RchiOBHm_Chr2g0101991

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0015083
Physical Location & Seq
Forward (+)
13410693 .. 13412206
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47650

Sequence Viewer

Length: 1005 bp
ATGGCGAAACGTTTCAGGCTCCGGATATGCAGGGTTATTCCCTCCTTCCAATCCTGCCGTTCAAAAGACCCCGCTTCTCTCCCTGCCAATCCCGTCCCTTCATTTCTCCGACCATCCCCATCACTCAACCACCACCTCACCACCCCACCATCCAAATCCCATCACTCCTCCTCCATCAAACGCCACGTGTCCTCCGCATTCGGCTGCGGCTTCGGAACAAAACCAACCCTTTCCGACGACGACGACCACAGCGGATCATTGCCGCCGGAGCTGTTCGAGTGGGAAAGAGAGGACAAGTGGCACGTGGTCGCCATGGTCAATGAAGACAAAACCCCCCGTCGCAAAATCTACACTTCCTCGGCCTCCGCTGACTCCGACCGCGACGACGCCGTTTCGCTTTCTTTCTCTCCTCCTCCACCTCCGCCTCCTTCCTCGGCGGAGAAGAAGAAAAAACAAAGACTGAGGAAAAAGAAAACAACGACGAGTCGTATGATCCGCTTCAGCACCTCCTCCGCCGAGAGCGGACTCTTCAGCGACGAAGATGAAGAAAACGAAACCCTAGTCTCCTTTTCCACCGACTCCTCCGCCGATATATTCACGCGCCACCTGGCAACGATCCGCGAGACGACCCCTAGGCGGAGGAAGAAGACGAAGAGTAAAGCTAAACGCAGCGTTTCAAGGAAGAGTGTTGAGTTTGAGTCCCCTAGGCTGTCGGTGTTTCAGAGGCTTATACCGTGCAGTGTCGACGGGAAGGTTAGGGAGAGTTTCGCGGTGGTGAAGAAGTCGGAGGATCCGTACGAGGACTTCAAGAGGTCGATGATGGAGATGATATTGGAGAAGCAGATGTTTCATGAGAAAGAACTGGAGCAGTTGCTGCACTGCTTCTTGTCTTTGAATGCGAGGGAGCACCATAGGGTCATTGTGCAGGCTTTCTCTGAGATTTGGGAGGGTTTGTTCTGTGGTAGTGCAAGGTCGTCAGGAGCTAGAGTTTCTAGAGCTCTTTAG

Protein Analysis

334

Amino Acids

37.9

Weight (kDa)

9.65

Isoelectric Point (pI)

