Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012350

Physical Location & Seq

Genomic Coordinates Forward (+)

17076936 .. 17079339

Gene Structure 2404 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g13510.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGAGAGGGGTTGAAGGAAGATTTTGTGAGGAATTTTCACCTGCATATTATGGGCTGTGTACTGTTGGAGGAATGCTCAGTGCTGGCGCTACCCATCTCGCAATCACGCCACTTGATGTCCTGAAAGTTAATATGCAGGTAAATCCAATTAAATATAACAGGATGGGTACAGGGTTTTCTACTCTTTGGAAAGAACAAGGCCCTTCTTCTCTTTGGAGAGGTTGGTCTGGAAAGCTTTTTGGATATGGTGTTCAGGGTGGCTGCAGATTTGGTCTCTACGAATACTTTAAGAAGCTTTACTCAGATGCATTGATAGATCATAACAAGAGTACCATATTCTTCCTCAGCAGTGCATCTGCTCAAGTATTTGCTGATGTGGCTCTCTGTCCTTTTGAAGCCGTCAAAGTCCGAGTTCAAACACAGCCCTACTTTGCAAAGGGCTTGGTTGATGGGTTTCCAAAGTTATACTCAGCTGAAGGGATAACTGGTTTTTACAGAGGACTTTTACCACTATGGGGTCGAAATCTTCCATTCTCGATGATAATGTTCACGACGTTTGAGCACTCAGTTGATCTGATTTATCGCAAGTTTATGCAAAGGAGGAAAGAGGAATGCTCAAGAGCCCAACAGCTTGGCGTGACATGTTTAGCGGCCTATGCTGCAGGAGCTGTTGGTACCGTTGTCTCCAACCCTGCAGACAACATTGTTTCCTCTCTTTACAATAAAAAGGCTGTCAATGTGATGCAGGCTGTGAAGAACATTGGGCTCGTTAATCTGTTTACTCGAAGTCTTCCTGTTCGAATTACACTTGTCGGCCCTGTTGTTACCTTGCAGTGGTTTTTCTATGACAGCATCAAAGTTCTTTGTGGATTGCCATCTAGTGGAGGGCTTTCCGGGCATCTTGAAGAAGCTAACCTATCAGCTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0098656 GO:0098660 GO:0098661

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

310

Amino Acids

34.04

Weight (kDa)

