Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0012350

Physical Location & Seq

Genomic Coordinates Forward (+)

46361790 .. 46364559

Gene Structure 2770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG252200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAAGGGTGCCGAGGGAAGAAGGCTGTGTGAGGAGTTCTCGCCTGCGTATTATGGGCTGTGCACTGCGGGTGGAATGCTCAGTGCTGGCGCTACCCATCTTGCAATCACGCCTCTCGATGTTTTGAAAGTTAATATGCAGGTCAATCCAGTTAAATATAACAGGATGGCTTCAGGGTTTTCTATTCTCTGGAGAGAACAAGGCCCTTCTTCCCTTTGGAGAGGTTGGTCTGGAAAATTGTTTGGATATGGTGTTCAGGGTGGCTGCAGATTTGGTCTATACGAATACTTTAAGAAGCTTTACTCCGATGTATTGATAAATCAGAACAGGAGTACCATATTCTTTCTCGGCAGTGCCTCTGCTCAAGTATTTGCTGATATTGCTCTCTGTCCATTTGAAGCCGTCAAAGTTCGTGTTCAAACACAGCCCAGATTTGCAAAGGGCTTGGTTGATGGGTTTCCAAAACTATATTCAACTGAAGGGCTAGCTGGCTTTTACAAAGGACTTTTACCACTATGGGGTCGAAATCTGCCATTCTCAATGATAATGTTCACGACATTTGAGCATTCGGTGGATCTGATTTATCACAACTTTATTCAAAAAAGAAAAGAAGATTGCTCAATTGCCCAACAGCTTGGTGTGACATGTTTAGCGGGCTATGCAGCAGGAGCTGTTGGTACTGTTGTCTCTAACCCTGCAGACAATATCGTCTCCGCTTTGTACAATAAAAAGGCCGACAGTGTGATGCAGGCTGTGAGGAACATTGGCTTTGCTAACCTATTTACTAGAAGCCTTCCTGTTCGAATTACACTTGTTGGCCCTGTTGTTACTTTGCAGTGGTTTTTCTATGACACCATTAAAGTGCTAAGTGGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

292

Amino Acids

32.22

Weight (kDa)

