AT2G18500

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015083
Physical Location & Seq
Forward (+)
8026957 .. 8028273
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G18500.1

Sequence Viewer

Length: 948 bp
ATGACGAAACGTTTCAAATTAAAGATTTCAAGAATCCTCTCATTCAAATCTTGCCGTTTAAAAGATCCTTCTTCTCTTCCTTTTAATCCTGTTTCTTCAAGTCTCCGACGTACTTCTCCACTGGTTAACTCCTCCGCCGACGTCACCACCGTGCCGCAACGTCGCCGTTCTTCTTTCAGACTACACGTTTTAACTGTGTTTGGCTGCGGACGCTCGTCCACGCCGTTGGATGTTGATCTGAGAAACTCACCGGTGTTATCTCCGCCGCAAACGCCGACGTTTCAGTGGGAAAGTGAAGGGAAGTGGCACGTGATTGCTCAAGTCACTGAAGAAGAATACGAAACGCCTCGTCGGAAAATATACAACGGTGGGTCGGAGAAAGATAATCGCCGGCGTTTAAAGAAGAAGGAGAAATCAAACTCTCGGCGGCGAGGGAGCATTTCCTCCGCCGAAGAAGAGACTGATAGAGAGAGTCTCTTACCATCTTCTACAAACCTCTCGCCGGAATATTCCTCTTCCGAGCTACCGCGTGTCACAAGACGTCCGAGACAACTTCTCAAGAAGGCGGTGATCGAGGAAGAAAGTGAATCATCATCACCGCCACCGTCTCCGGCGAGACTGTCTTCGTTTGTGCAGAGATTAATGCCGTGTACGATGGCGGCGGCGGTTATGGTGGAAGGAGTGGCGGTGGTGAAGAAATCGGAGGATCCATACGAAGATTTTAAAGGATCAATGATGGAGATGATAGTAGAGAAGAAGATGTTTGAAGTAGCTGAGCTTGAACAGCTTCTTAGTTGCTTCCTATCGCTAAACGCGAAACGCCACCACCGCGCGATTGTAAGAGCGTTTTCAGAGATTTGGGTTGCTTTGTTCTCCGGTGGTAGTGGTGGTGGTCGGAGATCGTCCTCCTTCTCGAGTGTTCGACTCTCAGACTACGATGAGTGTTAA

Protein Analysis

315

Amino Acids

35.54

Weight (kDa)

9.72

Isoelectric Point (pI)

