Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015083

Physical Location & Seq

Genomic Coordinates Forward (+)

17205970 .. 17210719

Gene Structure 4750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g23130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGCGAAACGTTTCAATCTCCGATTCTCCCGAGTCATCACCTCCTTCCATTCCTGCCGTTCGAAAGATCCCTCCTCTCTCCCGTCAAATCCCGTCCCTTCATTCCTCCGTCCACCCCCCTTAGCCACGGCCCCGACACCACCTCTACCGTCCAAAACCCACCACCACTCCTCATCCATCAAACGCCACGTGTTATTTTGCGGCTGTAGACCCAGACCAACGCTCTCCGACGACGACCACACCAAATCATCGCCCGATCTTCATAAGTTCGAGTGGGACCGAGAGGACAAGTGGCACGTTGTCGCAAAAGTCTACGACATCACCCCCCGACGCAAAATCTACACTTCCTCCGCCTCGCCCGAATCCGACGCAAACGATGGCGCTTCACCTCCTCCCTCCTCCGCCATAGAGAAGGAACAAAAGAGGAAAACGCGACGAGTCAACAGAAAGAAGAAAAGAACGACGAGTCGCATCCGGATCAGCGCGTCCTCGTTCGAAACCGGACTTTTTAGCAGCGAAGGCGGCGGCTTCGACGATGGCGAAGAAACCGAAACCCTAGTCTCCACCAGATCATCCTCCAGAAGCTTCTCCACCGACTCTTCGCCGCCGCCAAGGCGAAGAAAAAAGAAGCGGAGCAGCAGCGCCGCCAGACACAGCCTTTCGAGGAAGTCTGCGGCAGGGGAGAGCGAAGCTGTGCCGGCAAGGCTGTCGATGTTTCAGAGGCTGATACCGTGCAGGGTGGAGGGAAAAGTGAGGGAGAGCTTCGCGGTGGTGAAGAAGTCAGAGGATCCTTACGAGGATTTTAAGAGGTCGATGATGGAGATGGTTTTGGAGAAGCAGATGTTTGAGGAGAGGGAGCTGGAGCAACTGCTGCATTGCTTTTTGTCGTTGAATTCGAAGGAGCATCATAGGGTTATTGTTGAAGCTTTCACAGAGATTTGGGAGGGTTTGTTCTGTTGTAGTGCAAGATCCTCAGGAGCTAGGGAGCGTGTATTTGAAGGAAGAGAAAAAACAAAATCAGACAAAAATACTATGGGCTACTGCATCAGTAGTCTTCTAGCTTACTCTTGTTTAGTCCTTTCTAGATTTCTTGTCCAACGTGGCCCAGGGATTAGGATACACCTGATTTTCGGGAGATTTTTTTGGGTAGGGGACTTACGAACCCCTGTGTCCAAGACACAAACAAGTGGCATCCCTTGCATTCTCCCGTGTCCCGGGCGGACAGGTTACACGACACTAGGATACATATATATGTTGTGTGTGTTGTTCAATCAAGGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

428

Amino Acids

48.32

Weight (kDa)

9.8

Isoelectric Point (pI)

