Rh6AG250000

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
43942959 .. 43946825
3867 bp
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UTR
Exon/CDS
Intron
Rh6AG250000.1

Sequence Viewer

Length: 765 bp
ATGGCTTCAGGGTTTTCTATTCTCTGGAGAGAACAAGGCCCTTCTTCCCTTTGGAGAGGTTGGTCTGGAAAATTGTTTGGATATGGTGTTCAGGGTGGCTGCAAATTTGGTCTATACGAATACTTTAAGAAGCTTTACTCCGATGTATTGATAAATCAGAACAGGAGTACCATATTCTTTCTCGGCAGTGCCTCTGCTCAAGTATTTGCTGATATTGCTCTCTGTCCATTTGAAGCCGTCAAAGTTCGCGTTCAAACACAGCCCAGATTTGCAAAGGGCTTGGTTGATGGGTTTCCAAAACTATATTCAACTGAAGGGCTAGCTGGCTTTTACAAAGGACTTTTACCACTTTGGGGTCGAAATCTGCCATTCTCAATGATAATGTTCACGACATTTGAGCATTCGGTTGATCTGATTTATCACAACTTTATTCAAAAAAGAAAAGAAGATTGCTCAATTGCCCAACAGCTTGGTGTGACATGTTTAGCGGGCTATGCAGCAGGAGCAGTTGGTACCGTTGTCTCTAACCCTGCAGACAATATCGTCTCCGCTTTGTACAATAAAAAGGCCGACAGTGTGATGCAGGCTGTGAGGAACATTGGCTTTGCTAACCTATTTACTAGAAGCCTTCCTGTTCGAATTACACTTGTTGGCCCTGTTGTTACTTTGCAGTGGTTTTTCTATGACACCATTAAAGTGCTCAGTGGATTGCCACCCAGTGGAGGGCTCAGCAGACGTCTCGAAGAAGCTAACCTATCGGCTTAA

Protein Analysis

254

Amino Acids

28.0

Weight (kDa)

