)	165, 186, 324, 891, 961
SatI	GCNGC	2 cut(s)	298, 696
Sau3AI	GATC	1 cut(s)	607
Sau96I	GGNCC	2 cut(s)	236, 851
SduI	GDGCHC	2 cut(s)	98, 927
SfaNI	GCATC	1 cut(s)	768
SfcI	CTRYAG	2 cut(s)	298, 729
SfuI	TTCGAA	1 cut(s)	835
SmiMI	CAYNNNNRTG	1 cut(s)	893
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
Sse9I	AATT	3 cut(s)	269, 654, 837
SsiI	CCGC	2 cut(s)	101, 686
SspMI	CTAG	2 cut(s)	518, 819
TaaI	ACNGT	2 cut(s)	715, 773
TaiI	ACGT	1 cut(s)	937
TaqI	TCGA	4 cut(s)	150, 556, 835, 939
TasI	AATT	3 cut(s)	269, 654, 837
TatI	WGTACW	1 cut(s)	753
Tru1I	TTAA	5 cut(s)	165, 186, 324, 891, 961
Tru9I	TTAA	5 cut(s)	165, 186, 324, 891, 961
TscAI	CASTG	6 cut(s)	103, 121, 391, 778, 875, 922
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	2 cut(s)	297, 695
Tsp45I	GTSAC	1 cut(s)	673
TspRI	CASTG	6 cut(s)	103, 121, 391, 778, 875, 922
Van91I	CCANNNNNTGG	1 cut(s)	917
VneI	GTGCAC	1 cut(s)	94
XceI	RCATGY	1 cut(s)	681
XspI	CTAG	2 cut(s)	518, 819
ZraI	GACGTC	1 cut(s)	935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.