60.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18500
fragaria_vesca	FvH4_1g13640
malus_domestica	MD02G1151100.v1.1 MD15G1265600.v1.1
prunus_persica	Prupe.7G152000_v2.0.a1
pyrus_communis	pycom15g23130
rosa_chinensis	RchiOBHm_Chr2g0101991
rosa_laevigata	RLG00000017124
rosa_multiflora	Rmu_co8434933.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140860
rosa_rugosa	Rorug02G0103700
rosa_samantha	Rh2AG151800 Rh2BG157200 Rh2CG157200 Rh2DG157300
rosa_wichuraiana	Rw2G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	208, 312
AccII	CGCG	3 cut(s)	433, 485, 767
AccIII	TCCGGA	1 cut(s)	474
AclI	AACGTT	1 cut(s)	10
AclWI	GGATC	5 cut(s)	62, 485, 782, 795, 963
AcsI	RAATTY	1 cut(s)	892
AcvI	CACGTG	1 cut(s)	190
AfiI	CCNNNNNNNGG	1 cut(s)	1214
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	5 cut(s)	16, 892, 923, 998, 1270
AjnI	CCWGG	1 cut(s)	1105
AloI	GAACNNNNNNTCC	2 cut(s)	935, 967
AluBI	AGCT	7 cut(s)	585, 692, 762, 859, 926, 980, 1061
AluI	AGCT	7 cut(s)	585, 692, 762, 859, 926, 980, 1061
Alw26I	GTCTC	1 cut(s)	565
AlwI	GGATC	5 cut(s)	62, 485, 782, 795, 963
AlwNI	CAGNNNCTG	1 cut(s)	724
Ama87I	CYCGRG	2 cut(s)	30, 1214
Aor13HI	TCCGGA	1 cut(s)	474
AoxI	GGCC	3 cut(s)	129, 1102, 1276
ApeKI	GCWGC	4 cut(s)	513, 636, 639, 871
ApoI	RAATTY	1 cut(s)	892
ArsI	GACNNNNNNTTYG	2 cut(s)	543, 575
Asp700I	GAANNNNTTC	1 cut(s)	11
AspLEI	GCGC	3 cut(s)	383, 485, 644
AspS9I	GGNCC	4 cut(s)	130, 277, 1103, 1277
AsuC2I	CCSGG	2 cut(s)	1215, 1216
AsuHPI	GGTGA	4 cut(s)	31, 313, 378, 784
AsuII	TTCGAA	3 cut(s)	62, 495, 896
AvaI	CYCGRG	2 cut(s)	30, 1214
AvaII	GGWCC	1 cut(s)	277
AxyI	CCTNAGG	1 cut(s)	973
BamHI	GGATCC	1 cut(s)	787
BbrPI	CACGTG	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	1046
BbvI	GCAGC	4 cut(s)	525, 648, 651, 858
BccI	CCATC	5 cut(s)	185, 371, 530, 811, 817
BceAI	ACGGC	2 cut(s)	42, 144
BcgI	CGANNNNNNTGC	2 cut(s)	690, 724
BciT130I	CCWGG	1 cut(s)	1107
BciVI	GTATCC	2 cut(s)	1110, 1235
BcnI	CCSGG	2 cut(s)	1215, 1216
BcoDI	GTCTC	1 cut(s)	565
BfaI	CTAG	5 cut(s)	557, 981, 1058, 1083, 1238
BfmI	CTRYAG	1 cut(s)	205
BfoI	RGCGCY	2 cut(s)	384, 645
BfuI	GTATCC	2 cut(s)	1110, 1235
BglI	GCCNNNNNGGC	2 cut(s)	613, 703
Bme1390I	CCNGG	3 cut(s)	1107, 1215, 1216
Bme18I	GGWCC	1 cut(s)	277
BmeT110I	CYCGRG	2 cut(s)	30, 1214
BmgT120I	GGNCC	4 cut(s)	130, 277, 1103, 1277
BmiI	GGNNCC	3 cut(s)	132, 278, 789
BmrFI	CCNGG	3 cut(s)	1107, 1215, 1216
BmsI	GCATC	4 cut(s)	480, 913, 1053, 1200
BpiI	GAAGAC	1 cut(s)	1046
BpmI	CTGGAG	2 cut(s)	562, 881
Bpu10I	CCTNAGC	1 cut(s)	121
Bpu14I	TTCGAA	3 cut(s)	62, 495, 896
BpuMI	CCSGG	2 cut(s)	1215, 1216
BsaAI	YACGTR	1 cut(s)	190