57.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 262 - 319 2.2e-26 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18500
fragaria_vesca FvH4_1g13640
malus_domestica MD02G1151100.v1.1 MD15G1265600.v1.1
prunus_persica Prupe.7G152000_v2.0.a1
pyrus_communis pycom15g23130
rosa_chinensis RchiOBHm_Chr2g0101991
rosa_laevigata RLG00000017124
rosa_multiflora Rmu_co8434933.1_g000001
rosa_roxburghii Rroxscaffold_2G00140860
rosa_rugosa Rorug02G0103700
rosa_samantha Rh2AG151800 Rh2BG157200 Rh2CG157200 Rh2DG157300
rosa_wichuraiana Rw2G011850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 522
AccI GTMKAC 1 cut(s) 744
AccII CGCG 4 cut(s) 381, 601, 621, 770
AccIII TCCGGA 1 cut(s) 21
AclI AACGTT 1 cut(s) 10
AclWI GGATC 5 cut(s) 262, 487, 610, 785, 798
AcuI CTGAAG 2 cut(s) 484, 514
AcvI CACGTG 2 cut(s) 187, 304
AcyI GRCGYC 1 cut(s) 387
AfaI GTAC 1 cut(s) 797
AfiI CCNNNNNNNGG 1 cut(s) 636
AflIII ACRYGT 1 cut(s) 186
AgsI TTSAA 4 cut(s) 63, 678, 808, 895
AjnI CCWGG 1 cut(s) 606
AloI GAACNNNNNNTCC 2 cut(s) 938, 970
AluBI AGCT 4 cut(s) 271, 662, 983, 998
AluI AGCT 4 cut(s) 271, 662, 983, 998
Alw21I GWGCWC 2 cut(s) 909, 1000
Alw26I GTCTC 2 cut(s) 568, 617
AlwI GGATC 5 cut(s) 262, 487, 610, 785, 798
AlwNI CAGNNNCTG 1 cut(s) 874
Aor13HI TCCGGA 1 cut(s) 21
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 3 cut(s) 204, 669, 874
ArsI GACNNNNNNTTYG 2 cut(s) 546, 578
Asp700I GAANNNNTTC 1 cut(s) 11
AspA2I CCTAGG 2 cut(s) 632, 704
AspLEI GCGC 1 cut(s) 603
AsuHPI GGTGA 2 cut(s) 130, 787
AvrII CCTAGG 2 cut(s) 632, 704
BamHI GGATCC 1 cut(s) 790
BanII GRGCYC 1 cut(s) 1000
BarI GAAGNNNNNNTAC 2 cut(s) 788, 820
BbrPI CACGTG 2 cut(s) 187, 304
BbsI GAAGAC 2 cut(s) 330, 653
Bbv12I GWGCWC 2 cut(s) 909, 1000
BbvI GCAGC 3 cut(s) 191, 681, 861
BccI CCATC 6 cut(s) 121, 127, 157, 168, 182, 814
BceAI ACGGC 2 cut(s) 42, 374
BciT130I CCWGG 1 cut(s) 608
BcoDI GTCTC 2 cut(s) 568, 617
BfaI CTAG 5 cut(s) 560, 633, 705, 984, 993
BisI GCNGC 5 cut(s) 205, 208, 263, 670, 875
BlnI CCTAGG 2 cut(s) 632, 704
BlsI GCNGC 5 cut(s) 206, 209, 264, 671, 876
Bme1390I CCNGG 1 cut(s) 608
BmiI GGNNCC 2 cut(s) 20, 792
BmrFI CCNGG 1 cut(s) 608
BpiI GAAGAC 2 cut(s) 330, 653
BpmI CTGGAG 1 cut(s) 884
BsaAI YACGTR 2 cut(s) 187, 304
BsaHI GRCGYC 1 cut(s) 387
BsaJI CCNNGG 5 cut(s) 312, 357, 432, 632, 704
