Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012350

Physical Location & Seq

Genomic Coordinates Forward (+)

14661281 .. 14664908

Gene Structure 3628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g16870.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGATTTGTGGTGAAGAGAGCAAAATGAGAGGTGCCGAGGGAAGAAGGTTGTGTGAGGAGTTCTCGCCTGCGTATTATGGGCTGTGCACTGTGGGTGGAATGCTCAGTGCTGGCGCTACCCATCTCGCAATCACTCCTCTTGATGTCTTGAAAGTTAATATGCAGGTTAATCCAATTAAATATAACAGGATGGGTTCAGGGTTTTCTATTCTCTGGAGAGAACAAGGCCCTTATTCCCTTTGGAGAGGTTGGTCTGGCAAATTGTTTGGATACGGTATTCAGGGTGGCTGCAGATTTGGTCTATATGAATACTTTAAGAAGCTATACTCTGATGTGCTGATAAATCAGAACAGGAGTACCATATTCTTTCTCAGCAGTGCCTCTGCTCAAGTATTTGCTGATATTGCTCTCTGTCCATTTGAAGCCGTCAAAGTTCGCGTTCAAACACAGCCCAGATTTGCAAAGGGCTTGGTTGATGGCTTTCCAAAACTATATTCAACTGAAGGGCTAGCTGGCTTGTACAAAGGACTTTTACCACTTTGGGGTCGAAATCTGCCATTTGCAATGATAATGTTCACGACATTTGAGCATTCGGTGGATCTGGTTTATCACAAAGTTATTCATAAAAGAAAAGAAGATTGCTCAATTGTCCAACAGCTTGGTGTGACATGTTTAGCGGGATATGCAGCAGGAGCTGTTGGTACTGTTGTCTCTAACCCTGCAGACAATATTGTCTCCTCTTTGTACAATAAAAAGGCCAACAGTGTGATGCAGGCTGTGAGGAACATTGGCTTTGCTAACCTATTTACTAGAAGCCTTCCCATTCGAATTACGCTTGTTGGCCCTGTTATTACTTTGCAGTGGTTTTTCTATGACACCATTAAAGTGCTAAGTGGATTGCCATCCAGTGGAGGGCTTACCAGACGTCTGGAAGAAGCTAACCTATCGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

318

Amino Acids

34.99

Weight (kDa)

