Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0012350

Physical Location & Seq

Genomic Coordinates Forward (+)

22794527 .. 22797768

Gene Structure 3242 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1142200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCAGGGGTTGAAGGAAGGTTGTGTGAGGAATTTTCACCTGCATATTATGGGCTCTGCACTGTCGGGGGAATGCTCAGTGCTGGCGCTACACATCTCGCAATCACGCCTCTCGATGTCTTGAAAGTTAATATGCAGGTAAATCCAATTAAATATAACAGGATGGGTACAGGGTTTTCTACTCTTTGGAAAGAACAAGGCCCCTCTTCTCTTTGGAGAGGTTGGTCTGGAAAGCTTTTTGGATATGGTGCTCAGGGTGGCTGCAGATTTGGTCTCTACGAATACTTTAAGAAGCTTTACTCGGATGCATTGATAGATCAAAACAAGAGTACCATATTCTTCCTCAGCAGTGCATCTGCTCAAGTATTTGCTGATGTGGCTCTCTGTCCTTTTGAAGCCATCAAAGTCCGAGTTCAAACACAGCCCTACTTTGCAAAGGGCTTGGTTGATGGGGTTCCAAAGCTATACTCAACCGAAGGGATAGCTGGCTTTTACAGAGGACTTTTACCACTTTGGGGTCGAAATCTTCCATTCACAGTGATAATGTTCACAACGTTTGAGCACTCGGTGGATCTGATTTATCGCAACATTATGCAAAGGAGAAAAGAGGATTGCTCAAGAGCCCAACAGCTTGGTGTGACATGTTTAGCGGCCTATGCAGCAGGAGCTGTTGGTACCGTGGTCTCCAACCCCGCAGACAACATCGTTTCCTCTCTTTACAATAAAAAGGCTGCCAATGTGATGCAGGCTGTGAAGAACATTGGCCTCGTTAATTTATTTACTCGAAGTCTTCCTGTGCGAATTACACTTGTCGGCCCTGTTGTTACCTTGCAGTGGTTTTTCTATGACAGCATCAAAGTTCTCTGTGGACTGCCATCTAGTGGAGGGCTTACCAGGCGTCTTGAAGAATCTAACATATCAGCTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

310

Amino Acids

33.89

Weight (kDa)