BsaWI WCCGGW 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 636
Bse1I ACTGG 1 cut(s) 867
Bse3DI GCAATG 1 cut(s) 257
BseAI TCCGGA 1 cut(s) 21
BseBI CCWGG 1 cut(s) 608
BseDI CCNNGG 5 cut(s) 312, 357, 432, 632, 704
BseGI GGATG 2 cut(s) 113, 149
BseLI CCNNNNNNNGG 1 cut(s) 636
BseMI GCAATG 1 cut(s) 257
BseMII CTCAG 2 cut(s) 452, 927
BseNI ACTGG 1 cut(s) 867
BseRI GAGGAG 6 cut(s) 157, 160, 399, 402, 499, 571
BseXI GCAGC 3 cut(s) 191, 681, 861
BsgI GTGCAG 3 cut(s) 757, 860, 944
Bsh1236I CGCG 4 cut(s) 381, 601, 621, 770
Bsh1285I CGRYCG 1 cut(s) 379
BshFI GGCC 1 cut(s) 362
BsiEI CGRYCG 1 cut(s) 379
BsiHKAI GWGCWC 2 cut(s) 909, 1000
BsiSI CCGG 2 cut(s) 22, 266
BsiWI CGTACG 1 cut(s) 795
BslFI GGGAC 2 cut(s) 80, 685
BslI CCNNNNNNNGG 1 cut(s) 636
BsmAI GTCTC 2 cut(s) 568, 617
BsmBI CGTCTC 1 cut(s) 617
BsmFI GGGAC 2 cut(s) 80, 685
BsmI GAATGC 2 cut(s) 197, 901
BsnI GGCC 1 cut(s) 362
Bsp1286I GDGCHC 2 cut(s) 909, 1000
Bsp13I TCCGGA 1 cut(s) 21
Bsp143I GATC 4 cut(s) 254, 492, 615, 790
Bsp19I CCATGG 1 cut(s) 312
BspANI GGCC 1 cut(s) 362
BspCNI CTCAG 2 cut(s) 453, 928
BspEI TCCGGA 1 cut(s) 21
BspFNI CGCG 4 cut(s) 381, 601, 621, 770
BspHI TCATGA 1 cut(s) 850
BspLI GGNNCC 2 cut(s) 20, 792
BspPI GGATC 5 cut(s) 262, 487, 610, 785, 798
BsrBI CCGCTC 1 cut(s) 522
BsrDI GCAATG 1 cut(s) 257
BsrI ACTGG 1 cut(s) 867
BssECI CCNNGG 5 cut(s) 312, 357, 432, 632, 704
BssMI GATC 4 cut(s) 254, 492, 615, 790
BssNI GRCGYC 1 cut(s) 387
BssT1I CCWWGG 3 cut(s) 312, 632, 704
Bst2UI CCWGG 1 cut(s) 608
Bst4CI ACNGT 1 cut(s) 735
Bst6I CTCTTC 3 cut(s) 533, 647, 677
BstACI GRCGYC 1 cut(s) 387
BstAPI GCANNNNNTGC 1 cut(s) 874
BstBAI YACGTR 2 cut(s) 187, 304
BstC8I GCNNGC 1 cut(s) 927
BstDEI CTNAG 2 cut(s) 461, 936
BstDSI CCRYGG 1 cut(s) 312
BstF5I GGATG 2 cut(s) 113, 149
BstFNI CGCG 4 cut(s) 381, 601, 621, 770
BstHHI GCGC 1 cut(s) 603
BstKTI GATC 4 cut(s) 257, 495, 618, 793
BstMAI GTCTC 2 cut(s) 568, 617
BstMBI GATC 4 cut(s) 254, 492, 615, 790
BstMCI CGRYCG 1 cut(s) 379
BstMWI GCNNNNNNNGC 2 cut(s) 268, 874
BstNI CCWGG 1 cut(s) 608
BstSCI CCNGG 1 cut(s) 606
BstUI CGCG 4 cut(s) 381, 601, 621, 770
BstV1I GCAGC 3 cut(s) 191, 681, 861
BstV2I GAAGAC 2 cut(s) 330, 653
BstX2I RGATCY 1 cut(s) 790
BstYI RGATCY 1 cut(s) 790
BsuRI GGCC 1 cut(s) 362
BtgI CCRYGG 1 cut(s) 312
BtsCI GGATG 2 cut(s) 113, 149
BtsI GCAGTG 2 cut(s) 745, 877
BtsIMutI CAGTG 2 cut(s) 745, 877