9.4

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	29 - 111	3.1e-18	Mitochondrial carrier protein
Mito_carr	PF00153	123 - 203	2.5e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17270
fragaria_vesca	FvH4_2g16870 FvH4_2g16870
malus_domestica	MD05G1139900.v1.1 MD10G1142200.v1.1
prunus_persica	Prupe.8G180700_v2.0.a1 Prupe.8G180700_v2.0.a1
pyrus_communis	pycom05g13510 pycom10g12190
rosa_chinensis	RchiOBHm_Chr6g0281001
rosa_laevigata	RLG00000013008
rosa_multiflora	Rmu_sc0012869.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187400
rosa_rugosa	Rorug06G0137800
rosa_samantha	Rh6AG250000 Rh6BG252200 Rh6CG252700 Rh6DG244400
rosa_wichuraiana	Rw6G021620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	731
AatII	GACGTC	1 cut(s)	928
Acc36I	ACCTGC	1 cut(s)	154
AccB1I	GGYRCC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	908
AccII	CGCG	1 cut(s)	438
AciI	CCGC	1 cut(s)	677
AclWI	GGATC	1 cut(s)	606
AcuI	CTGAAG	1 cut(s)	522
AcyI	GRCGYC	1 cut(s)	925
AfaI	GTAC	4 cut(s)	358, 521, 703, 746
AfiI	CCNNNNNNNGG	3 cut(s)	542, 908, 912
AflIII	ACRYGT	1 cut(s)	668
AgsI	TTSAA	4 cut(s)	151, 422, 443, 498
AjuI	GAANNNNNNNTTGG	2 cut(s)	478, 510
AluBI	AGCT	5 cut(s)	322, 512, 658, 695, 938
AluI	AGCT	5 cut(s)	322, 512, 658, 695, 938
Alw21I	GWGCWC	1 cut(s)	89
Alw26I	GTCTC	2 cut(s)	715, 739
Alw44I	GTGCAC	1 cut(s)	85
AlwI	GGATC	1 cut(s)	606
AlwNI	CAGNNNCTG	1 cut(s)	695
AoxI	GGCC	3 cut(s)	226, 756, 841
ApaLI	GTGCAC	1 cut(s)	85
ApeKI	GCWGC	2 cut(s)	288, 686
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	227, 842
AsuHPI	GGTGA	1 cut(s)	23
AsuII	TTCGAA	1 cut(s)	826
AsuNHI	GCTAGC	1 cut(s)	508
BaeGI	GKGCMC	1 cut(s)	89
BaeI	ACNNNNGTAYC	4 cut(s)	340, 373, 693, 726
BanI	GGYRCC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	89
BbvI	GCAGC	2 cut(s)	275, 698
BccI	CCATC	4 cut(s)	129, 184, 470, 910
BceAI	ACGGC	1 cut(s)	410
BciVI	GTATCC	1 cut(s)	263
BcoDI	GTCTC	2 cut(s)	715, 739
BfaI	CTAG	2 cut(s)	509, 810
BfmI	CTRYAG	2 cut(s)	289, 720
BfoI	RGCGCY	1 cut(s)	117
BfuAI	ACCTGC	1 cut(s)	154
BfuI	GTATCC	1 cut(s)	263
BisI	GCNGC	2 cut(s)	289, 687
BlsI	GCNGC	2 cut(s)	290, 688
BmgT120I	GGNCC	2 cut(s)	227, 842
BmiI	GGNNCC	1 cut(s)	34
BmsI	GCATC	1 cut(s)	759
BmtI	GCTAGC	1 cut(s)	512
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
BpmI	CTGGAG	1 cut(s)	235
Bpu14I	TTCGAA	1 cut(s)	826
BpuEI	CTTGAG	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	901
BsaHI	GRCGYC	1 cut(s)	925
BsaJI	CCNNGG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	3 cut(s)	542, 908, 912
Bse1I	ACTGG	1 cut(s)	906
Bse3DI	GCAATG	1 cut(s)	570
Bse8I	GATNNNNATC	1 cut(s)	901
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	2 cut(s)	195, 902
BseJI	GATNNNNATC	1 cut(s)	901
BseLI	CCNNNNNNNGG	3 cut(s)	542, 908, 912
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	2 cut(s)	118, 385
BseNI	ACTGG	1 cut(s)	906
BseRI	GAGGAG	3 cut(s)	71, 126, 727