9.18

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	20 - 102	1e-18	Mitochondrial carrier protein
Mito_carr	PF00153	114 - 194	2.1e-17	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17270
fragaria_vesca	FvH4_2g16870 FvH4_2g16870
malus_domestica	MD05G1139900.v1.1 MD10G1142200.v1.1
prunus_persica	Prupe.8G180700_v2.0.a1 Prupe.8G180700_v2.0.a1
pyrus_communis	pycom05g13510 pycom10g12190
rosa_chinensis	RchiOBHm_Chr6g0281001
rosa_laevigata	RLG00000013008
rosa_multiflora	Rmu_sc0012869.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187400
rosa_rugosa	Rorug06G0137800
rosa_samantha	Rh6AG250000 Rh6BG252200 Rh6CG252700 Rh6DG244400
rosa_wichuraiana	Rw6G021620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	49
Acc36I	ACCTGC	2 cut(s)	49, 127
Acc65I	GGTACC	1 cut(s)	674
AccB1I	GGYRCC	1 cut(s)	674
AccB7I	CCANNNNNTGG	1 cut(s)	881
AciI	CCGC	2 cut(s)	650, 693
AclI	AACGTT	1 cut(s)	554
AclWI	GGATC	1 cut(s)	579
AcsI	RAATTY	1 cut(s)	32
AcyI	GRCGYC	1 cut(s)	898
AdeI	CACNNNGTG	1 cut(s)	568
AfaI	GTAC	3 cut(s)	169, 331, 676
AfiI	CCNNNNNNNGG	3 cut(s)	515, 834, 881
AflIII	ACRYGT	1 cut(s)	641
AgsI	TTSAA	5 cut(s)	14, 124, 395, 416, 905
AjnI	CCWGG	1 cut(s)	893
AluBI	AGCT	7 cut(s)	235, 295, 463, 485, 631, 668, 923
AluI	AGCT	7 cut(s)	235, 295, 463, 485, 631, 668, 923
Alw21I	GWGCWC	2 cut(s)	253, 564
Alw26I	GTCTC	2 cut(s)	278, 688
AlwI	GGATC	1 cut(s)	579
AlwNI	CAGNNNCTG	1 cut(s)	668
AoxI	GGCC	4 cut(s)	199, 651, 763, 814
ApeKI	GCWGC	3 cut(s)	261, 659, 731
ApoI	RAATTY	1 cut(s)	32
Asp718I	GGTACC	1 cut(s)	674
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	2 cut(s)	200, 815
AsuHPI	GGTGA	1 cut(s)	30
BaeI	ACNNNNGTAYC	4 cut(s)	313, 346, 666, 699
BanI	GGYRCC	1 cut(s)	674
BanII	GRGCYC	2 cut(s)	57, 625
BbsI	GAAGAC	1 cut(s)	782
Bbv12I	GWGCWC	2 cut(s)	253, 564
BbvCI	CCTCAGC	1 cut(s)	344
BbvI	GCAGC	3 cut(s)	248, 671, 718
BccI	CCATC	4 cut(s)	157, 407, 443, 883
BciT130I	CCWGG	1 cut(s)	895
BcoDI	GTCTC	2 cut(s)	278, 688
BfaI	CTAG	1 cut(s)	879
BfmI	CTRYAG	1 cut(s)	262
BfoI	RGCGCY	1 cut(s)	90
BfuAI	ACCTGC	2 cut(s)	49, 127
BisI	GCNGC	4 cut(s)	262, 651, 660, 732
BlsI	GCNGC	4 cut(s)	263, 652, 661, 733
Bme1390I	CCNGG	1 cut(s)	895
BmgT120I	GGNCC	2 cut(s)	200, 815
BmiI	GGNNCC	3 cut(s)	202, 456, 676
BmrFI	CCNGG	1 cut(s)	895
BmsI	GCATC	4 cut(s)	295, 362, 732, 861
BpiI	GAAGAC	1 cut(s)	782
BplI	GAGNNNNNCTC	2 cut(s)	599, 631
Bpu10I	CCTNAGC	2 cut(s)	252, 344
BpuEI	CTTGAG	2 cut(s)	345, 601
BsaHI	GRCGYC	1 cut(s)	898
BsaI	GGTCTC	2 cut(s)	278, 688
BsaJI	CCNNGG	1 cut(s)	678
Bsc4I	CCNNNNNNNGG	3 cut(s)	515, 834, 881
BseBI	CCWGG	1 cut(s)	895
BseDI	CCNNGG	1 cut(s)	678
BseGI	GGATG	2 cut(s)	168, 310
BseLI	CCNNNNNNNGG	3 cut(s)	515, 834, 881
BseMII	CTCAG	3 cut(s)	91, 266, 358
BseXI	GCAGC	3 cut(s)	248, 671, 718
BsgI	GTGCAG	1 cut(s)	43
BshFI	GGCC	4 cut(s)	201, 653, 765, 816
BshNI	GGYRCC	1 cut(s)	674
BsiHKAI	GWGCWC	2 cut(s)	253, 564