9.45

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 3 - 48 1.9e-08 Mitochondrial carrier protein
Mito_carr PF00153 60 - 141 3.8e-18 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012350)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 542
AatII GACGTC 1 cut(s) 739
Acc65I GGTACC 1 cut(s) 512
AccB1I GGYRCC 1 cut(s) 512
AccB7I CCANNNNNTGG 1 cut(s) 719
AccII CGCG 1 cut(s) 249
AciI CCGC 2 cut(s) 488, 549
AcsI RAATTY 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 333
AcyI GRCGYC 1 cut(s) 736
AdeI CACNNNGTG 1 cut(s) 719
AfaI GTAC 3 cut(s) 169, 514, 557
AfiI CCNNNNNNNGG 4 cut(s) 353, 719, 722, 723
AflIII ACRYGT 1 cut(s) 479
AgsI TTSAA 4 cut(s) 233, 254, 309, 434
AjuI GAANNNNNNNTTGG 2 cut(s) 289, 321
AloI GAACNNNNNNTCC 2 cut(s) 72, 104
AluBI AGCT 4 cut(s) 133, 323, 469, 749
AluI AGCT 4 cut(s) 133, 323, 469, 749
Alw21I GWGCWC 1 cut(s) 702
Alw26I GTCTC 3 cut(s) 526, 550, 743
AoxI GGCC 3 cut(s) 37, 567, 652
ApeKI GCWGC 2 cut(s) 99, 497
ApoI RAATTY 1 cut(s) 104
Asp718I GGTACC 1 cut(s) 512
AspS9I GGNCC 2 cut(s) 38, 653
AsuII TTCGAA 1 cut(s) 637
AsuNHI GCTAGC 1 cut(s) 319
BaeI ACNNNNGTAYC 4 cut(s) 151, 184, 504, 537
BanI GGYRCC 1 cut(s) 512
BanII GRGCYC 1 cut(s) 729
Bbv12I GWGCWC 1 cut(s) 702
BbvI GCAGC 2 cut(s) 86, 509
BccI CCATC 1 cut(s) 281
BceAI ACGGC 1 cut(s) 221
BcgI CGANNNNNNTGC 2 cut(s) 721, 755
BcoDI GTCTC 3 cut(s) 526, 550, 743
BfaI CTAG 2 cut(s) 320, 621
BfmI CTRYAG 1 cut(s) 531
BisI GCNGC 2 cut(s) 100, 498
BlpI GCTNAGC 1 cut(s) 728
BlsI GCNGC 2 cut(s) 101, 499
BmgT120I GGNCC 2 cut(s) 38, 653
BmiI GGNNCC 1 cut(s) 514
BmrI ACTGGG 1 cut(s) 711
BmsI GCATC 1 cut(s) 570
BmtI GCTAGC 1 cut(s) 323
BmuI ACTGGG 1 cut(s) 711
BpmI CTGGAG 1 cut(s) 46
Bpu1102I GCTNAGC 1 cut(s) 728
Bpu14I TTCGAA 1 cut(s) 637
BpuEI CTTGAG 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 736
Bsc4I CCNNNNNNNGG 4 cut(s) 353, 719, 722, 723
Bse1I ACTGG 1 cut(s) 717
BseLI CCNNNNNNNGG 4 cut(s) 353, 719, 722, 723
BseMII CTCAG 2 cut(s) 715, 742
BseNI ACTGG 1 cut(s) 717
BseXI GCAGC 2 cut(s) 86, 509
Bsh1236I CGCG 1 cut(s) 249
BshFI GGCC 3 cut(s) 39, 569, 654
BshNI GGYRCC 1 cut(s) 512
BsiHKAI GWGCWC 1 cut(s) 702
BslI CCNNNNNNNGG 4 cut(s) 353, 719, 722, 723
BsmAI GTCTC 3 cut(s) 526, 550, 743
BsmBI CGTCTC 2 cut(s) 550, 743
BsmI GAATGC 1 cut(s) 400
BsnI GGCC 3 cut(s) 39, 569, 654
Bsp119I TTCGAA 1 cut(s) 637
Bsp1286I GDGCHC 2 cut(s) 702, 729
Bsp1407I TGTACA 1 cut(s) 555
Bsp143I GATC 1 cut(s) 409
Bsp1720I GCTNAGC 1 cut(s) 728
BspACI CCGC 2 cut(s) 488, 549
BspANI GGCC 3 cut(s) 39, 569, 654
BspCNI CTCAG 2 cut(s) 714, 741
BspFNI CGCG 1 cut(s) 249
BspLI GGNNCC 1 cut(s) 514
BspMAI CTGCAG 1 cut(s) 535
BspOI GCTAGC 1 cut(s) 323
BspT104I TTCGAA 1 cut(s) 637
BspT107I GGYRCC 1 cut(s) 512
BsrGI TGTACA 1 cut(s) 555
BsrI ACTGG 1 cut(s) 717
BssMI GATC 1 cut(s) 409
BssNI GRCGYC 1 cut(s) 736
Bst4CI ACNGT 2 cut(s) 517, 575
BstACI GRCGYC 1 cut(s) 736
BstAUI TGTACA 1 cut(s) 555
BstBI TTCGAA 1 cut(s) 637
BstC8I GCNNGC 4 cut(s) 321, 325, 490, 585
BstDEI CTNAG 2 cut(s) 701, 728
BstFNI CGCG 1 cut(s) 249
BstKTI GATC 1 cut(s) 412
BstMAI GTCTC 3 cut(s) 526, 550, 743
BstMBI GATC 1 cut(s) 409
BstMWI GCNNNNNNNGC 3 cut(s) 215, 494, 503
BstNSI RCATGY 1 cut(s) 483
BstSFI CTRYAG 1 cut(s) 531
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 2 cut(s) 86, 509
BstXI CCANNNNNNTGG 1 cut(s) 470
BsuRI GGCC 3 cut(s) 39, 569, 654
BtsI GCAGTG 2 cut(s) 193, 677
BtsIMutI CAGTG 5 cut(s) 193, 580, 677, 709, 724
Cac8I GCNNGC 4 cut(s) 321, 325, 490, 585
