Rh2DG157300

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0015083
Physical Location & Seq
Forward (+)
13155051 .. 13156560
1510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG157300.1

Sequence Viewer

Length: 1005 bp
ATGGCGAAACGTTTCAGGCTCCGGATATCCAGGGTTATTCCCTCCTTCCAATCCTGCCGTTCAAAAGACCCCGCTTCTCTCCCGGCCAATCCCGTCCCTTCATTTCTCCGACCATCCCCATCACTCAACCACCACCTCACTACCCCACCATCCAAATCCCATCACTCCTCCTCCATCAAACGCCACGTGTCCTCCGCATTCGGCTGCGGCTTCGGAACAAAACCAACCGTTTCCGACGACGACGACCACAGCGGATCACTGCCGCCGGAGCTGTTCGAGTGGGAAAGAGAGGACAAGTGGCACGTGGTCGCCATGGTCAATGAAGACAAAACCCCCCGTCGCAAAATCTACACTTCCTCGGCCTCCGCTGACTCCGACCGCGACGACGCCGTTTCGCTTTCTTTCTCTCCTCCTCCACCTCCGCCTCCTTCCTCGGCGGAGAAGAAGAAGAAACAAAGACTGAGGAAAAAAAAAACAACGACGAGTCGTATGATCCGCTTCAGCACCTCCTCCGCCGAGAGCGGACTCTTCAGCGACGAAGATGAAGAAAACGAAACCCTAGTCTCCTTTTCCACCGACTCCTCCGCCGATATATTCACGCGCCACCTGGCAACGATCCGCGAGACGACCCCTAGGCGGAGGAAGAAGACGAAGAGTAAAGCTAAACGCAGCGTTTCAAGGAAGAGTGTTGAGTTTGAGTCCCCTAGGCTGTCAGTGTTTCAGAGGCTTATACCGTGCAGTGTCGACGGGAAGGTTAGGGAGAGTTTCGCGGTGGTGAAGAAGTCGGAGGATCCGTACGAGGACTTCAAGAGGTCGATGATGGAGATGATATTGGAGAAGCAGATGTTTCATGAGAAAGAACTGGAGCAGTTGCTGCACTGCTTCTTGTCTTTGAATGCGAGGGAGCACCATAGGGTCATTGTGCAGGCTTTCTCTGAGATTTGGGAGGGTTTGTTCTGTGGTAGTGCAAGGTCGTCAGGAGCTAGAGTTTCTAGAGCTCTTTAG

Protein Analysis

334

Amino Acids

37.87

Weight (kDa)

9.7

Isoelectric Point (pI)