BslI	CCNNNNNNNGG	3 cut(s)	515, 834, 881
BsmAI	GTCTC	2 cut(s)	278, 688
BsmI	GAATGC	1 cut(s)	78
BsnI	GGCC	4 cut(s)	201, 653, 765, 816
Bso31I	GGTCTC	2 cut(s)	278, 688
Bsp1286I	GDGCHC	4 cut(s)	57, 253, 564, 625
Bsp143I	GATC	2 cut(s)	316, 571
BspACI	CCGC	2 cut(s)	650, 693
BspANI	GGCC	4 cut(s)	201, 653, 765, 816
BspCNI	CTCAG	3 cut(s)	90, 265, 357
BspLI	GGNNCC	3 cut(s)	202, 456, 676
BspMAI	CTGCAG	1 cut(s)	266
BspMI	ACCTGC	2 cut(s)	49, 127
BspPI	GGATC	1 cut(s)	579
BspT107I	GGYRCC	1 cut(s)	674
BspTNI	GGTCTC	2 cut(s)	278, 688
BssECI	CCNNGG	1 cut(s)	678
BssMI	GATC	2 cut(s)	316, 571
BssNI	GRCGYC	1 cut(s)	898
Bst2UI	CCWGG	1 cut(s)	895
Bst4CI	ACNGT	3 cut(s)	64, 538, 679
Bst6I	CTCTTC	1 cut(s)	211
BstACI	GRCGYC	1 cut(s)	898
BstC8I	GCNNGC	3 cut(s)	85, 487, 747
BstDEI	CTNAG	3 cut(s)	77, 252, 344
BstDSI	CCRYGG	1 cut(s)	678
BstF5I	GGATG	2 cut(s)	168, 310
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	2 cut(s)	319, 574
BstMAI	GTCTC	2 cut(s)	278, 688
BstMBI	GATC	2 cut(s)	316, 571
BstMWI	GCNNNNNNNGC	5 cut(s)	377, 656, 659, 665, 895
BstNI	CCWGG	1 cut(s)	895
BstNSI	RCATGY	1 cut(s)	645
BstSCI	CCNGG	1 cut(s)	893
BstSFI	CTRYAG	1 cut(s)	262
BstV1I	GCAGC	3 cut(s)	248, 671, 718
BstV2I	GAAGAC	1 cut(s)	782
BstX2I	RGATCY	1 cut(s)	571
BstXI	CCANNNNNNTGG	1 cut(s)	632
BstYI	RGATCY	1 cut(s)	571
BsuRI	GGCC	4 cut(s)	201, 653, 765, 816
BtgI	CCRYGG	1 cut(s)	678
BtsCI	GGATG	2 cut(s)	168, 310
BtsI	GCAGTG	2 cut(s)	355, 839
BtsIMutI	CAGTG	5 cut(s)	60, 85, 355, 543, 839
BveI	ACCTGC	2 cut(s)	49, 127
Cac8I	GCNNGC	3 cut(s)	85, 487, 747
CaiI	CAGNNNCTG	1 cut(s)	668
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	200, 815
CseI	GACGC	1 cut(s)	887
Csp6I	GTAC	3 cut(s)	168, 330, 675
CviAII	CATG	1 cut(s)	642
CviQI	GTAC	3 cut(s)	168, 330, 675
DdeI	CTNAG	3 cut(s)	77, 252, 344
DpnI	GATC	2 cut(s)	318, 573
DpnII	GATC	2 cut(s)	316, 571
DraIII	CACNNNGTG	1 cut(s)	568
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
Eco24I	GRGCYC	2 cut(s)	57, 625
Eco31I	GGTCTC	2 cut(s)	278, 688
EcoO109I	RGGNCCY	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	893
EcoT22I	ATGCAT	1 cut(s)	310
EcoT38I	GRGCYC	2 cut(s)	57, 625
FaeI	CATG	1 cut(s)	645
FatI	CATG	1 cut(s)	641
FauI	CCCGC	1 cut(s)	700
Fnu4HI	GCNGC	4 cut(s)	262, 651, 660, 732
FokI	GGATG	2 cut(s)	175, 317
FriOI	GRGCYC	2 cut(s)	57, 625
Fsp4HI	GCNGC	4 cut(s)	262, 651, 660, 732
FspBI	CTAG	1 cut(s)	879
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	4 cut(s)	262, 651, 660, 732
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	4 cut(s)	201, 653, 765, 816
HgaI	GACGC	1 cut(s)	887
HhaI	GCGC	1 cut(s)	89
Hin1I	GRCGYC	1 cut(s)	898
Hin1II	CATG	1 cut(s)	645
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HindIII	AAGCTT	2 cut(s)	233, 293
HinfI	GANTC	1 cut(s)	908
HphI	GGTGA	1 cut(s)	30
Hpy166II	GTNNAC	2 cut(s)	549, 869
Hpy188I	TCNGA	3 cut(s)	304, 410, 576
Hpy188III	TCNNGA	5 cut(s)	113, 121, 228, 618, 902
