Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012350

Physical Location & Seq

Genomic Coordinates Forward (+)

18118651 .. 18122824

Gene Structure 4174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G180700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAGAAAGGTTGAAGGGAGGCTGTGTGAGGAATTTTCACCTGCATATTATGGGCTCTGCACTGTTGGAGGAATGCTCAGTGCTGGCACAACCCATCTTGCAATCACGCCTCTTGATGTCTTGAAAGTTAATATGCAGGTAAATCCAATCAAATATAACAAGATGGCTTCAGGGTTTTCTATTCTTTGGAAAGAACAAGGCCCTTCTTCTCTTTGGAGAGGTTGGTCTGGGAAACTTTTCGGATATGGTGTTCAAGGGGGCTGCAGATTTGGTCTCTACGAATACTTTAAGAAGCTTTACTCTGATGTATTGAAAGATCATAACAGGAGTACCATATTCTTTCTCAGCAGTGCATCTGCTCAAGTATTTGCTGATGTGGCTCTCTGTCCTTTTGAAGCCGTCAAAGTCCGAGTTCAAACACAGCCTTACTTTGCAAAGGGCTTGGTTGATGGGTTTCCAAAACTATATGCAACCGAAGGGCTAGCTGGCTTTTACAAAGGACTTTTCCCACTTTGGGGTCGAAATCTTCCATTCTCGATGATAATGTTCACGACGTTTGAGCACTCAGTGGATCTGATTTATCACAAAGTTATGCAAAGAAGAAAAGAAGATTGCTCAAGACCCCAACAGCTTGGTGTGACATGTTTAGCGGCCTATGCAGCAGGAGCTGTTGGTACTGTTATTTCTAACCCTGCAGACAACATTGTTTCCTCTCTATACAACAAAAAGGCTGACAATGTGATGCAGGCTGTGAAGAACATCGGGCTCGTTAATCTATTTACTAGAAGTCTTCCTGTTCGAATTACACTTGTCGGACCTGTTGTTACCTTGCAGTGGTTTTTCTATGACACCATTAAAGTTCTATGTGGATTGCCTTCCAGTGGAGGGCTTACCAGGCGTCTTGAAGAAGCTAACCTATCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

309

Amino Acids

34.14

Weight (kDa)