58.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 262 - 319 2.2e-26 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18500
fragaria_vesca FvH4_1g13640
malus_domestica MD02G1151100.v1.1 MD15G1265600.v1.1
prunus_persica Prupe.7G152000_v2.0.a1
pyrus_communis pycom15g23130
rosa_chinensis RchiOBHm_Chr2g0101991
rosa_laevigata RLG00000017124
rosa_multiflora Rmu_co8434933.1_g000001
rosa_roxburghii Rroxscaffold_2G00140860
rosa_rugosa Rorug02G0103700
rosa_samantha Rh2AG151800 Rh2BG157200 Rh2CG157200 Rh2DG157300
rosa_wichuraiana Rw2G011850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 522
AccI GTMKAC 1 cut(s) 744
AccII CGCG 4 cut(s) 381, 601, 621, 770
AccIII TCCGGA 1 cut(s) 21
AclI AACGTT 1 cut(s) 10
AclWI GGATC 5 cut(s) 262, 487, 610, 785, 798
AcoI YGGCCR 1 cut(s) 84
AcuI CTGAAG 2 cut(s) 484, 514
AcvI CACGTG 2 cut(s) 187, 304
AcyI GRCGYC 1 cut(s) 387
AfaI GTAC 1 cut(s) 797
AfiI CCNNNNNNNGG 1 cut(s) 636
AflIII ACRYGT 1 cut(s) 186
AgsI TTSAA 4 cut(s) 63, 678, 808, 895
AjnI CCWGG 2 cut(s) 29, 606
AloI GAACNNNNNNTCC 2 cut(s) 938, 970
AluBI AGCT 4 cut(s) 271, 662, 983, 998
AluI AGCT 4 cut(s) 271, 662, 983, 998
Alw21I GWGCWC 2 cut(s) 909, 1000
Alw26I GTCTC 2 cut(s) 568, 617
AlwI GGATC 5 cut(s) 262, 487, 610, 785, 798
AlwNI CAGNNNCTG 1 cut(s) 874
Aor13HI TCCGGA 1 cut(s) 21
AoxI GGCC 2 cut(s) 84, 360
ApeKI GCWGC 3 cut(s) 204, 669, 874
ArsI GACNNNNNNTTYG 2 cut(s) 546, 578
Asp700I GAANNNNTTC 1 cut(s) 11
AspA2I CCTAGG 2 cut(s) 632, 704
AspLEI GCGC 1 cut(s) 603
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 1 cut(s) 787
AvrII CCTAGG 2 cut(s) 632, 704
BamHI GGATCC 1 cut(s) 790
BanII GRGCYC 1 cut(s) 1000
BarI GAAGNNNNNNTAC 2 cut(s) 788, 820
BbrPI CACGTG 2 cut(s) 187, 304
BbsI GAAGAC 2 cut(s) 330, 653
Bbv12I GWGCWC 2 cut(s) 909, 1000
BbvI GCAGC 3 cut(s) 191, 681, 861
BccI CCATC 6 cut(s) 121, 127, 157, 168, 182, 814
BceAI ACGGC 2 cut(s) 42, 374
BciT130I CCWGG 2 cut(s) 31, 608
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 2 cut(s) 568, 617
BfaI CTAG 5 cut(s) 560, 633, 705, 984, 993
BisI GCNGC 5 cut(s) 205, 208, 263, 670, 875
BlnI CCTAGG 2 cut(s) 632, 704
BlsI GCNGC 5 cut(s) 206, 209, 264, 671, 876
Bme1390I CCNGG 3 cut(s) 31, 83, 608
BmiI GGNNCC 2 cut(s) 20, 792
BmrFI CCNGG 3 cut(s) 31, 83, 608
BpiI GAAGAC 2 cut(s) 330, 653
BpmI CTGGAG 1 cut(s) 884
BpuMI CCSGG 1 cut(s) 83
BsaAI YACGTR 2 cut(s) 187, 304
BsaHI GRCGYC 1 cut(s) 387