85.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 234 - 291 7.3e-26 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18500
fragaria_vesca FvH4_1g13640
malus_domestica MD02G1151100.v1.1 MD15G1265600.v1.1
prunus_persica Prupe.7G152000_v2.0.a1
pyrus_communis pycom15g23130
rosa_chinensis RchiOBHm_Chr2g0101991
rosa_laevigata RLG00000017124
rosa_multiflora Rmu_co8434933.1_g000001
rosa_roxburghii Rroxscaffold_2G00140860
rosa_rugosa Rorug02G0103700
rosa_samantha Rh2AG151800 Rh2BG157200 Rh2CG157200 Rh2DG157300
rosa_wichuraiana Rw2G011850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 144, 544
AccII CGCG 4 cut(s) 529, 815, 831, 833
AclI AACGTT 1 cut(s) 10
AclWI GGATC 4 cut(s) 59, 701, 714, 736
AcuI CTGAAG 1 cut(s) 348
AcvI CACGTG 1 cut(s) 310
AcyI GRCGYC 2 cut(s) 141, 541
AfaI GTAC 2 cut(s) 112, 652
AfiI CCNNNNNNNGG 1 cut(s) 502
AflIII ACRYGT 1 cut(s) 184
AgeI ACCGGT 1 cut(s) 250
AgsI TTSAA 6 cut(s) 16, 30, 46, 99, 767, 782
AleI CACNNNNGTG 1 cut(s) 149
AluBI AGCT 4 cut(s) 523, 773, 778, 787
AluI AGCT 4 cut(s) 523, 773, 778, 787
Alw26I GTCTC 6 cut(s) 107, 452, 479, 541, 610, 612
AlwI GGATC 4 cut(s) 59, 701, 714, 736
Ama87I CYCGRG 1 cut(s) 913
ApeKI GCWGC 1 cut(s) 204
AseI ATTAAT 1 cut(s) 641
AsiGI ACCGGT 1 cut(s) 250
Asp700I GAANNNNTTC 2 cut(s) 11, 786
AspLEI GCGC 1 cut(s) 833
AsuHPI GGTGA 5 cut(s) 136, 240, 580, 588, 703
AvaI CYCGRG 1 cut(s) 913
BamHI GGATCC 1 cut(s) 706
BbrPI CACGTG 1 cut(s) 310
BbsI GAAGAC 1 cut(s) 615
BbvI GCAGC 1 cut(s) 191
BccI CCATC 3 cut(s) 490, 649, 730
BceAI ACGGC 4 cut(s) 39, 150, 208, 631
BcoDI GTCTC 6 cut(s) 107, 452, 479, 541, 610, 612
BisI GCNGC 6 cut(s) 155, 205, 266, 428, 660, 663
BlpI GCTNAGC 1 cut(s) 774
BlsI GCNGC 6 cut(s) 156, 206, 267, 429, 661, 664
BmeT110I CYCGRG 1 cut(s) 913
BmiI GGNNCC 1 cut(s) 708
BoxI GACNNNNGTC 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 615
BplI GAGNNNNNCTC 2 cut(s) 459, 491
Bpu1102I GCTNAGC 1 cut(s) 774
BpuEI CTTGAG 2 cut(s) 303, 542
BsaAI YACGTR 1 cut(s) 310
BsaBI GATNNNNATC 1 cut(s) 234
BsaHI GRCGYC 2 cut(s) 141, 541
BsaWI WCCGGW 2 cut(s) 250, 875
BsaXI ACNNNNNCTCC 2 cut(s) 672, 702
Bsc4I CCNNNNNNNGG 1 cut(s) 502
Bse118I RCCGGY 2 cut(s) 250, 390
Bse1I ACTGG 1 cut(s) 126
Bse8I GATNNNNATC 1 cut(s) 234
BseGI GGATG 1 cut(s) 235
BseJI GATNNNNATC 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 502
BseMII CTCAG 3 cut(s) 230, 765, 942
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 191
BsgI GTGCAG 1 cut(s) 653
Bsh1236I CGCG 4 cut(s) 529, 815, 831, 833
BshTI ACCGGT 1 cut(s) 250
BsiHKCI CYCGRG 1 cut(s) 913
BsiSI CCGG 5 cut(s) 251, 391, 503, 611, 876
BslI CCNNNNNNNGG 1 cut(s) 502
BsmAI GTCTC 6 cut(s) 107, 452, 479, 541, 610, 612
BsmBI CGTCTC 1 cut(s) 612
BsoBI CYCGRG 1 cut(s) 913
Bsp143I GATC 6 cut(s) 64, 235, 570, 706, 728, 899
Bsp1720I GCTNAGC 1 cut(s) 774
BspCNI CTCAG 3 cut(s) 231, 766, 941