Hpy8I	GTNNAC	2 cut(s)	549, 869
HpyAV	CCTTC	3 cut(s)	8, 12, 470
HpyCH4III	ACNGT	3 cut(s)	64, 538, 679
HpyCH4IV	ACGT	1 cut(s)	554
HpyF10VI	GCNNNNNNNGC	5 cut(s)	377, 656, 659, 665, 895
HpyF3I	CTNAG	3 cut(s)	77, 252, 344
HpySE526I	ACGT	1 cut(s)	554
Hsp92I	GRCGYC	1 cut(s)	898
Hsp92II	CATG	1 cut(s)	645
HspAI	GCGC	1 cut(s)	87
KpnI	GGTACC	1 cut(s)	678
Kzo9I	GATC	2 cut(s)	316, 571
LmnI	GCTCC	1 cut(s)	665
Lsp1109I	GCAGC	3 cut(s)	248, 671, 718
LweI	GCATC	4 cut(s)	295, 362, 732, 861
MaeI	CTAG	1 cut(s)	879
MaeII	ACGT	1 cut(s)	554
MaeIII	GTNAC	2 cut(s)	637, 823
MalI	GATC	2 cut(s)	318, 573
MboI	GATC	2 cut(s)	316, 571
MboII	GAAGA	6 cut(s)	198, 331, 518, 766, 782, 917
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	4 cut(s)	57, 253, 564, 625
MluCI	AATT	4 cut(s)	32, 147, 772, 801
MmeI	TCCRAC	1 cut(s)	711
Mph1103I	ATGCAT	1 cut(s)	310
MseI	TTAA	4 cut(s)	129, 150, 288, 771
MspA1I	CMGCKG	1 cut(s)	923
MspR9I	CCNGG	1 cut(s)	895
Mva1269I	GAATGC	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	895
MwoI	GCNNNNNNNGC	5 cut(s)	377, 656, 659, 665, 895
NdeII	GATC	2 cut(s)	316, 571
NlaIII	CATG	1 cut(s)	645
NlaIV	GGNNCC	3 cut(s)	202, 456, 676
NmuCI	GTSAC	1 cut(s)	637
NsiI	ATGCAT	1 cut(s)	310
NspI	RCATGY	1 cut(s)	645
PaqCI	CACCTGC	1 cut(s)	49
PciI	ACATGT	1 cut(s)	641
PctI	GAATGC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	908
PflMI	CCANNNNNTGG	1 cut(s)	881
PkrI	GCNGC	4 cut(s)	263, 652, 661, 733
PscI	ACATGT	1 cut(s)	641
Psp1406I	AACGTT	1 cut(s)	554
Psp6I	CCWGG	1 cut(s)	893
PspGI	CCWGG	1 cut(s)	893
PspN4I	GGNNCC	3 cut(s)	202, 456, 676
PspPI	GGNCC	2 cut(s)	200, 815
PstI	CTGCAG	1 cut(s)	266
PstNI	CAGNNNCTG	1 cut(s)	668
PsuI	RGATCY	1 cut(s)	571
PvuII	CAGCTG	1 cut(s)	923
RsaI	GTAC	3 cut(s)	169, 331, 676
RsaNI	GTAC	3 cut(s)	168, 330, 675
SaqAI	TTAA	4 cut(s)	129, 150, 288, 771
SatI	GCNGC	4 cut(s)	262, 651, 660, 732
Sau3AI	GATC	2 cut(s)	316, 571
Sau96I	GGNCC	2 cut(s)	200, 815
ScrFI	CCNGG	1 cut(s)	895
SduI	GDGCHC	4 cut(s)	57, 253, 564, 625
SfaNI	GCATC	4 cut(s)	295, 362, 732, 861
SfcI	CTRYAG	1 cut(s)	262
SmlI	CTYRAG	2 cut(s)	360, 616
SmoI	CTYRAG	2 cut(s)	360, 616
Sse9I	AATT	4 cut(s)	32, 147, 772, 801
SsiI	CCGC	2 cut(s)	650, 693
SspMI	CTAG	1 cut(s)	879
StyD4I	CCNGG	1 cut(s)	893
TaaI	ACNGT	3 cut(s)	64, 538, 679
TaiI	ACGT	1 cut(s)	557
TaqI	TCGA	3 cut(s)	114, 520, 784
TasI	AATT	4 cut(s)	32, 147, 772, 801
TauI	GCSGC	1 cut(s)	653
TfiI	GAWTC	1 cut(s)	908
Tru1I	TTAA	4 cut(s)	129, 150, 288, 771
Tru9I	TTAA	4 cut(s)	129, 150, 288, 771
TscAI	CASTG	5 cut(s)	67, 85, 355, 543, 839
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	3 cut(s)	261, 659, 731
Tsp45I	GTSAC	1 cut(s)	637
TspRI	CASTG	5 cut(s)	67, 85, 355, 543, 839
Van91I	CCANNNNNTGG	1 cut(s)	881
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	1 cut(s)	645
XspI	CTAG	1 cut(s)	879
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.