BsaJI CCNNGG 6 cut(s) 30, 312, 357, 432, 632, 704
BsaWI WCCGGW 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 636
Bse1I ACTGG 1 cut(s) 867
BseAI TCCGGA 1 cut(s) 21
BseBI CCWGG 2 cut(s) 31, 608
BseDI CCNNGG 6 cut(s) 30, 312, 357, 432, 632, 704
BseGI GGATG 2 cut(s) 113, 149
BseLI CCNNNNNNNGG 1 cut(s) 636
BseMII CTCAG 2 cut(s) 452, 927
BseNI ACTGG 1 cut(s) 867
BseRI GAGGAG 6 cut(s) 157, 160, 399, 402, 499, 571
BseXI GCAGC 3 cut(s) 191, 681, 861
BsgI GTGCAG 3 cut(s) 757, 860, 944
Bsh1236I CGCG 4 cut(s) 381, 601, 621, 770
Bsh1285I CGRYCG 1 cut(s) 379
BshFI GGCC 2 cut(s) 86, 362
BsiEI CGRYCG 1 cut(s) 379
BsiHKAI GWGCWC 2 cut(s) 909, 1000
BsiSI CCGG 3 cut(s) 22, 83, 266
BsiWI CGTACG 1 cut(s) 795
BslFI GGGAC 2 cut(s) 80, 685
BslI CCNNNNNNNGG 1 cut(s) 636
BsmAI GTCTC 2 cut(s) 568, 617
BsmBI CGTCTC 1 cut(s) 617
BsmFI GGGAC 2 cut(s) 80, 685
BsmI GAATGC 2 cut(s) 197, 901
BsnI GGCC 2 cut(s) 86, 362
Bsp1286I GDGCHC 2 cut(s) 909, 1000
Bsp13I TCCGGA 1 cut(s) 21
Bsp143I GATC 4 cut(s) 254, 492, 615, 790
Bsp19I CCATGG 1 cut(s) 312
BspANI GGCC 2 cut(s) 86, 362
BspCNI CTCAG 2 cut(s) 453, 928
BspEI TCCGGA 1 cut(s) 21
BspFNI CGCG 4 cut(s) 381, 601, 621, 770
BspHI TCATGA 1 cut(s) 850
BspLI GGNNCC 2 cut(s) 20, 792
BspPI GGATC 5 cut(s) 262, 487, 610, 785, 798
BsrBI CCGCTC 1 cut(s) 522
BsrI ACTGG 1 cut(s) 867
BssECI CCNNGG 6 cut(s) 30, 312, 357, 432, 632, 704
BssMI GATC 4 cut(s) 254, 492, 615, 790
BssNI GRCGYC 1 cut(s) 387
BssT1I CCWWGG 3 cut(s) 312, 632, 704
Bst2UI CCWGG 2 cut(s) 31, 608
Bst4CI ACNGT 2 cut(s) 229, 735
Bst6I CTCTTC 3 cut(s) 533, 647, 677
BstACI GRCGYC 1 cut(s) 387
BstAPI GCANNNNNTGC 1 cut(s) 874
BstBAI YACGTR 2 cut(s) 187, 304
BstC8I GCNNGC 1 cut(s) 927
BstDEI CTNAG 2 cut(s) 461, 936
BstDSI CCRYGG 1 cut(s) 312
BstF5I GGATG 2 cut(s) 113, 149
BstFNI CGCG 4 cut(s) 381, 601, 621, 770
BstHHI GCGC 1 cut(s) 603
BstKTI GATC 4 cut(s) 257, 495, 618, 793
BstMAI GTCTC 2 cut(s) 568, 617
BstMBI GATC 4 cut(s) 254, 492, 615, 790
BstMCI CGRYCG 1 cut(s) 379
BstMWI GCNNNNNNNGC 2 cut(s) 268, 874
BstNI CCWGG 2 cut(s) 31, 608
BstSCI CCNGG 3 cut(s) 29, 81, 606
BstUI CGCG 4 cut(s) 381, 601, 621, 770
BstV1I GCAGC 3 cut(s) 191, 681, 861
BstV2I GAAGAC 2 cut(s) 330, 653
BstX2I RGATCY 1 cut(s) 790
BstYI RGATCY 1 cut(s) 790
BsuRI GGCC 2 cut(s) 86, 362
BtgI CCRYGG 1 cut(s) 312
BtsCI GGATG 2 cut(s) 113, 149
BtsI GCAGTG 3 cut(s) 257, 745, 877
BtsIMutI CAGTG 4 cut(s) 257, 720, 745, 877
Cac8I GCNNGC 1 cut(s) 927