9.36

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17270
fragaria_vesca	FvH4_2g16870 FvH4_2g16870
malus_domestica	MD05G1139900.v1.1 MD10G1142200.v1.1
prunus_persica	Prupe.8G180700_v2.0.a1 Prupe.8G180700_v2.0.a1
pyrus_communis	pycom05g13510 pycom10g12190
rosa_chinensis	RchiOBHm_Chr6g0281001
rosa_laevigata	RLG00000013008
rosa_multiflora	Rmu_sc0012869.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187400
rosa_rugosa	Rorug06G0137800
rosa_samantha	Rh6AG250000 Rh6BG252200 Rh6CG252700 Rh6DG244400
rosa_wichuraiana	Rw6G021620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	49
Acc36I	ACCTGC	2 cut(s)	49, 127
AciI	CCGC	1 cut(s)	650
AclWI	GGATC	1 cut(s)	579
AcsI	RAATTY	1 cut(s)	32
AcuI	CTGAAG	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	898
AdeI	CACNNNGTG	1 cut(s)	568
AfaI	GTAC	2 cut(s)	331, 676
AfiI	CCNNNNNNNGG	5 cut(s)	514, 515, 834, 881, 885
AflIII	ACRYGT	1 cut(s)	641
AgsI	TTSAA	7 cut(s)	14, 124, 254, 313, 395, 416, 905
AjnI	CCWGG	1 cut(s)	893
AloI	GAACNNNNNNTCC	2 cut(s)	234, 266
AluBI	AGCT	6 cut(s)	295, 485, 631, 668, 911, 923
AluI	AGCT	6 cut(s)	295, 485, 631, 668, 911, 923
Alw21I	GWGCWC	1 cut(s)	564
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	1 cut(s)	579
AlwNI	CAGNNNCTG	1 cut(s)	668
AoxI	GGCC	2 cut(s)	199, 651
ApeKI	GCWGC	2 cut(s)	261, 659
ApoI	RAATTY	1 cut(s)	32
Asp700I	GAANNNNTTC	1 cut(s)	236
AspS9I	GGNCC	2 cut(s)	200, 815
AsuHPI	GGTGA	1 cut(s)	30
AsuII	TTCGAA	1 cut(s)	799
AsuNHI	GCTAGC	1 cut(s)	481
AvaII	GGWCC	1 cut(s)	815
BaeI	ACNNNNGTAYC	2 cut(s)	313, 346
BanII	GRGCYC	2 cut(s)	57, 768
BbsI	GAAGAC	1 cut(s)	782
Bbv12I	GWGCWC	1 cut(s)	564
BbvI	GCAGC	2 cut(s)	248, 671
BccI	CCATC	3 cut(s)	102, 157, 443
BceAI	ACGGC	1 cut(s)	383
BciT130I	CCWGG	1 cut(s)	895
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	2 cut(s)	482, 783
BfmI	CTRYAG	2 cut(s)	262, 693
BfuAI	ACCTGC	2 cut(s)	49, 127
BisI	GCNGC	3 cut(s)	262, 651, 660
BlsI	GCNGC	3 cut(s)	263, 652, 661
Bme1390I	CCNGG	1 cut(s)	895
Bme18I	GGWCC	1 cut(s)	815
BmgT120I	GGNCC	2 cut(s)	200, 815
BmrFI	CCNGG	1 cut(s)	895
BmsI	GCATC	2 cut(s)	362, 732
BmtI	GCTAGC	1 cut(s)	485
BpiI	GAAGAC	1 cut(s)	782
BplI	GAGNNNNNCTC	2 cut(s)	60, 92
Bpu14I	TTCGAA	1 cut(s)	799
BpuEI	CTTGAG	2 cut(s)	345, 601
BsaHI	GRCGYC	1 cut(s)	898
BsaI	GGTCTC	1 cut(s)	278
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
Bsc4I	CCNNNNNNNGG	5 cut(s)	514, 515, 834, 881, 885
Bse1I	ACTGG	1 cut(s)	879
BseBI	CCWGG	1 cut(s)	895
BseLI	CCNNNNNNNGG	5 cut(s)	514, 515, 834, 881, 885
BseMII	CTCAG	3 cut(s)	91, 358, 579
BseNI	ACTGG	1 cut(s)	879
BseXI	GCAGC	2 cut(s)	248, 671
BsgI	GTGCAG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	201, 653