BsaJI	CCNNGG	5 cut(s)	126, 611, 1105, 1106, 1214
BsaWI	WCCGGW	2 cut(s)	474, 500
BsaXI	ACNNNNNCTCC	6 cut(s)	152, 182, 332, 362, 935, 965
Bsc4I	CCNNNNNNNGG	1 cut(s)	1214
Bse118I	RCCGGY	1 cut(s)	697
Bse21I	CCTNAGG	1 cut(s)	973
Bse3DI	GCAATG	1 cut(s)	874
BseAI	TCCGGA	1 cut(s)	474
BseBI	CCWGG	1 cut(s)	1107
BseDI	CCNNGG	5 cut(s)	126, 611, 1105, 1106, 1214
BseGI	GGATG	4 cut(s)	173, 471, 572, 1191
BseLI	CCNNNNNNNGG	1 cut(s)	1214
BseMI	GCAATG	1 cut(s)	874
BseMII	CTCAG	1 cut(s)	987
BseRI	GAGGAG	5 cut(s)	64, 160, 381, 388, 863
BseXI	GCAGC	4 cut(s)	525, 648, 651, 858
BsgI	GTGCAG	1 cut(s)	754
Bsh1236I	CGCG	3 cut(s)	433, 485, 767
BshFI	GGCC	3 cut(s)	131, 1104, 1278
BsiHKCI	CYCGRG	2 cut(s)	30, 1214
BsiSI	CCGG	4 cut(s)	475, 501, 698, 1215
BslFI	GGGAC	4 cut(s)	80, 290, 1166, 1197
BslI	CCNNNNNNNGG	1 cut(s)	1214
BsmAI	GTCTC	1 cut(s)	565
BsmFI	GGGAC	4 cut(s)	80, 290, 1166, 1197
BsmI	GAATGC	1 cut(s)	1200
BsnI	GGCC	3 cut(s)	131, 1104, 1278
BsoBI	CYCGRG	2 cut(s)	30, 1214
Bsp119I	TTCGAA	3 cut(s)	62, 495, 896
Bsp13I	TCCGGA	1 cut(s)	474
Bsp143I	GATC	6 cut(s)	67, 256, 477, 569, 787, 968
BspANI	GGCC	3 cut(s)	131, 1104, 1278
BspCNI	CTCAG	1 cut(s)	986
BspEI	TCCGGA	1 cut(s)	474
BspFNI	CGCG	3 cut(s)	433, 485, 767
BspLI	GGNNCC	3 cut(s)	132, 278, 789
BspPI	GGATC	5 cut(s)	62, 485, 782, 795, 963
BspT104I	TTCGAA	3 cut(s)	62, 495, 896
BsrDI	GCAATG	1 cut(s)	874
BsrFI	RCCGGY	1 cut(s)	697
BssAI	RCCGGY	1 cut(s)	697
BssECI	CCNNGG	5 cut(s)	126, 611, 1105, 1106, 1214
BssMI	GATC	6 cut(s)	67, 256, 477, 569, 787, 968
BssT1I	CCWWGG	1 cut(s)	611
Bst2UI	CCWGG	1 cut(s)	1107
Bst4CI	ACNGT	2 cut(s)	150, 732
Bst6I	CTCTTC	2 cut(s)	604, 997
BstAPI	GCANNNNNTGC	2 cut(s)	871, 1197
BstBAI	YACGTR	1 cut(s)	190
BstBI	TTCGAA	3 cut(s)	62, 495, 896
BstC8I	GCNNGC	1 cut(s)	699
BstDEI	CTNAG	2 cut(s)	121, 973
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	4 cut(s)	173, 471, 572, 1191
BstFNI	CGCG	3 cut(s)	433, 485, 767
BstH2I	RGCGCY	2 cut(s)	384, 645
BstHHI	GCGC	3 cut(s)	383, 485, 644
BstKTI	GATC	6 cut(s)	70, 259, 480, 572, 790, 971
BstMAI	GTCTC	1 cut(s)	565
BstMBI	GATC	6 cut(s)	67, 256, 477, 569, 787, 968
BstMWI	GCNNNNNNNGC	7 cut(s)	519, 522, 613, 698, 703, 871, 1197
BstNI	CCWGG	1 cut(s)	1107
BstSCI	CCNGG	3 cut(s)	1105, 1213, 1214
BstSFI	CTRYAG	1 cut(s)	205
BstUI	CGCG	3 cut(s)	433, 485, 767
BstV1I	GCAGC	4 cut(s)	525, 648, 651, 858
BstV2I	GAAGAC	1 cut(s)	1046
BstX2I	RGATCY	3 cut(s)	67, 787, 968
BstYI	RGATCY	3 cut(s)	67, 787, 968
Bsu36I	CCTNAGG	1 cut(s)	973
BsuI	GTATCC	2 cut(s)	1110, 1235
BsuRI	GGCC	3 cut(s)	131, 1104, 1278
BtgI	CCRYGG	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	234
BtsCI	GGATG	4 cut(s)	173, 471, 572, 1191