BspFNI CGCG 4 cut(s) 529, 815, 831, 833
BspLI GGNNCC 1 cut(s) 708
BspPI GGATC 4 cut(s) 59, 701, 714, 736
BsrFI RCCGGY 2 cut(s) 250, 390
BsrI ACTGG 1 cut(s) 126
BssAI RCCGGY 2 cut(s) 250, 390
BssMI GATC 6 cut(s) 64, 235, 570, 706, 728, 899
BssNI GRCGYC 2 cut(s) 141, 541
Bst4CI ACNGT 5 cut(s) 151, 196, 368, 606, 621
Bst6I CTCTTC 3 cut(s) 81, 450, 520
BstACI GRCGYC 2 cut(s) 141, 541
BstBAI YACGTR 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 392
BstDEI CTNAG 4 cut(s) 239, 774, 791, 928
BstF5I GGATG 1 cut(s) 235
BstFNI CGCG 4 cut(s) 529, 815, 831, 833
BstHHI GCGC 1 cut(s) 833
BstKTI GATC 6 cut(s) 67, 238, 573, 709, 731, 902
BstMAI GTCTC 6 cut(s) 107, 452, 479, 541, 610, 612
BstMBI GATC 6 cut(s) 64, 235, 570, 706, 728, 899
BstMWI GCNNNNNNNGC 4 cut(s) 210, 271, 784, 828
BstPAI GACNNNNGTC 1 cut(s) 214
BstUI CGCG 4 cut(s) 529, 815, 831, 833
BstV1I GCAGC 1 cut(s) 191
BstV2I GAAGAC 1 cut(s) 615
BstX2I RGATCY 2 cut(s) 64, 706
BstXI CCANNNNNNTGG 1 cut(s) 226
BstYI RGATCY 2 cut(s) 64, 706
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 3 cut(s) 119, 290, 324
Cac8I GCNNGC 1 cut(s) 392
CfoI GCGC 1 cut(s) 833
Cfr10I RCCGGY 2 cut(s) 250, 390
CseI GACGC 1 cut(s) 219
Csp6I GTAC 2 cut(s) 111, 651
CspAI ACCGGT 1 cut(s) 250
CviJI RGCY 5 cut(s) 204, 523, 773, 778, 787
CviKI_1 RGCY 5 cut(s) 204, 523, 773, 778, 787
CviQI GTAC 2 cut(s) 111, 651
DdeI CTNAG 4 cut(s) 239, 774, 791, 928
DpnI GATC 6 cut(s) 66, 237, 572, 708, 730, 901
DpnII GATC 6 cut(s) 64, 235, 570, 706, 728, 899
DraI TTTAAA 3 cut(s) 60, 399, 724
Eam1104I CTCTTC 3 cut(s) 81, 450, 520
EarI CTCTTC 3 cut(s) 81, 450, 520
EciI GGCGGA 3 cut(s) 124, 252, 436
Eco57I CTGAAG 1 cut(s) 348
Eco72I CACGTG 1 cut(s) 310
Eco88I CYCGRG 1 cut(s) 913
Esp3I CGTCTC 1 cut(s) 612
FaiI YATR 3 cut(s) 361, 671, 712
Fnu4HI GCNGC 6 cut(s) 155, 205, 266, 428, 660, 663
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 6 cut(s) 155, 205, 266, 428, 660, 663
GlaI GCGC 1 cut(s) 832
GluI GCNGC 6 cut(s) 155, 205, 266, 428, 660, 663
HapII CCGG 5 cut(s) 251, 391, 503, 611, 876
HgaI GACGC 1 cut(s) 219
HhaI GCGC 1 cut(s) 833
Hin1I GRCGYC 2 cut(s) 141, 541
Hin6I GCGC 1 cut(s) 831
HinP1I GCGC 1 cut(s) 831
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 4 cut(s) 33, 472, 587, 924
HpaI GTTAAC 1 cut(s) 127
HpaII CCGG 5 cut(s) 251, 391, 503, 611, 876
HphI GGTGA 5 cut(s) 136, 240, 580, 588, 703
Hpy166II GTNNAC 3 cut(s) 127, 219, 651
Hpy188III TCNNGA 3 cut(s) 30, 559, 913
Hpy8I GTNNAC 3 cut(s) 127, 219, 651
Hpy99I CGWCG 5 cut(s) 111, 143, 165, 280, 354
HpyAV CCTTC 6 cut(s) 78, 290, 400, 556, 671, 919
HpyCH4III ACNGT 5 cut(s) 151, 196, 368, 606, 621
HpyCH4IV ACGT 8 cut(s) 10, 109, 141, 160, 186, 278, 309, 541
HpyCH4V TGCA 1 cut(s) 634
HpyF10VI GCNNNNNNNGC 4 cut(s) 210, 271, 784, 828
HpyF3I CTNAG 4 cut(s) 239, 774, 791, 928
HpySE526I ACGT 8 cut(s) 10, 109, 141, 160, 186, 278, 309, 541