BseSI	GKGCMC	1 cut(s)	89
BseXI	GCAGC	2 cut(s)	275, 698
Bsh1236I	CGCG	1 cut(s)	438
BshFI	GGCC	3 cut(s)	228, 758, 843
BshNI	GGYRCC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	89
BslI	CCNNNNNNNGG	3 cut(s)	542, 908, 912
BsmAI	GTCTC	2 cut(s)	715, 739
BsmI	GAATGC	2 cut(s)	105, 589
BsnI	GGCC	3 cut(s)	228, 758, 843
Bsp119I	TTCGAA	1 cut(s)	826
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp1407I	TGTACA	2 cut(s)	519, 744
Bsp143I	GATC	1 cut(s)	598
BspACI	CCGC	1 cut(s)	677
BspANI	GGCC	3 cut(s)	228, 758, 843
BspCNI	CTCAG	2 cut(s)	117, 384
BspFNI	CGCG	1 cut(s)	438
BspLI	GGNNCC	1 cut(s)	34
BspMAI	CTGCAG	2 cut(s)	293, 724
BspMI	ACCTGC	1 cut(s)	154
BspOI	GCTAGC	1 cut(s)	512
BspPI	GGATC	1 cut(s)	606
BspT104I	TTCGAA	1 cut(s)	826
BspT107I	GGYRCC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	570
BsrGI	TGTACA	2 cut(s)	519, 744
BsrI	ACTGG	1 cut(s)	906
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	598
BssNI	GRCGYC	1 cut(s)	925
Bst4CI	ACNGT	4 cut(s)	91, 275, 706, 764
Bst6I	CTCTTC	1 cut(s)	9
BstACI	GRCGYC	1 cut(s)	925
BstAUI	TGTACA	2 cut(s)	519, 744
BstBI	TTCGAA	1 cut(s)	826
BstC8I	GCNNGC	5 cut(s)	69, 112, 510, 514, 774
BstDEI	CTNAG	3 cut(s)	104, 371, 890
BstF5I	GGATG	2 cut(s)	195, 902
BstFNI	CGCG	1 cut(s)	438
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	1 cut(s)	601
BstMAI	GTCTC	2 cut(s)	715, 739
BstMBI	GATC	1 cut(s)	598
BstMWI	GCNNNNNNNGC	3 cut(s)	404, 683, 692
BstNSI	RCATGY	1 cut(s)	672
BstSFI	CTRYAG	2 cut(s)	289, 720
BstSLI	GKGCMC	1 cut(s)	89
BstUI	CGCG	1 cut(s)	438
BstV1I	GCAGC	2 cut(s)	275, 698
BstX2I	RGATCY	1 cut(s)	598
BstXI	CCANNNNNNTGG	2 cut(s)	659, 928
BstYI	RGATCY	1 cut(s)	598
BsuI	GTATCC	1 cut(s)	263
BsuRI	GGCC	3 cut(s)	228, 758, 843
BtsCI	GGATG	2 cut(s)	195, 902
BtsI	GCAGTG	2 cut(s)	382, 866
BtsIMutI	CAGTG	6 cut(s)	87, 112, 382, 769, 866, 913
BveI	ACCTGC	1 cut(s)	154
Cac8I	GCNNGC	5 cut(s)	69, 112, 510, 514, 774
CaiI	CAGNNNCTG	1 cut(s)	695
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	2 cut(s)	227, 842
Csp6I	GTAC	4 cut(s)	357, 520, 702, 745
CviAII	CATG	1 cut(s)	669
CviQI	GTAC	4 cut(s)	357, 520, 702, 745
DdeI	CTNAG	3 cut(s)	104, 371, 890
DpnI	GATC	1 cut(s)	600
DpnII	GATC	1 cut(s)	598
DrdI	GACNNNNNNGTC	1 cut(s)	731
DseDI	GACNNNNNNGTC	1 cut(s)	731
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	522
EcoO109I	RGGNCCY	1 cut(s)	227
FaeI	CATG	1 cut(s)	672
FatI	CATG	1 cut(s)	668
FauI	CCCGC	1 cut(s)	670
Fnu4HI	GCNGC	2 cut(s)	289, 687
FokI	GGATG	2 cut(s)	202, 889
Fsp4HI	GCNGC	2 cut(s)	289, 687
FspBI	CTAG	2 cut(s)	509, 810
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	2 cut(s)	289, 687
GsuI	CTGGAG	1 cut(s)	235
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	3 cut(s)	228, 758, 843
HhaI	GCGC	1 cut(s)	116
Hin1I	GRCGYC	1 cut(s)	925
Hin1II	CATG	1 cut(s)	672
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	2 cut(s)	87, 576