Cac8I GCNNGC 1 cut(s) 927
CaiI CAGNNNCTG 1 cut(s) 874
CciI TCATGA 1 cut(s) 850
CfoI GCGC 1 cut(s) 603
CseI GACGC 1 cut(s) 395
Csp6I GTAC 1 cut(s) 796
CviAII CATG 2 cut(s) 313, 851
CviQI GTAC 1 cut(s) 796
DdeI CTNAG 2 cut(s) 461, 936
DpnI GATC 4 cut(s) 256, 494, 617, 792
DpnII GATC 4 cut(s) 254, 492, 615, 790
Eam1104I CTCTTC 3 cut(s) 533, 647, 677
EarI CTCTTC 3 cut(s) 533, 647, 677
EciI GGCGGA 5 cut(s) 411, 452, 502, 574, 652
Ecl136II GAGCTC 1 cut(s) 998
Eco130I CCWWGG 3 cut(s) 312, 632, 704
Eco24I GRGCYC 1 cut(s) 1000
Eco53kI GAGCTC 1 cut(s) 998
Eco57I CTGAAG 2 cut(s) 484, 514
Eco72I CACGTG 2 cut(s) 187, 304
EcoICRI GAGCTC 1 cut(s) 998
EcoRII CCWGG 1 cut(s) 606
EcoT14I CCWWGG 3 cut(s) 312, 632, 704
EcoT38I GRGCYC 1 cut(s) 1000
ErhI CCWWGG 3 cut(s) 312, 632, 704
Esp3I CGTCTC 1 cut(s) 617
FaeI CATG 2 cut(s) 316, 854
FaiI YATR 7 cut(s) 28, 314, 491, 593, 731, 852, 912
FaqI GGGAC 2 cut(s) 80, 685
FatI CATG 2 cut(s) 312, 850
FauI CCCGC 1 cut(s) 79
FblI GTMKAC 1 cut(s) 744
Fnu4HI GCNGC 5 cut(s) 205, 208, 263, 670, 875
FokI GGATG 2 cut(s) 100, 136
FriOI GRGCYC 1 cut(s) 1000
Fsp4HI GCNGC 5 cut(s) 205, 208, 263, 670, 875
FspBI CTAG 5 cut(s) 560, 633, 705, 984, 993
GlaI GCGC 1 cut(s) 602
GluI GCNGC 5 cut(s) 205, 208, 263, 670, 875
GsuI CTGGAG 1 cut(s) 884
HaeIII GGCC 1 cut(s) 362
HapII CCGG 2 cut(s) 22, 266
HgaI GACGC 1 cut(s) 395
HhaI GCGC 1 cut(s) 603
Hin1I GRCGYC 1 cut(s) 387
Hin1II CATG 2 cut(s) 316, 854
Hin6I GCGC 1 cut(s) 601
HinP1I GCGC 1 cut(s) 601
HincII GTYRAC 1 cut(s) 745
HindII GTYRAC 1 cut(s) 745
HinfI GANTC 5 cut(s) 371, 484, 525, 578, 698
HpaII CCGG 2 cut(s) 22, 266
HphI GGTGA 2 cut(s) 130, 787
Hpy166II GTNNAC 1 cut(s) 745
Hpy188I TCNGA 7 cut(s) 110, 215, 235, 376, 723, 787, 937
Hpy188III TCNNGA 5 cut(s) 22, 808, 851, 978, 993
Hpy8I GTNNAC 1 cut(s) 745
Hpy99I CGWCG 9 cut(s) 239, 242, 245, 342, 386, 389, 484, 539, 749
HpyAV CCTTC 4 cut(s) 55, 108, 438, 745
HpyCH4III ACNGT 1 cut(s) 735
HpyCH4IV ACGT 3 cut(s) 10, 186, 303
HpyCH4V TGCA 5 cut(s) 30, 738, 877, 925, 968
HpyF10VI GCNNNNNNNGC 2 cut(s) 268, 874
HpyF3I CTNAG 2 cut(s) 461, 936
HpySE526I ACGT 3 cut(s) 10, 186, 303
Hsp92I GRCGYC 1 cut(s) 387
Hsp92II CATG 2 cut(s) 316, 854
HspAI GCGC 1 cut(s) 601
Kpn2I TCCGGA 1 cut(s) 21
Kzo9I GATC 4 cut(s) 254, 492, 615, 790
LmnI GCTCC 5 cut(s) 24, 268, 865, 904, 980