CaiI CAGNNNCTG 1 cut(s) 874
CciI TCATGA 1 cut(s) 850
CfoI GCGC 1 cut(s) 603
CseI GACGC 1 cut(s) 395
Csp6I GTAC 1 cut(s) 796
CviAII CATG 2 cut(s) 313, 851
CviQI GTAC 1 cut(s) 796
DdeI CTNAG 2 cut(s) 461, 936
DpnI GATC 4 cut(s) 256, 494, 617, 792
DpnII GATC 4 cut(s) 254, 492, 615, 790
EaeI YGGCCR 1 cut(s) 84
Eam1104I CTCTTC 3 cut(s) 533, 647, 677
EarI CTCTTC 3 cut(s) 533, 647, 677
EciI GGCGGA 5 cut(s) 411, 452, 502, 574, 652
Ecl136II GAGCTC 1 cut(s) 998
Eco130I CCWWGG 3 cut(s) 312, 632, 704
Eco24I GRGCYC 1 cut(s) 1000
Eco32I GATATC 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 998
Eco57I CTGAAG 2 cut(s) 484, 514
Eco72I CACGTG 2 cut(s) 187, 304
EcoICRI GAGCTC 1 cut(s) 998
EcoRII CCWGG 2 cut(s) 29, 606
EcoRV GATATC 1 cut(s) 27
EcoT14I CCWWGG 3 cut(s) 312, 632, 704
EcoT38I GRGCYC 1 cut(s) 1000
ErhI CCWWGG 3 cut(s) 312, 632, 704
Esp3I CGTCTC 1 cut(s) 617
FaeI CATG 2 cut(s) 316, 854
FaiI YATR 6 cut(s) 314, 491, 593, 731, 852, 912
FaqI GGGAC 2 cut(s) 80, 685
FatI CATG 2 cut(s) 312, 850
FauI CCCGC 1 cut(s) 79
FblI GTMKAC 1 cut(s) 744
Fnu4HI GCNGC 5 cut(s) 205, 208, 263, 670, 875
FokI GGATG 2 cut(s) 100, 136
FriOI GRGCYC 1 cut(s) 1000
Fsp4HI GCNGC 5 cut(s) 205, 208, 263, 670, 875
FspBI CTAG 5 cut(s) 560, 633, 705, 984, 993
GlaI GCGC 1 cut(s) 602
GluI GCNGC 5 cut(s) 205, 208, 263, 670, 875
GsuI CTGGAG 1 cut(s) 884
HaeIII GGCC 2 cut(s) 86, 362
HapII CCGG 3 cut(s) 22, 83, 266
HgaI GACGC 1 cut(s) 395
HhaI GCGC 1 cut(s) 603
Hin1I GRCGYC 1 cut(s) 387
Hin1II CATG 2 cut(s) 316, 854
Hin6I GCGC 1 cut(s) 601
HinP1I GCGC 1 cut(s) 601
HincII GTYRAC 1 cut(s) 745
HindII GTYRAC 1 cut(s) 745
HinfI GANTC 5 cut(s) 371, 484, 525, 578, 698
HpaII CCGG 3 cut(s) 22, 83, 266
HphI GGTGA 1 cut(s) 787
Hpy166II GTNNAC 1 cut(s) 745
Hpy188I TCNGA 7 cut(s) 110, 215, 235, 376, 723, 787, 937
Hpy188III TCNNGA 5 cut(s) 22, 808, 851, 978, 993
Hpy8I GTNNAC 1 cut(s) 745
Hpy99I CGWCG 9 cut(s) 239, 242, 245, 342, 386, 389, 484, 539, 749
HpyAV CCTTC 4 cut(s) 55, 108, 438, 745
HpyCH4III ACNGT 2 cut(s) 229, 735
HpyCH4IV ACGT 3 cut(s) 10, 186, 303
HpyCH4V TGCA 4 cut(s) 738, 877, 925, 968
HpyF10VI GCNNNNNNNGC 2 cut(s) 268, 874
HpyF3I CTNAG 2 cut(s) 461, 936
HpySE526I ACGT 3 cut(s) 10, 186, 303
Hsp92I GRCGYC 1 cut(s) 387
Hsp92II CATG 2 cut(s) 316, 854
HspAI GCGC 1 cut(s) 601
Kpn2I TCCGGA 1 cut(s) 21
Kzo9I GATC 4 cut(s) 254, 492, 615, 790
LmnI GCTCC 5 cut(s) 24, 268, 865, 904, 980