9.17

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17270
fragaria_vesca	FvH4_2g16870 FvH4_2g16870
malus_domestica	MD05G1139900.v1.1 MD10G1142200.v1.1
prunus_persica	Prupe.8G180700_v2.0.a1 Prupe.8G180700_v2.0.a1
pyrus_communis	pycom05g13510 pycom10g12190
rosa_chinensis	RchiOBHm_Chr6g0281001
rosa_laevigata	RLG00000013008
rosa_multiflora	Rmu_sc0012869.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187400
rosa_rugosa	Rorug06G0137800
rosa_samantha	Rh6AG250000 Rh6BG252200 Rh6CG252700 Rh6DG244400
rosa_wichuraiana	Rw6G021620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	49
Acc36I	ACCTGC	2 cut(s)	49, 127
Acc65I	GGTACC	1 cut(s)	674
AccB1I	GGYRCC	1 cut(s)	674
AccB7I	CCANNNNNTGG	1 cut(s)	881
AciI	CCGC	1 cut(s)	650
AcsI	RAATTY	1 cut(s)	32
AcuI	CTGAAG	1 cut(s)	495
AfaI	GTAC	4 cut(s)	61, 169, 331, 676
AfiI	CCNNNNNNNGG	3 cut(s)	515, 834, 881
AflIII	ACRYGT	1 cut(s)	641
AgsI	TTSAA	4 cut(s)	14, 395, 416, 905
AloI	GAACNNNNNNTCC	2 cut(s)	234, 266
AluBI	AGCT	7 cut(s)	235, 295, 473, 631, 668, 911, 923
AluI	AGCT	7 cut(s)	235, 295, 473, 631, 668, 911, 923
Alw21I	GWGCWC	1 cut(s)	564
Alw26I	GTCTC	2 cut(s)	278, 688
AlwNI	CAGNNNCTG	1 cut(s)	668
AoxI	GGCC	3 cut(s)	199, 651, 814
ApeKI	GCWGC	2 cut(s)	261, 659
ApoI	RAATTY	1 cut(s)	32
Asp718I	GGTACC	1 cut(s)	674
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	2 cut(s)	200, 815
AsuC2I	CCSGG	1 cut(s)	895
AsuHPI	GGTGA	1 cut(s)	30
AsuII	TTCGAA	1 cut(s)	799
BaeI	ACNNNNGTAYC	4 cut(s)	313, 346, 666, 699
BanI	GGYRCC	1 cut(s)	674
BanII	GRGCYC	2 cut(s)	625, 768
BbsI	GAAGAC	1 cut(s)	782
Bbv12I	GWGCWC	1 cut(s)	564
BbvCI	CCTCAGC	1 cut(s)	344
BbvI	GCAGC	2 cut(s)	248, 646
BccI	CCATC	4 cut(s)	102, 157, 443, 883
BceAI	ACGGC	1 cut(s)	383
BcnI	CCSGG	1 cut(s)	895
BcoDI	GTCTC	2 cut(s)	278, 688
BfaI	CTAG	1 cut(s)	879
BfmI	CTRYAG	3 cut(s)	262, 660, 693
BfoI	RGCGCY	1 cut(s)	90
BfuAI	ACCTGC	2 cut(s)	49, 127
BisI	GCNGC	3 cut(s)	262, 651, 660
BlsI	GCNGC	3 cut(s)	263, 652, 661
Bme1390I	CCNGG	1 cut(s)	895
BmgT120I	GGNCC	2 cut(s)	200, 815
BmiI	GGNNCC	1 cut(s)	676
BmrFI	CCNGG	1 cut(s)	895
BmsI	GCATC	5 cut(s)	295, 362, 732, 861, 907
BpiI	GAAGAC	1 cut(s)	782
BplI	GAGNNNNNCTC	4 cut(s)	60, 92, 599, 631
Bpu10I	CCTNAGC	1 cut(s)	344
Bpu14I	TTCGAA	1 cut(s)	799
BpuEI	CTTGAG	2 cut(s)	345, 601
BpuMI	CCSGG	1 cut(s)	895
BsaBI	GATNNNNATC	1 cut(s)	874
BsaI	GGTCTC	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	3 cut(s)	515, 834, 881
Bse1I	ACTGG	1 cut(s)	490
Bse8I	GATNNNNATC	1 cut(s)	874
BseGI	GGATG	1 cut(s)	168
BseJI	GATNNNNATC	1 cut(s)	874
BseLI	CCNNNNNNNGG	3 cut(s)	515, 834, 881
BseMII	CTCAG	5 cut(s)	91, 315, 358, 483, 579
BseNI	ACTGG	1 cut(s)	490
BseXI	GCAGC	2 cut(s)	248, 646
BshFI	GGCC	3 cut(s)	201, 653, 816