BsiHKAI	GWGCWC	1 cut(s)	564
BslI	CCNNNNNNNGG	5 cut(s)	514, 515, 834, 881, 885
BsmAI	GTCTC	1 cut(s)	278
BsmI	GAATGC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	201, 653
Bso31I	GGTCTC	1 cut(s)	278
Bsp119I	TTCGAA	1 cut(s)	799
Bsp1286I	GDGCHC	3 cut(s)	57, 564, 768
Bsp143I	GATC	2 cut(s)	316, 571
BspACI	CCGC	1 cut(s)	650
BspANI	GGCC	2 cut(s)	201, 653
BspCNI	CTCAG	3 cut(s)	90, 357, 578
BspMAI	CTGCAG	2 cut(s)	266, 697
BspMI	ACCTGC	2 cut(s)	49, 127
BspOI	GCTAGC	1 cut(s)	485
BspPI	GGATC	1 cut(s)	579
BspT104I	TTCGAA	1 cut(s)	799
BspTNI	GGTCTC	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	879
BssMI	GATC	2 cut(s)	316, 571
BssNI	GRCGYC	1 cut(s)	898
Bst2UI	CCWGG	1 cut(s)	895
Bst4CI	ACNGT	2 cut(s)	64, 679
BstACI	GRCGYC	1 cut(s)	898
BstBI	TTCGAA	1 cut(s)	799
BstC8I	GCNNGC	4 cut(s)	85, 483, 487, 747
BstDEI	CTNAG	3 cut(s)	77, 344, 565
BstKTI	GATC	2 cut(s)	319, 574
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	2 cut(s)	316, 571
BstMWI	GCNNNNNNNGC	5 cut(s)	377, 656, 659, 665, 895
BstNI	CCWGG	1 cut(s)	895
BstNSI	RCATGY	1 cut(s)	645
BstSCI	CCNGG	1 cut(s)	893
BstSFI	CTRYAG	2 cut(s)	262, 693
BstV1I	GCAGC	2 cut(s)	248, 671
BstV2I	GAAGAC	1 cut(s)	782
BstX2I	RGATCY	1 cut(s)	571
BstXI	CCANNNNNNTGG	1 cut(s)	632
BstYI	RGATCY	1 cut(s)	571
BsuRI	GGCC	2 cut(s)	201, 653
BtsI	GCAGTG	2 cut(s)	355, 839
BtsIMutI	CAGTG	6 cut(s)	60, 85, 355, 573, 839, 886
BveI	ACCTGC	2 cut(s)	49, 127
Cac8I	GCNNGC	4 cut(s)	85, 483, 487, 747
CaiI	CAGNNNCTG	1 cut(s)	668
Cfr13I	GGNCC	2 cut(s)	200, 815
CseI	GACGC	1 cut(s)	887
Csp6I	GTAC	2 cut(s)	330, 675
CviAII	CATG	1 cut(s)	642
CviQI	GTAC	2 cut(s)	330, 675
DdeI	CTNAG	3 cut(s)	77, 344, 565
DpnI	GATC	2 cut(s)	318, 573
DpnII	GATC	2 cut(s)	316, 571
DraIII	CACNNNGTG	1 cut(s)	568
Eco24I	GRGCYC	2 cut(s)	57, 768
Eco31I	GGTCTC	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	815
Eco57I	CTGAAG	1 cut(s)	153
EcoO109I	RGGNCCY	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	893
EcoT38I	GRGCYC	2 cut(s)	57, 768
FaeI	CATG	1 cut(s)	645
FatI	CATG	1 cut(s)	641
Fnu4HI	GCNGC	3 cut(s)	262, 651, 660
FriOI	GRGCYC	2 cut(s)	57, 768
Fsp4HI	GCNGC	3 cut(s)	262, 651, 660
FspBI	CTAG	2 cut(s)	482, 783
GluI	GCNGC	3 cut(s)	262, 651, 660
HaeIII	GGCC	2 cut(s)	201, 653
HgaI	GACGC	1 cut(s)	887
Hin1I	GRCGYC	1 cut(s)	898
Hin1II	CATG	1 cut(s)	645
HindIII	AAGCTT	1 cut(s)	293
HphI	GGTGA	1 cut(s)	30
Hpy166II	GTNNAC	1 cut(s)	549
Hpy188I	TCNGA	5 cut(s)	242, 304, 410, 576, 815
Hpy188III	TCNNGA	6 cut(s)	113, 121, 535, 550, 618, 902
Hpy8I	GTNNAC	1 cut(s)	549
Hpy99I	CGWCG	1 cut(s)	556
HpyAV	CCTTC	4 cut(s)	8, 213, 470, 885
HpyCH4III	ACNGT	2 cut(s)	64, 679