Cfr13I GGNCC 2 cut(s) 38, 653
Csp6I GTAC 3 cut(s) 168, 513, 556
CviAII CATG 1 cut(s) 480
CviQI GTAC 3 cut(s) 168, 513, 556
DdeI CTNAG 2 cut(s) 701, 728
DpnI GATC 1 cut(s) 411
DpnII GATC 1 cut(s) 409
DraIII CACNNNGTG 1 cut(s) 719
DrdI GACNNNNNNGTC 1 cut(s) 542
DseDI GACNNNNNNGTC 1 cut(s) 542
Eco24I GRGCYC 1 cut(s) 729
Eco57I CTGAAG 1 cut(s) 333
EcoO109I RGGNCCY 1 cut(s) 38
EcoT38I GRGCYC 1 cut(s) 729
Esp3I CGTCTC 2 cut(s) 550, 743
FaeI CATG 1 cut(s) 483
FaiI YATR 7 cut(s) 84, 115, 173, 304, 481, 495, 684
FatI CATG 1 cut(s) 479
FauI CCCGC 1 cut(s) 481
Fnu4HI GCNGC 2 cut(s) 100, 498
FriOI GRGCYC 1 cut(s) 729
Fsp4HI GCNGC 2 cut(s) 100, 498
FspBI CTAG 2 cut(s) 320, 621
GluI GCNGC 2 cut(s) 100, 498
GsuI CTGGAG 1 cut(s) 46
HaeIII GGCC 3 cut(s) 39, 569, 654
Hin1I GRCGYC 1 cut(s) 736
Hin1II CATG 1 cut(s) 483
HindIII AAGCTT 1 cut(s) 131
Hpy166II GTNNAC 1 cut(s) 387
Hpy188I TCNGA 3 cut(s) 142, 159, 414
Hpy188III TCNNGA 4 cut(s) 25, 66, 388, 740
Hpy8I GTNNAC 1 cut(s) 387
HpyAV CCTTC 3 cut(s) 51, 308, 638
HpyCH4III ACNGT 2 cut(s) 517, 575
HpyCH4IV ACGT 1 cut(s) 736
HpyCH4V TGCA 6 cut(s) 102, 272, 497, 533, 583, 670
HpyF10VI GCNNNNNNNGC 3 cut(s) 215, 494, 503
HpyF3I CTNAG 2 cut(s) 701, 728
HpySE526I ACGT 1 cut(s) 736
Hsp92I GRCGYC 1 cut(s) 736
Hsp92II CATG 1 cut(s) 483
KpnI GGTACC 1 cut(s) 516
Kzo9I GATC 1 cut(s) 409
LmnI GCTCC 1 cut(s) 503
Lsp1109I GCAGC 2 cut(s) 86, 509
LweI GCATC 1 cut(s) 570
MaeI CTAG 2 cut(s) 320, 621
MaeII ACGT 1 cut(s) 736
MaeIII GTNAC 2 cut(s) 475, 661
MalI GATC 1 cut(s) 411
MboI GATC 1 cut(s) 409
MboII GAAGA 3 cut(s) 36, 458, 755
MfeI CAATTG 1 cut(s) 456
MhlI GDGCHC 2 cut(s) 702, 729
MluCI AATT 4 cut(s) 71, 104, 456, 639
MnlI CCTC 4 cut(s) 50, 202, 585, 716
MseI TTAA 3 cut(s) 126, 693, 763
MslI CAYNNNNRTG 1 cut(s) 695
MunI CAATTG 1 cut(s) 456
Mva1269I GAATGC 1 cut(s) 400
MvnI CGCG 1 cut(s) 249
MwoI GCNNNNNNNGC 3 cut(s) 215, 494, 503
NdeII GATC 1 cut(s) 409
NheI GCTAGC 1 cut(s) 319
NlaIII CATG 1 cut(s) 483
NlaIV GGNNCC 1 cut(s) 514
NmeAIII GCCGAG 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 475
NspI RCATGY 1 cut(s) 483
NspV TTCGAA 1 cut(s) 637
PciI ACATGT 1 cut(s) 479
PctI GAATGC 1 cut(s) 400
PflMI CCANNNNNTGG 1 cut(s) 719
PkrI GCNGC 2 cut(s) 101, 499
PscI ACATGT 1 cut(s) 479
PspN4I GGNNCC 1 cut(s) 514
PspPI GGNCC 2 cut(s) 38, 653
PstI CTGCAG 1 cut(s) 535
RsaI GTAC 3 cut(s) 169, 514, 557
RsaNI GTAC 3 cut(s) 168, 513, 556
RseI CAYNNNNRTG 1 cut(s) 695
SaqAI TTAA 3 cut(s) 126, 693, 763
SatI GCNGC 2 cut(s) 100, 498
Sau3AI GATC 1 cut(s) 409
Sau96I GGNCC 2 cut(s) 38, 653
SduI GDGCHC 2 cut(s) 702, 729
SetI ASST 8 cut(s) 61, 135, 325, 471, 615, 739, 751, 756
SfaNI GCATC 1 cut(s) 570
SfcI CTRYAG 1 cut(s) 531
SfuI TTCGAA 1 cut(s) 637
SmiMI CAYNNNNRTG 1 cut(s) 695
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
Sse9I AATT 4 cut(s) 71, 104, 456, 639
SsiI CCGC 2 cut(s) 488, 549
SspMI CTAG 2 cut(s) 320, 621
TaaI ACNGT 2 cut(s) 517, 575
TaiI ACGT 1 cut(s) 739
TaqI TCGA 3 cut(s) 358, 637, 741
TasI AATT 4 cut(s) 71, 104, 456, 639
TatI WGTACW 1 cut(s) 555
Tru1I TTAA 3 cut(s) 126, 693, 763
Tru9I TTAA 3 cut(s) 126, 693, 763
TscAI CASTG 5 cut(s) 193, 580, 677, 709, 724
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 2 cut(s) 99, 497
Tsp45I GTSAC 1 cut(s) 475
TspRI CASTG 5 cut(s) 193, 580, 677, 709, 724
Van91I CCANNNNNTGG 1 cut(s) 719
XapI RAATTY 1 cut(s) 104
XceI RCATGY 1 cut(s) 483
XspI CTAG 2 cut(s) 320, 621
ZraI GACGTC 1 cut(s) 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.