Lsp1109I GCAGC 3 cut(s) 191, 681, 861
MaeI CTAG 5 cut(s) 560, 633, 705, 984, 993
MaeII ACGT 3 cut(s) 10, 186, 303
MalI GATC 4 cut(s) 256, 494, 617, 792
MbiI CCGCTC 1 cut(s) 522
MboI GATC 4 cut(s) 254, 492, 615, 790
MflI RGATCY 1 cut(s) 790
MhlI GDGCHC 2 cut(s) 909, 1000
MlyI GAGTC 5 cut(s) 365, 493, 519, 572, 707
MmeI TCCRAC 4 cut(s) 133, 258, 399, 765
MroI TCCGGA 1 cut(s) 21
MroXI GAANNNNTTC 1 cut(s) 11
MspA1I CMGCKG 2 cut(s) 252, 368
MspI CCGG 2 cut(s) 22, 266
MspR9I CCNGG 1 cut(s) 608
Mva1269I GAATGC 2 cut(s) 197, 901
MvaI CCWGG 1 cut(s) 608
MvnI CGCG 4 cut(s) 381, 601, 621, 770
MwoI GCNNNNNNNGC 2 cut(s) 268, 874
NcoI CCATGG 1 cut(s) 312
NdeII GATC 4 cut(s) 254, 492, 615, 790
NlaIII CATG 2 cut(s) 316, 854
NlaIV GGNNCC 2 cut(s) 20, 792
NmeAIII GCCGAG 3 cut(s) 338, 413, 541
PagI TCATGA 1 cut(s) 850
PcsI WCGNNNNNNNCGW 1 cut(s) 791
PctI GAATGC 2 cut(s) 197, 901
PdmI GAANNNNTTC 1 cut(s) 11
Pfl23II CGTACG 1 cut(s) 795
PkrI GCNGC 5 cut(s) 206, 209, 264, 671, 876
PleI GAGTC 5 cut(s) 365, 492, 519, 572, 706
PmaCI CACGTG 2 cut(s) 187, 304
PmlI CACGTG 2 cut(s) 187, 304
PpsI GAGTC 5 cut(s) 365, 492, 519, 572, 706
Ppu21I YACGTR 2 cut(s) 187, 304
Psp124BI GAGCTC 1 cut(s) 1000
Psp1406I AACGTT 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 606
PspCI CACGTG 2 cut(s) 187, 304
PspGI CCWGG 1 cut(s) 606
PspLI CGTACG 1 cut(s) 795
PspN4I GGNNCC 2 cut(s) 20, 792
PstNI CAGNNNCTG 1 cut(s) 874
PsuI RGATCY 1 cut(s) 790
RsaI GTAC 1 cut(s) 797
RsaNI GTAC 1 cut(s) 796
SacI GAGCTC 1 cut(s) 1000
SalI GTCGAC 1 cut(s) 743
SatI GCNGC 5 cut(s) 205, 208, 263, 670, 875
Sau3AI GATC 4 cut(s) 254, 492, 615, 790
SchI GAGTC 5 cut(s) 365, 493, 519, 572, 707
ScrFI CCNGG 1 cut(s) 608
SduI GDGCHC 2 cut(s) 909, 1000
SspMI CTAG 5 cut(s) 560, 633, 705, 984, 993
SstI GAGCTC 1 cut(s) 1000
StyD4I CCNGG 1 cut(s) 606
StyI CCWWGG 3 cut(s) 312, 632, 704
TaaI ACNGT 1 cut(s) 735
TaiI ACGT 3 cut(s) 13, 189, 306
TaqI TCGA 3 cut(s) 276, 744, 815
TauI GCSGC 2 cut(s) 210, 265
TscAI CASTG 2 cut(s) 745, 884
TseI GCWGC 3 cut(s) 204, 669, 874
TspDTI ATGAA 4 cut(s) 90, 336, 558, 839
TspGWI ACGGA 1 cut(s) 783
TspRI CASTG 2 cut(s) 745, 884
XbaI TCTAGA 1 cut(s) 992
XmaJI CCTAGG 2 cut(s) 632, 704
XmiI GTMKAC 1 cut(s) 744
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 5 cut(s) 560, 633, 705, 984, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.