9.4

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	22 - 103	8.7e-19	Mitochondrial carrier protein
Mito_carr	PF00153	115 - 196	5.1e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17270
fragaria_vesca	FvH4_2g16870 FvH4_2g16870
malus_domestica	MD05G1139900.v1.1 MD10G1142200.v1.1
prunus_persica	Prupe.8G180700_v2.0.a1 Prupe.8G180700_v2.0.a1
pyrus_communis	pycom05g13510 pycom10g12190
rosa_chinensis	RchiOBHm_Chr6g0281001
rosa_laevigata	RLG00000013008
rosa_multiflora	Rmu_sc0012869.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187400
rosa_rugosa	Rorug06G0137800
rosa_samantha	Rh6AG250000 Rh6BG252200 Rh6CG252700 Rh6DG244400
rosa_wichuraiana	Rw6G021620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	707
Acc36I	ACCTGC	1 cut(s)	130
AccB1I	GGYRCC	1 cut(s)	8
AciI	CCGC	3 cut(s)	68, 653, 714
AclWI	GGATC	1 cut(s)	582
AcuI	CTGAAG	2 cut(s)	156, 498
AfaI	GTAC	3 cut(s)	334, 679, 722
AfiI	CCNNNNNNNGG	1 cut(s)	518
AflIII	ACRYGT	1 cut(s)	644
AgsI	TTSAA	5 cut(s)	127, 398, 419, 474, 599
AjuI	GAANNNNNNNTTGG	2 cut(s)	454, 486
AloI	GAACNNNNNNTCC	2 cut(s)	237, 269
AluBI	AGCT	4 cut(s)	298, 488, 634, 671
AluI	AGCT	4 cut(s)	298, 488, 634, 671
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	2 cut(s)	691, 715
Alw44I	GTGCAC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	582
AlwNI	CAGNNNCTG	1 cut(s)	671
AoxI	GGCC	3 cut(s)	202, 732, 817
ApaLI	GTGCAC	1 cut(s)	61
ApeKI	GCWGC	2 cut(s)	264, 662
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	203, 818
AsuII	TTCGAA	1 cut(s)	802
AsuNHI	GCTAGC	1 cut(s)	484
BaeGI	GKGCMC	1 cut(s)	65
BaeI	ACNNNNGTAYC	4 cut(s)	316, 349, 669, 702
BanI	GGYRCC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	2 cut(s)	251, 674
BccI	CCATC	3 cut(s)	105, 160, 446
BceAI	ACGGC	1 cut(s)	386
BcoDI	GTCTC	2 cut(s)	691, 715
BfaI	CTAG	2 cut(s)	485, 786
BfmI	CTRYAG	2 cut(s)	265, 696
BfoI	RGCGCY	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	130
BisI	GCNGC	2 cut(s)	265, 663
BlsI	GCNGC	2 cut(s)	266, 664
BmgT120I	GGNCC	2 cut(s)	203, 818
BmiI	GGNNCC	1 cut(s)	10
BmsI	GCATC	1 cut(s)	735
BmtI	GCTAGC	1 cut(s)	488
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
BpmI	CTGGAG	1 cut(s)	211
Bpu14I	TTCGAA	1 cut(s)	802
BpuEI	CTTGAG	1 cut(s)	348
BsaJI	CCNNGG	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	1 cut(s)	518
Bse1I	ACTGG	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	518
BseMII	CTCAG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	65
BseXI	GCAGC	2 cut(s)	251, 674
BshFI	GGCC	3 cut(s)	204, 734, 819
BshNI	GGYRCC	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	518
BsmAI	GTCTC	2 cut(s)	691, 715
BsmBI	CGTCTC	1 cut(s)	715
BsmI	GAATGC	2 cut(s)	81, 565
BsnI	GGCC	3 cut(s)	204, 734, 819
Bsp119I	TTCGAA	1 cut(s)	802
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp1407I	TGTACA	1 cut(s)	720
Bsp143I	GATC	1 cut(s)	574
BspACI	CCGC	3 cut(s)	68, 653, 714
BspANI	GGCC	3 cut(s)	204, 734, 819
BspCNI	CTCAG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	10
BspMAI	CTGCAG	2 cut(s)	269, 700
BspMI	ACCTGC	1 cut(s)	130
BspOI	GCTAGC	1 cut(s)	488
BspPI	GGATC	1 cut(s)	582
BspT104I	TTCGAA	1 cut(s)	802
BspT107I	GGYRCC	1 cut(s)	8
BsrGI	TGTACA	1 cut(s)	720
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	1 cut(s)	574
Bst4CI	ACNGT	2 cut(s)	682, 740
BstAUI	TGTACA	1 cut(s)	720
BstBI	TTCGAA	1 cut(s)	802
BstC8I	GCNNGC	6 cut(s)	45, 88, 486, 490, 655, 750
BstDEI	CTNAG	2 cut(s)	80, 866
BstF5I	GGATG	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	577
BstMAI	GTCTC	2 cut(s)	691, 715
BstMBI	GATC	1 cut(s)	574
BstMWI	GCNNNNNNNGC	3 cut(s)	380, 659, 668
BstNSI	RCATGY	1 cut(s)	648
BstSFI	CTRYAG	2 cut(s)	265, 696
BstSLI	GKGCMC	1 cut(s)	65
BstV1I	GCAGC	2 cut(s)	251, 674
BstX2I	RGATCY	1 cut(s)	574
BstXI	CCANNNNNNTGG	1 cut(s)	635