Lsp1109I GCAGC 3 cut(s) 191, 681, 861
MaeI CTAG 5 cut(s) 560, 633, 705, 984, 993
MaeII ACGT 3 cut(s) 10, 186, 303
MalI GATC 4 cut(s) 256, 494, 617, 792
MbiI CCGCTC 1 cut(s) 522
MboI GATC 4 cut(s) 254, 492, 615, 790
MflI RGATCY 1 cut(s) 790
MhlI GDGCHC 2 cut(s) 909, 1000
MlyI GAGTC 5 cut(s) 365, 493, 519, 572, 707
MmeI TCCRAC 4 cut(s) 133, 258, 399, 765
MroI TCCGGA 1 cut(s) 21
MroXI GAANNNNTTC 1 cut(s) 11
MspA1I CMGCKG 2 cut(s) 252, 368
MspI CCGG 3 cut(s) 22, 83, 266
MspR9I CCNGG 3 cut(s) 31, 83, 608
Mva1269I GAATGC 2 cut(s) 197, 901
MvaI CCWGG 2 cut(s) 31, 608
MvnI CGCG 4 cut(s) 381, 601, 621, 770
MwoI GCNNNNNNNGC 2 cut(s) 268, 874
NciI CCSGG 1 cut(s) 83
NcoI CCATGG 1 cut(s) 312
NdeII GATC 4 cut(s) 254, 492, 615, 790
NlaIII CATG 2 cut(s) 316, 854
NlaIV GGNNCC 2 cut(s) 20, 792
NmeAIII GCCGAG 3 cut(s) 338, 413, 541
PagI TCATGA 1 cut(s) 850
PcsI WCGNNNNNNNCGW 1 cut(s) 791
PctI GAATGC 2 cut(s) 197, 901
PdmI GAANNNNTTC 1 cut(s) 11
Pfl23II CGTACG 1 cut(s) 795
PkrI GCNGC 5 cut(s) 206, 209, 264, 671, 876
PleI GAGTC 5 cut(s) 365, 492, 519, 572, 706
PmaCI CACGTG 2 cut(s) 187, 304
PmlI CACGTG 2 cut(s) 187, 304
PpsI GAGTC 5 cut(s) 365, 492, 519, 572, 706
Ppu21I YACGTR 2 cut(s) 187, 304
Psp124BI GAGCTC 1 cut(s) 1000
Psp1406I AACGTT 1 cut(s) 10
Psp6I CCWGG 2 cut(s) 29, 606
PspCI CACGTG 2 cut(s) 187, 304
PspGI CCWGG 2 cut(s) 29, 606
PspLI CGTACG 1 cut(s) 795
PspN4I GGNNCC 2 cut(s) 20, 792
PstNI CAGNNNCTG 1 cut(s) 874
PsuI RGATCY 1 cut(s) 790
RsaI GTAC 1 cut(s) 797
RsaNI GTAC 1 cut(s) 796
SacI GAGCTC 1 cut(s) 1000
SalI GTCGAC 1 cut(s) 743
SatI GCNGC 5 cut(s) 205, 208, 263, 670, 875
Sau3AI GATC 4 cut(s) 254, 492, 615, 790
SchI GAGTC 5 cut(s) 365, 493, 519, 572, 707
ScrFI CCNGG 3 cut(s) 31, 83, 608
SduI GDGCHC 2 cut(s) 909, 1000
SspMI CTAG 5 cut(s) 560, 633, 705, 984, 993
SstI GAGCTC 1 cut(s) 1000
StyD4I CCNGG 3 cut(s) 29, 81, 606
StyI CCWWGG 3 cut(s) 312, 632, 704
TaaI ACNGT 2 cut(s) 229, 735
TaiI ACGT 3 cut(s) 13, 189, 306
TaqI TCGA 3 cut(s) 276, 744, 815
TauI GCSGC 2 cut(s) 210, 265
TscAI CASTG 4 cut(s) 264, 720, 745, 884
TseI GCWGC 3 cut(s) 204, 669, 874
TspDTI ATGAA 4 cut(s) 90, 336, 558, 839
TspGWI ACGGA 1 cut(s) 783
TspRI CASTG 4 cut(s) 264, 720, 745, 884
XbaI TCTAGA 1 cut(s) 992
XmaJI CCTAGG 2 cut(s) 632, 704
XmiI GTMKAC 1 cut(s) 744
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 5 cut(s) 560, 633, 705, 984, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.