Hpy188I	TCNGA	2 cut(s)	331, 348
Hpy188III	TCNNGA	5 cut(s)	140, 148, 214, 577, 929
Hpy8I	GTNNAC	2 cut(s)	87, 576
HpyAV	CCTTC	3 cut(s)	39, 497, 827
HpyCH4III	ACNGT	4 cut(s)	91, 275, 706, 764
HpyCH4IV	ACGT	1 cut(s)	925
HpyCH4V	TGCA	9 cut(s)	87, 163, 291, 461, 563, 686, 722, 772, 859
HpyF10VI	GCNNNNNNNGC	3 cut(s)	404, 683, 692
HpyF3I	CTNAG	3 cut(s)	104, 371, 890
HpySE526I	ACGT	1 cut(s)	925
Hsp92I	GRCGYC	1 cut(s)	925
Hsp92II	CATG	1 cut(s)	672
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	1 cut(s)	598
LmnI	GCTCC	1 cut(s)	692
Lsp1109I	GCAGC	2 cut(s)	275, 698
LweI	GCATC	1 cut(s)	759
MaeI	CTAG	2 cut(s)	509, 810
MaeII	ACGT	1 cut(s)	925
MaeIII	GTNAC	1 cut(s)	664
MalI	GATC	1 cut(s)	600
MboI	GATC	1 cut(s)	598
MboII	GAAGA	4 cut(s)	26, 54, 647, 944
MfeI	CAATTG	1 cut(s)	645
MflI	RGATCY	1 cut(s)	598
MhlI	GDGCHC	1 cut(s)	89
MluCI	AATT	4 cut(s)	174, 260, 645, 828
MmeI	TCCRAC	1 cut(s)	676
MnlI	CCTC	9 cut(s)	23, 31, 49, 147, 239, 391, 748, 774, 905
MseI	TTAA	6 cut(s)	156, 168, 177, 315, 882, 952
MslI	CAYNNNNRTG	1 cut(s)	884
MunI	CAATTG	1 cut(s)	645
Mva1269I	GAATGC	2 cut(s)	105, 589
MvnI	CGCG	1 cut(s)	438
MwoI	GCNNNNNNNGC	3 cut(s)	404, 683, 692
NdeII	GATC	1 cut(s)	598
NheI	GCTAGC	1 cut(s)	508
NlaIII	CATG	1 cut(s)	672
NlaIV	GGNNCC	1 cut(s)	34
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	664
NspI	RCATGY	1 cut(s)	672
NspV	TTCGAA	1 cut(s)	826
PciI	ACATGT	1 cut(s)	668
PctI	GAATGC	2 cut(s)	105, 589
PflMI	CCANNNNNTGG	1 cut(s)	908
PkrI	GCNGC	2 cut(s)	290, 688
PscI	ACATGT	1 cut(s)	668
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	2 cut(s)	227, 842
PstI	CTGCAG	2 cut(s)	293, 724
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	598
RsaI	GTAC	4 cut(s)	358, 521, 703, 746
RsaNI	GTAC	4 cut(s)	357, 520, 702, 745
RseI	CAYNNNNRTG	1 cut(s)	884
SaqAI	TTAA	6 cut(s)	156, 168, 177, 315, 882, 952
SatI	GCNGC	2 cut(s)	289, 687
Sau3AI	GATC	1 cut(s)	598
Sau96I	GGNCC	2 cut(s)	227, 842
SduI	GDGCHC	1 cut(s)	89
SfaNI	GCATC	1 cut(s)	759
SfcI	CTRYAG	2 cut(s)	289, 720
SfuI	TTCGAA	1 cut(s)	826
SmiMI	CAYNNNNRTG	1 cut(s)	884
SmlI	CTYRAG	1 cut(s)	387
SmoI	CTYRAG	1 cut(s)	387
Sse9I	AATT	4 cut(s)	174, 260, 645, 828
SsiI	CCGC	1 cut(s)	677
SspI	AATATT	1 cut(s)	730
SspMI	CTAG	2 cut(s)	509, 810
TaaI	ACNGT	4 cut(s)	91, 275, 706, 764
TaiI	ACGT	1 cut(s)	928
TaqI	TCGA	2 cut(s)	547, 826
TasI	AATT	4 cut(s)	174, 260, 645, 828
TatI	WGTACW	2 cut(s)	519, 744
Tru1I	TTAA	6 cut(s)	156, 168, 177, 315, 882, 952
Tru9I	TTAA	6 cut(s)	156, 168, 177, 315, 882, 952
TscAI	CASTG	6 cut(s)	94, 112, 382, 769, 866, 913
TseFI	GTSAC	1 cut(s)	664
TseI	GCWGC	2 cut(s)	288, 686
Tsp45I	GTSAC	1 cut(s)	664
TspDTI	ATGAA	2 cut(s)	321, 611
TspRI	CASTG	6 cut(s)	94, 112, 382, 769, 866, 913
Van91I	CCANNNNNTGG	1 cut(s)	908
VneI	GTGCAC	1 cut(s)	85
XceI	RCATGY	1 cut(s)	672
XspI	CTAG	2 cut(s)	509, 810
ZraI	GACGTC	1 cut(s)	926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.