BshNI	GGYRCC	1 cut(s)	674
BsiHKAI	GWGCWC	1 cut(s)	564
BsiSI	CCGG	1 cut(s)	894
BslI	CCNNNNNNNGG	3 cut(s)	515, 834, 881
BsmAI	GTCTC	2 cut(s)	278, 688
BsmI	GAATGC	2 cut(s)	78, 617
BsnI	GGCC	3 cut(s)	201, 653, 816
Bso31I	GGTCTC	1 cut(s)	278
Bsp119I	TTCGAA	1 cut(s)	799
Bsp1286I	GDGCHC	3 cut(s)	564, 625, 768
Bsp143I	GATC	2 cut(s)	316, 571
BspACI	CCGC	1 cut(s)	650
BspANI	GGCC	3 cut(s)	201, 653, 816
BspCNI	CTCAG	5 cut(s)	90, 314, 357, 482, 578
BspLI	GGNNCC	1 cut(s)	676
BspMAI	CTGCAG	3 cut(s)	266, 664, 697
BspMI	ACCTGC	2 cut(s)	49, 127
BspT104I	TTCGAA	1 cut(s)	799
BspT107I	GGYRCC	1 cut(s)	674
BspTNI	GGTCTC	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	490
BssMI	GATC	2 cut(s)	316, 571
Bst4CI	ACNGT	2 cut(s)	64, 679
BstBI	TTCGAA	1 cut(s)	799
BstC8I	GCNNGC	2 cut(s)	85, 747
BstDEI	CTNAG	5 cut(s)	77, 301, 344, 469, 565
BstF5I	GGATG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	2 cut(s)	319, 574
BstMAI	GTCTC	2 cut(s)	278, 688
BstMBI	GATC	2 cut(s)	316, 571
BstMWI	GCNNNNNNNGC	5 cut(s)	377, 656, 659, 665, 895
BstNSI	RCATGY	1 cut(s)	645
BstSCI	CCNGG	1 cut(s)	893
BstSFI	CTRYAG	3 cut(s)	262, 660, 693
BstV1I	GCAGC	2 cut(s)	248, 646
BstV2I	GAAGAC	1 cut(s)	782
BstXI	CCANNNNNNTGG	1 cut(s)	632
BsuRI	GGCC	3 cut(s)	201, 653, 816
BtsCI	GGATG	1 cut(s)	168
BtsI	GCAGTG	2 cut(s)	355, 839
BtsIMutI	CAGTG	3 cut(s)	85, 355, 839
BveI	ACCTGC	2 cut(s)	49, 127
Cac8I	GCNNGC	2 cut(s)	85, 747
CaiI	CAGNNNCTG	1 cut(s)	668
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	200, 815
Csp6I	GTAC	4 cut(s)	60, 168, 330, 675
CviAII	CATG	1 cut(s)	642
CviQI	GTAC	4 cut(s)	60, 168, 330, 675
DdeI	CTNAG	5 cut(s)	77, 301, 344, 469, 565
DpnI	GATC	2 cut(s)	318, 573
DpnII	GATC	2 cut(s)	316, 571
Eco24I	GRGCYC	2 cut(s)	625, 768
Eco31I	GGTCTC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	495
EcoO109I	RGGNCCY	1 cut(s)	200
EcoT22I	ATGCAT	1 cut(s)	310
EcoT38I	GRGCYC	2 cut(s)	625, 768
FaeI	CATG	1 cut(s)	645
FatI	CATG	1 cut(s)	641
Fnu4HI	GCNGC	3 cut(s)	262, 651, 660
FokI	GGATG	1 cut(s)	175
FriOI	GRGCYC	2 cut(s)	625, 768
Fsp4HI	GCNGC	3 cut(s)	262, 651, 660
FspBI	CTAG	1 cut(s)	879
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	3 cut(s)	262, 651, 660
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	3 cut(s)	201, 653, 816
HapII	CCGG	1 cut(s)	894
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	1 cut(s)	645
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HindIII	AAGCTT	2 cut(s)	233, 293
HpaII	CCGG	1 cut(s)	894
HphI	GGTGA	1 cut(s)	30
Hpy166II	GTNNAC	3 cut(s)	60, 549, 780
Hpy188I	TCNGA	3 cut(s)	304, 410, 576
Hpy188III	TCNNGA	6 cut(s)	121, 228, 535, 550, 618, 902
Hpy8I	GTNNAC	3 cut(s)	60, 549, 780
Hpy99I	CGWCG	1 cut(s)	556