Cac8I	GCNNGC	1 cut(s)	699
CaiI	CAGNNNCTG	1 cut(s)	724
CfoI	GCGC	3 cut(s)	383, 485, 644
Cfr10I	RCCGGY	1 cut(s)	697
Cfr13I	GGNCC	4 cut(s)	130, 277, 1103, 1277
Cfr9I	CCCGGG	1 cut(s)	1214
CseI	GACGC	3 cut(s)	339, 377, 474
DdeI	CTNAG	2 cut(s)	121, 973
DpnI	GATC	6 cut(s)	69, 258, 479, 571, 789, 970
DpnII	GATC	6 cut(s)	67, 256, 477, 569, 787, 968
Eam1104I	CTCTTC	2 cut(s)	604, 997
EarI	CTCTTC	2 cut(s)	604, 997
EciI	GGCGGA	3 cut(s)	340, 391, 1234
Eco130I	CCWWGG	1 cut(s)	611
Eco47I	GGWCC	1 cut(s)	277
Eco72I	CACGTG	1 cut(s)	190
Eco81I	CCTNAGG	1 cut(s)	973
Eco88I	CYCGRG	2 cut(s)	30, 1214
EcoO109I	RGGNCCY	1 cut(s)	1277
EcoRI	GAATTC	1 cut(s)	892
EcoRII	CCWGG	1 cut(s)	1105
EcoT14I	CCWWGG	1 cut(s)	611
ErhI	CCWWGG	1 cut(s)	611
FaiI	YATR	8 cut(s)	264, 407, 909, 1034, 1247, 1249, 1251, 1253
FaqI	GGGAC	4 cut(s)	80, 290, 1166, 1197
FblI	GTMKAC	2 cut(s)	208, 312
FokI	GGATG	4 cut(s)	160, 458, 559, 1178
FspBI	CTAG	5 cut(s)	557, 981, 1058, 1083, 1238
GlaI	GCGC	3 cut(s)	382, 484, 643
GsuI	CTGGAG	2 cut(s)	562, 881
HaeII	RGCGCY	2 cut(s)	384, 645
HaeIII	GGCC	3 cut(s)	131, 1104, 1278
HapII	CCGG	4 cut(s)	475, 501, 698, 1215
HgaI	GACGC	3 cut(s)	339, 377, 474
HhaI	GCGC	3 cut(s)	383, 485, 644
Hin6I	GCGC	3 cut(s)	381, 483, 642
HinP1I	GCGC	3 cut(s)	381, 483, 642
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	2 cut(s)	583, 924
HinfI	GANTC	6 cut(s)	24, 33, 362, 438, 466, 596
HpaII	CCGG	4 cut(s)	475, 501, 698, 1215
HphI	GGTGA	4 cut(s)	31, 313, 378, 784
Hpy166II	GTNNAC	4 cut(s)	113, 209, 313, 442
Hpy188I	TCNGA	6 cut(s)	23, 229, 367, 720, 784, 1021
Hpy188III	TCNNGA	6 cut(s)	30, 475, 579, 975, 1083, 1132
Hpy8I	GTNNAC	4 cut(s)	113, 209, 313, 442
Hpy99I	CGWCG	7 cut(s)	233, 236, 333, 371, 438, 466, 536
HpyAV	CCTTC	6 cut(s)	55, 108, 406, 512, 892, 992
HpyCH4III	ACNGT	2 cut(s)	150, 732
HpyCH4IV	ACGT	4 cut(s)	10, 189, 297, 1099
HpyCH4V	TGCA	5 cut(s)	735, 874, 965, 1044, 1200
HpyF10VI	GCNNNNNNNGC	7 cut(s)	519, 522, 613, 698, 703, 871, 1197
HpyF3I	CTNAG	2 cut(s)	121, 973
HpySE526I	ACGT	4 cut(s)	10, 189, 297, 1099
HspAI	GCGC	3 cut(s)	381, 483, 642
Kpn2I	TCCGGA	1 cut(s)	474
KroI	GCCGGC	1 cut(s)	697
KroNI	GCCGGC	1 cut(s)	699
Kzo9I	GATC	6 cut(s)	67, 256, 477, 569, 787, 968
LmnI	GCTCC	6 cut(s)	633, 856, 862, 901, 977, 985
Lsp1109I	GCAGC	4 cut(s)	525, 648, 651, 858
LweI	GCATC	4 cut(s)	480, 913, 1053, 1200
MaeI	CTAG	5 cut(s)	557, 981, 1058, 1083, 1238
MaeII	ACGT	4 cut(s)	10, 189, 297, 1099
MaeIII	GTNAC	1 cut(s)	1226
MalI	GATC	6 cut(s)	69, 258, 479, 571, 789, 970
MboI	GATC	6 cut(s)	67, 256, 477, 569, 787, 968
MboII	GAAGA	8 cut(s)	251, 463, 554, 591, 630, 787, 1014, 1046