Hsp92I GRCGYC 2 cut(s) 141, 541
HspAI GCGC 1 cut(s) 831
KroI GCCGGC 1 cut(s) 390
KroNI GCCGGC 1 cut(s) 392
KspAI GTTAAC 1 cut(s) 127
Kzo9I GATC 6 cut(s) 64, 235, 570, 706, 728, 899
LmnI GCTCC 1 cut(s) 435
LpnPI CCDG 7 cut(s) 102, 107, 264, 404, 516, 624, 889
Lsp1109I GCAGC 1 cut(s) 191
MaeII ACGT 8 cut(s) 10, 109, 141, 160, 186, 278, 309, 541
MaeIII GTNAC 3 cut(s) 142, 322, 532
MalI GATC 6 cut(s) 66, 237, 572, 708, 730, 901
MboI GATC 6 cut(s) 64, 235, 570, 706, 728, 899
MflI RGATCY 2 cut(s) 64, 706
MluCI AATT 1 cut(s) 17
MlyI GAGTC 2 cut(s) 481, 918
MmeI TCCRAC 5 cut(s) 130, 207, 332, 354, 875
MreI CGCCGGCG 1 cut(s) 390
MroNI GCCGGC 1 cut(s) 390
MroXI GAANNNNTTC 2 cut(s) 11, 786
MseI TTAA 9 cut(s) 20, 59, 84, 126, 191, 398, 641, 723, 946
MslI CAYNNNNRTG 1 cut(s) 149
MspI CCGG 5 cut(s) 251, 391, 503, 611, 876
MvnI CGCG 4 cut(s) 529, 815, 831, 833
MwoI GCNNNNNNNGC 4 cut(s) 210, 271, 784, 828
NaeI GCCGGC 1 cut(s) 392
NdeII GATC 6 cut(s) 64, 235, 570, 706, 728, 899
NgoMIV GCCGGC 1 cut(s) 390
NlaIV GGNNCC 1 cut(s) 708
NmeAIII GCCGAG 1 cut(s) 403
NmuCI GTSAC 3 cut(s) 142, 322, 532
OliI CACNNNNGTG 1 cut(s) 149
PaeR7I CTCGAG 1 cut(s) 913
PcsI WCGNNNNNNNCGW 3 cut(s) 147, 221, 812
PdiI GCCGGC 1 cut(s) 392
PdmI GAANNNNTTC 2 cut(s) 11, 786
PfeI GAWTC 2 cut(s) 33, 587
PinAI ACCGGT 1 cut(s) 250
PkrI GCNGC 6 cut(s) 156, 206, 267, 429, 661, 664
PleI GAGTC 2 cut(s) 480, 918
PmaCI CACGTG 1 cut(s) 310
PmlI CACGTG 1 cut(s) 310
PpsI GAGTC 2 cut(s) 480, 918
Ppu21I YACGTR 1 cut(s) 310
PshAI GACNNNNGTC 1 cut(s) 214
PshBI ATTAAT 1 cut(s) 641
Psp1406I AACGTT 1 cut(s) 10
PspCI CACGTG 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 708
PsuI RGATCY 2 cut(s) 64, 706
RsaI GTAC 2 cut(s) 112, 652
RsaNI GTAC 2 cut(s) 111, 651
RseI CAYNNNNRTG 1 cut(s) 149
SaqAI TTAA 9 cut(s) 20, 59, 84, 126, 191, 398, 641, 723, 946
SatI GCNGC 6 cut(s) 155, 205, 266, 428, 660, 663
Sau3AI GATC 6 cut(s) 64, 235, 570, 706, 728, 899
SchI GAGTC 2 cut(s) 481, 918
Sfr274I CTCGAG 1 cut(s) 913
SgrAI CRCCGGYG 2 cut(s) 250, 390
SlaI CTCGAG 1 cut(s) 913
SmiMI CAYNNNNRTG 1 cut(s) 149
SmlI CTYRAG 3 cut(s) 318, 557, 913
SmoI CTYRAG 3 cut(s) 318, 557, 913
Sse9I AATT 1 cut(s) 17
SspI AATATT 1 cut(s) 509
TaaI ACNGT 5 cut(s) 151, 196, 368, 606, 621
TaiI ACGT 8 cut(s) 13, 112, 144, 163, 189, 281, 312, 544
TaqI TCGA 3 cut(s) 573, 914, 922
TasI AATT 1 cut(s) 17
TauI GCSGC 5 cut(s) 157, 268, 430, 662, 665
TfiI GAWTC 2 cut(s) 33, 587
Tru1I TTAA 9 cut(s) 20, 59, 84, 126, 191, 398, 641, 723, 946
Tru9I TTAA 9 cut(s) 20, 59, 84, 126, 191, 398, 641, 723, 946
TscAI CASTG 3 cut(s) 126, 290, 331
TseFI GTSAC 3 cut(s) 142, 322, 532
TseI GCWGC 1 cut(s) 204
Tsp45I GTSAC 3 cut(s) 142, 322, 532
TspRI CASTG 3 cut(s) 126, 290, 331
VspI ATTAAT 1 cut(s) 641
XhoI CTCGAG 1 cut(s) 913
XmnI GAANNNNTTC 2 cut(s) 11, 786
ZraI GACGTC 2 cut(s) 142, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.