HpyCH4IV	ACGT	1 cut(s)	554
HpyF10VI	GCNNNNNNNGC	5 cut(s)	377, 656, 659, 665, 895
HpyF3I	CTNAG	3 cut(s)	77, 344, 565
HpySE526I	ACGT	1 cut(s)	554
Hsp92I	GRCGYC	1 cut(s)	898
Hsp92II	CATG	1 cut(s)	645
Kzo9I	GATC	2 cut(s)	316, 571
LmnI	GCTCC	1 cut(s)	665
Lsp1109I	GCAGC	2 cut(s)	248, 671
LweI	GCATC	2 cut(s)	362, 732
MaeI	CTAG	2 cut(s)	482, 783
MaeII	ACGT	1 cut(s)	554
MaeIII	GTNAC	2 cut(s)	637, 823
MalI	GATC	2 cut(s)	318, 573
MboI	GATC	2 cut(s)	316, 571
MboII	GAAGA	7 cut(s)	198, 518, 612, 620, 766, 782, 917
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	3 cut(s)	57, 564, 768
MluCI	AATT	2 cut(s)	32, 801
MmeI	TCCRAC	2 cut(s)	46, 793
MnlI	CCTC	7 cut(s)	12, 22, 62, 120, 212, 721, 878
MroXI	GAANNNNTTC	1 cut(s)	236
MseI	TTAA	5 cut(s)	129, 288, 771, 855, 925
MspR9I	CCNGG	1 cut(s)	895
Mva1269I	GAATGC	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	895
MwoI	GCNNNNNNNGC	5 cut(s)	377, 656, 659, 665, 895
NdeII	GATC	2 cut(s)	316, 571
NheI	GCTAGC	1 cut(s)	481
NlaIII	CATG	1 cut(s)	645
NmuCI	GTSAC	1 cut(s)	637
NspI	RCATGY	1 cut(s)	645
NspV	TTCGAA	1 cut(s)	799
PaqCI	CACCTGC	1 cut(s)	49
PciI	ACATGT	1 cut(s)	641
PctI	GAATGC	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	236
PkrI	GCNGC	3 cut(s)	263, 652, 661
PscI	ACATGT	1 cut(s)	641
Psp6I	CCWGG	1 cut(s)	893
PspGI	CCWGG	1 cut(s)	893
PspPI	GGNCC	2 cut(s)	200, 815
PstI	CTGCAG	2 cut(s)	266, 697
PstNI	CAGNNNCTG	1 cut(s)	668
PsuI	RGATCY	1 cut(s)	571
RsaI	GTAC	2 cut(s)	331, 676
RsaNI	GTAC	2 cut(s)	330, 675
SaqAI	TTAA	5 cut(s)	129, 288, 771, 855, 925
SatI	GCNGC	3 cut(s)	262, 651, 660
Sau3AI	GATC	2 cut(s)	316, 571
Sau96I	GGNCC	2 cut(s)	200, 815
ScrFI	CCNGG	1 cut(s)	895
SduI	GDGCHC	3 cut(s)	57, 564, 768
SfaNI	GCATC	2 cut(s)	362, 732
SfcI	CTRYAG	2 cut(s)	262, 693
SfuI	TTCGAA	1 cut(s)	799
SinI	GGWCC	1 cut(s)	815
SmlI	CTYRAG	2 cut(s)	360, 616
SmoI	CTYRAG	2 cut(s)	360, 616
Sse9I	AATT	2 cut(s)	32, 801
SsiI	CCGC	1 cut(s)	650
SspMI	CTAG	2 cut(s)	482, 783
StyD4I	CCNGG	1 cut(s)	893
TaaI	ACNGT	2 cut(s)	64, 679
TaiI	ACGT	1 cut(s)	557
TaqI	TCGA	3 cut(s)	520, 536, 799
TasI	AATT	2 cut(s)	32, 801
TauI	GCSGC	1 cut(s)	653
Tru1I	TTAA	5 cut(s)	129, 288, 771, 855, 925
Tru9I	TTAA	5 cut(s)	129, 288, 771, 855, 925
TscAI	CASTG	6 cut(s)	67, 85, 355, 573, 839, 886
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	2 cut(s)	261, 659
Tsp45I	GTSAC	1 cut(s)	637
TspRI	CASTG	6 cut(s)	67, 85, 355, 573, 839, 886
VpaK11BI	GGWCC	1 cut(s)	815
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	1 cut(s)	645
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	2 cut(s)	482, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.