MflI	RGATCY	3 cut(s)	67, 787, 968
MluCI	AATT	1 cut(s)	892
MlyI	GAGTC	4 cut(s)	42, 447, 475, 590
MmeI	TCCRAC	3 cut(s)	252, 390, 1120
MroI	TCCGGA	1 cut(s)	474
MroNI	GCCGGC	1 cut(s)	697
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	1 cut(s)	804
MslI	CAYNNNNRTG	1 cut(s)	1250
MspI	CCGG	4 cut(s)	475, 501, 698, 1215
MspR9I	CCNGG	3 cut(s)	1107, 1215, 1216
Mva1269I	GAATGC	1 cut(s)	1200
MvaI	CCWGG	1 cut(s)	1107
MvnI	CGCG	3 cut(s)	433, 485, 767
MwoI	GCNNNNNNNGC	7 cut(s)	519, 522, 613, 698, 703, 871, 1197
NaeI	GCCGGC	1 cut(s)	699
NciI	CCSGG	2 cut(s)	1215, 1216
NdeII	GATC	6 cut(s)	67, 256, 477, 569, 787, 968
NgoMIV	GCCGGC	1 cut(s)	697
NlaIV	GGNNCC	3 cut(s)	132, 278, 789
NspV	TTCGAA	3 cut(s)	62, 495, 896
PasI	CCCWGGG	1 cut(s)	1106
PcsI	WCGNNNNNNNCGW	2 cut(s)	537, 893
PctI	GAATGC	1 cut(s)	1200
PdiI	GCCGGC	1 cut(s)	699
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	2 cut(s)	24, 362
PleI	GAGTC	4 cut(s)	41, 446, 474, 590
PmaCI	CACGTG	1 cut(s)	190
PmlI	CACGTG	1 cut(s)	190
PpsI	GAGTC	4 cut(s)	41, 446, 474, 590
Ppu21I	YACGTR	1 cut(s)	190
Psp1406I	AACGTT	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	1105
PspCI	CACGTG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	1105
PspN4I	GGNNCC	3 cut(s)	132, 278, 789
PspPI	GGNCC	4 cut(s)	130, 277, 1103, 1277
PstNI	CAGNNNCTG	1 cut(s)	724
PsuI	RGATCY	3 cut(s)	67, 787, 968
RseI	CAYNNNNRTG	1 cut(s)	1250
SaqAI	TTAA	1 cut(s)	804
Sau3AI	GATC	6 cut(s)	67, 256, 477, 569, 787, 968
Sau96I	GGNCC	4 cut(s)	130, 277, 1103, 1277
SchI	GAGTC	4 cut(s)	42, 447, 475, 590
ScrFI	CCNGG	3 cut(s)	1107, 1215, 1216
SfaNI	GCATC	4 cut(s)	480, 913, 1053, 1200
SfcI	CTRYAG	1 cut(s)	205
SfuI	TTCGAA	3 cut(s)	62, 495, 896
SinI	GGWCC	1 cut(s)	277
SmaI	CCCGGG	1 cut(s)	1216
SmiMI	CAYNNNNRTG	1 cut(s)	1250
Sse9I	AATT	1 cut(s)	892
SspMI	CTAG	5 cut(s)	557, 981, 1058, 1083, 1238
StyD4I	CCNGG	3 cut(s)	1105, 1213, 1214
StyI	CCWWGG	1 cut(s)	611
TaaI	ACNGT	2 cut(s)	150, 732
TaiI	ACGT	4 cut(s)	13, 192, 300, 1102
TaqI	TCGA	8 cut(s)	62, 270, 495, 531, 662, 710, 812, 896
TaqII	GACCGA	1 cut(s)	294
TasI	AATT	1 cut(s)	892
TauI	GCSGC	7 cut(s)	204, 525, 528, 607, 610, 647, 677
TfiI	GAWTC	2 cut(s)	24, 362
Tru1I	TTAA	1 cut(s)	804
Tru9I	TTAA	1 cut(s)	804
TseI	GCWGC	4 cut(s)	513, 636, 639, 871
TspDTI	ATGAA	2 cut(s)	90, 251
TspGWI	ACGGA	1 cut(s)	98
TspMI	CCCGGG	1 cut(s)	1214
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	892
XbaI	TCTAGA	1 cut(s)	1082
XmaI	CCCGGG	1 cut(s)	1214
XmiI	GTMKAC	2 cut(s)	208, 312
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	5 cut(s)	557, 981, 1058, 1083, 1238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.