HpyAV	CCTTC	3 cut(s)	8, 213, 470
HpyCH4III	ACNGT	2 cut(s)	64, 679
HpyCH4IV	ACGT	1 cut(s)	554
HpyF10VI	GCNNNNNNNGC	5 cut(s)	377, 656, 659, 665, 895
HpyF3I	CTNAG	5 cut(s)	77, 301, 344, 469, 565
HpySE526I	ACGT	1 cut(s)	554
Hsp92II	CATG	1 cut(s)	645
HspAI	GCGC	1 cut(s)	87
KpnI	GGTACC	1 cut(s)	678
Kzo9I	GATC	2 cut(s)	316, 571
LmnI	GCTCC	1 cut(s)	665
Lsp1109I	GCAGC	2 cut(s)	248, 646
LweI	GCATC	5 cut(s)	295, 362, 732, 861, 907
MaeI	CTAG	1 cut(s)	879
MaeII	ACGT	1 cut(s)	554
MaeIII	GTNAC	2 cut(s)	637, 823
MalI	GATC	2 cut(s)	318, 573
MboI	GATC	2 cut(s)	316, 571
MboII	GAAGA	7 cut(s)	30, 198, 331, 518, 766, 782, 917
MhlI	GDGCHC	3 cut(s)	564, 625, 768
MluCI	AATT	3 cut(s)	32, 147, 801
MmeI	TCCRAC	2 cut(s)	46, 711
MnlI	CCTC	9 cut(s)	22, 62, 212, 353, 491, 594, 601, 721, 878
Mph1103I	ATGCAT	1 cut(s)	310
MseI	TTAA	4 cut(s)	129, 150, 288, 771
MspA1I	CMGCKG	2 cut(s)	473, 923
MspI	CCGG	1 cut(s)	894
MspR9I	CCNGG	1 cut(s)	895
Mva1269I	GAATGC	2 cut(s)	78, 617
MwoI	GCNNNNNNNGC	5 cut(s)	377, 656, 659, 665, 895
NciI	CCSGG	1 cut(s)	895
NdeII	GATC	2 cut(s)	316, 571
NlaIII	CATG	1 cut(s)	645
NlaIV	GGNNCC	1 cut(s)	676
NmuCI	GTSAC	1 cut(s)	637
NsiI	ATGCAT	1 cut(s)	310
NspI	RCATGY	1 cut(s)	645
NspV	TTCGAA	1 cut(s)	799
PaqCI	CACCTGC	1 cut(s)	49
PciI	ACATGT	1 cut(s)	641
PctI	GAATGC	2 cut(s)	78, 617
PflMI	CCANNNNNTGG	1 cut(s)	881
PkrI	GCNGC	3 cut(s)	263, 652, 661
PscI	ACATGT	1 cut(s)	641
PspN4I	GGNNCC	1 cut(s)	676
PspPI	GGNCC	2 cut(s)	200, 815
PstI	CTGCAG	3 cut(s)	266, 664, 697
PstNI	CAGNNNCTG	1 cut(s)	668
PvuII	CAGCTG	2 cut(s)	473, 923
RsaI	GTAC	4 cut(s)	61, 169, 331, 676
RsaNI	GTAC	4 cut(s)	60, 168, 330, 675
SaqAI	TTAA	4 cut(s)	129, 150, 288, 771
SatI	GCNGC	3 cut(s)	262, 651, 660
Sau3AI	GATC	2 cut(s)	316, 571
Sau96I	GGNCC	2 cut(s)	200, 815
ScrFI	CCNGG	1 cut(s)	895
SduI	GDGCHC	3 cut(s)	564, 625, 768
SfaNI	GCATC	5 cut(s)	295, 362, 732, 861, 907
SfcI	CTRYAG	3 cut(s)	262, 660, 693
SfuI	TTCGAA	1 cut(s)	799
SmlI	CTYRAG	2 cut(s)	360, 616
SmoI	CTYRAG	2 cut(s)	360, 616
Sse9I	AATT	3 cut(s)	32, 147, 801
SsiI	CCGC	1 cut(s)	650
SspMI	CTAG	1 cut(s)	879
StyD4I	CCNGG	1 cut(s)	893
TaaI	ACNGT	2 cut(s)	64, 679
TaiI	ACGT	1 cut(s)	557
TaqI	TCGA	4 cut(s)	520, 536, 784, 799
TasI	AATT	3 cut(s)	32, 147, 801
TatI	WGTACW	1 cut(s)	59
TauI	GCSGC	1 cut(s)	653
Tru1I	TTAA	4 cut(s)	129, 150, 288, 771
Tru9I	TTAA	4 cut(s)	129, 150, 288, 771
TscAI	CASTG	3 cut(s)	85, 355, 839
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	2 cut(s)	261, 659
Tsp45I	GTSAC	1 cut(s)	637
TspRI	CASTG	3 cut(s)	85, 355, 839
Van91I	CCANNNNNTGG	1 cut(s)	881
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	1 cut(s)	645
XspI	CTAG	1 cut(s)	879
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.