BstYI	RGATCY	1 cut(s)	574
BsuRI	GGCC	3 cut(s)	204, 734, 819
BtsCI	GGATG	1 cut(s)	171
BtsI	GCAGTG	3 cut(s)	63, 358, 842
BtsIMutI	CAGTG	5 cut(s)	63, 88, 358, 745, 842
BveI	ACCTGC	1 cut(s)	130
Cac8I	GCNNGC	6 cut(s)	45, 88, 486, 490, 655, 750
CaiI	CAGNNNCTG	1 cut(s)	671
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	203, 818
Csp6I	GTAC	3 cut(s)	333, 678, 721
CviAII	CATG	1 cut(s)	645
CviQI	GTAC	3 cut(s)	333, 678, 721
DdeI	CTNAG	2 cut(s)	80, 866
DpnI	GATC	1 cut(s)	576
DpnII	GATC	1 cut(s)	574
DrdI	GACNNNNNNGTC	1 cut(s)	707
DseDI	GACNNNNNNGTC	1 cut(s)	707
Eco57I	CTGAAG	2 cut(s)	156, 498
EcoO109I	RGGNCCY	1 cut(s)	203
Esp3I	CGTCTC	1 cut(s)	715
FaeI	CATG	1 cut(s)	648
FatI	CATG	1 cut(s)	644
FauI	CCCGC	2 cut(s)	61, 646
Fnu4HI	GCNGC	2 cut(s)	265, 663
FokI	GGATG	1 cut(s)	178
Fsp4HI	GCNGC	2 cut(s)	265, 663
FspBI	CTAG	2 cut(s)	485, 786
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	2 cut(s)	265, 663
GsuI	CTGGAG	1 cut(s)	211
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	3 cut(s)	204, 734, 819
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	1 cut(s)	648
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	296
Hpy166II	GTNNAC	2 cut(s)	63, 552
Hpy188I	TCNGA	3 cut(s)	307, 324, 579
Hpy188III	TCNNGA	4 cut(s)	116, 190, 231, 553
Hpy8I	GTNNAC	2 cut(s)	63, 552
HpyAV	CCTTC	4 cut(s)	15, 216, 473, 803
HpyCH4III	ACNGT	2 cut(s)	682, 740
HpyCH4V	TGCA	9 cut(s)	63, 104, 139, 267, 437, 662, 698, 748, 835
HpyF10VI	GCNNNNNNNGC	3 cut(s)	380, 659, 668
HpyF3I	CTNAG	2 cut(s)	80, 866
Hsp92II	CATG	1 cut(s)	648
HspAI	GCGC	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	574
LmnI	GCTCC	1 cut(s)	668
Lsp1109I	GCAGC	2 cut(s)	251, 674
LweI	GCATC	1 cut(s)	735
MaeI	CTAG	2 cut(s)	485, 786
MaeIII	GTNAC	2 cut(s)	640, 826
MalI	GATC	1 cut(s)	576
MboI	GATC	1 cut(s)	574
MboII	GAAGA	3 cut(s)	30, 201, 623
MfeI	CAATTG	1 cut(s)	621
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	3 cut(s)	236, 621, 804
MnlI	CCTC	6 cut(s)	7, 25, 123, 215, 367, 750
MseI	TTAA	4 cut(s)	132, 153, 291, 858
MslI	CAYNNNNRTG	1 cut(s)	860
MunI	CAATTG	1 cut(s)	621
Mva1269I	GAATGC	2 cut(s)	81, 565
MwoI	GCNNNNNNNGC	3 cut(s)	380, 659, 668
NdeII	GATC	1 cut(s)	574
NheI	GCTAGC	1 cut(s)	484
NlaIII	CATG	1 cut(s)	648
NlaIV	GGNNCC	1 cut(s)	10
NmeAIII	GCCGAG	2 cut(s)	37, 327
NmuCI	GTSAC	1 cut(s)	640
NspI	RCATGY	1 cut(s)	648
NspV	TTCGAA	1 cut(s)	802
PciI	ACATGT	1 cut(s)	644
PctI	GAATGC	2 cut(s)	81, 565
PkrI	GCNGC	2 cut(s)	266, 664
PscI	ACATGT	1 cut(s)	644
PspN4I	GGNNCC	1 cut(s)	10
PspPI	GGNCC	2 cut(s)	203, 818
PstI	CTGCAG	2 cut(s)	269, 700
PstNI	CAGNNNCTG	1 cut(s)	671
PsuI	RGATCY	1 cut(s)	574
RsaI	GTAC	3 cut(s)	334, 679, 722
RsaNI	GTAC	3 cut(s)	333, 678, 721
RseI	CAYNNNNRTG	1 cut(s)	860
SaqAI	TTAA	4 cut(s)	132, 153, 291, 858
SatI	GCNGC	2 cut(s)	265, 663
Sau3AI	GATC	1 cut(s)	574
Sau96I	GGNCC	2 cut(s)	203, 818
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	7 cut(s)	144, 226, 300, 490, 636, 673, 780
SfaNI	GCATC	1 cut(s)	735
SfcI	CTRYAG	2 cut(s)	265, 696
SfuI	TTCGAA	1 cut(s)	802
SmiMI	CAYNNNNRTG	1 cut(s)	860
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
Sse9I	AATT	3 cut(s)	236, 621, 804
SsiI	CCGC	3 cut(s)	68, 653, 714
SspMI	CTAG	2 cut(s)	485, 786
TaaI	ACNGT	2 cut(s)	682, 740
TaqI	TCGA	3 cut(s)	117, 523, 802
TasI	AATT	3 cut(s)	236, 621, 804
TatI	WGTACW	1 cut(s)	720
Tru1I	TTAA	4 cut(s)	132, 153, 291, 858
Tru9I	TTAA	4 cut(s)	132, 153, 291, 858
TscAI	CASTG	5 cut(s)	70, 88, 358, 745, 842
TseFI	GTSAC	1 cut(s)	640
TseI	GCWGC	2 cut(s)	264, 662
Tsp45I	GTSAC	1 cut(s)	640
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	5 cut(s)	70, 88, 358, 745, 842
VneI	GTGCAC	1 cut(s)	61
XceI	RCATGY	1 cut(s)	648
XspI	CTAG	2 cut(s)	485, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.