Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0015083

Physical Location & Seq

Genomic Coordinates Forward (+)

7513993 .. 7515557

Gene Structure 1565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g13640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCGAAACGTTTCAGGCTCCGGATATCCAGAGTCATACCTTCCTTCCAATCCTGCCGTTCAAAAGACCCCTCCTCTCTCCCTTCCAATCCCGTCCCTTCATTTCTCCGACCATCCCCCTCACTCAACCACCACCTCTCCACCCCACCTTCCAAACCCCACTACTCATCCTCCATCAAACGCCACGTCTCCTCCGCATTCGGCTGCGGCTTCGGAACCAAACCAACCCTATCCGACGACGATAACGGATCACTGCCGCCGGAGGTATTTGAGTGGGAAAGAGAGGACAAGTGGCACGTGGTTGCCATGGTGGACGAAGACAAAACCCCACGTCGCAAAATCTACACTTCCTCGGCCTCCGCTGACTCCGAACGCGACGACGCCGTTTCACTTTCGTTTTCTCCTCCTCCACCACCGCCTCCGTCCTCGGCGGAGAAGAAGAAAAAACAAAGACTGAGGAAAAAGAAAACAACGACGAGCCGTATGATCCGCTTCAGCACCTCCTCTGCCGAGAGCGGACTCTTCAGCGACGAAGATGAAGAAAACGAAACCCTATTCTCCTTCTCCACAGACTCCTCCGCCGATATATTCACGCGCCACCTGGCAACCATCCGCGAGACGCCCCCTAGGAGGAGGAAGAAGATCAAGAGTAAAGCTAAACGCAGCGTTTCAAGGACGAGTGGTGAGTTTGAGTCCCCTAGGCTGTCGGTGTTTCAGAGGCTGATACCGTGCAGCGTCGACGGGAAGGTCAGGGAGAGTTTCGCGGTGGTGAAGAAGTCGGAGGATCCTTACGAGGACTTCAAGAGGTCGATGATGGAAATGATATTGGAGAAGCAGATGTTTCATGAGAAAGAACTAGAGCAGTTGCTTCACTGCTTCTTGTCTTTGAATGCGAGGGAGCACCATAGGGTTATTGTGCAGGCTTTCTCTGAGATTTGGGAGGGTTTGTTCTGTGGTAGTGCAAGGTCGTCAGGAGCTAGAGTTTCTAGAGCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

333

Amino Acids

37.7

Weight (kDa)

9.64

Isoelectric Point (pI)

59.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	260 - 317	2.2e-26	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18500
fragaria_vesca	FvH4_1g13640
malus_domestica	MD02G1151100.v1.1 MD15G1265600.v1.1
prunus_persica	Prupe.7G152000_v2.0.a1
pyrus_communis	pycom15g23130
rosa_chinensis	RchiOBHm_Chr2g0101991
rosa_laevigata	RLG00000017124
rosa_multiflora	Rmu_co8434933.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140860
rosa_rugosa	Rorug02G0103700
rosa_samantha	Rh2AG151800 Rh2BG157200 Rh2CG157200 Rh2DG157300
rosa_wichuraiana	Rw2G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	746
AccBSI	CCGCTC	1 cut(s)	516
AccI	GTMKAC	1 cut(s)	738
AccII	CGCG	4 cut(s)	375, 595, 615, 764
AccIII	TCCGGA	1 cut(s)	21
AclI	AACGTT	1 cut(s)	10
AclWI	GGATC	4 cut(s)	256, 481, 779, 792
AcuI	CTGAAG	2 cut(s)	478, 508
AcvI	CACGTG	1 cut(s)	298
AcyI	GRCGYC	2 cut(s)	381, 620
AfiI	CCNNNNNNNGG	1 cut(s)	630
AgsI	TTSAA	4 cut(s)	63, 672, 802, 889
AjiI	CACGTC	2 cut(s)	187, 332
AjnI	CCWGG	1 cut(s)	600
AloI	GAACNNNNNNTCC	2 cut(s)	932, 964
AluBI	AGCT	3 cut(s)	656, 977, 992
AluI	AGCT	3 cut(s)	656, 977, 992
Alw21I	GWGCWC	2 cut(s)	903, 994
Alw26I	GTCTC	2 cut(s)	193, 611
AlwI	GGATC	4 cut(s)	256, 481, 779, 792
AlwNI	CAGNNNCTG	1 cut(s)	721
Aor13HI	TCCGGA	1 cut(s)	21
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	3 cut(s)	204, 663, 732
ArsI	GACNNNNNNTTYG	2 cut(s)	171, 203
Asp700I	GAANNNNTTC	1 cut(s)	11
AspA2I	CCTAGG	2 cut(s)	626, 698
AspLEI	GCGC	1 cut(s)	597
AsuHPI	GGTGA	2 cut(s)	695, 781
AvrII	CCTAGG	2 cut(s)	626, 698
BamHI	GGATCC	1 cut(s)	784
BanII	GRGCYC	1 cut(s)	994
BbrPI	CACGTG	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	324
Bbv12I	GWGCWC	2 cut(s)	903, 994
BbvI	GCAGC	3 cut(s)	191, 675, 744
BccI	CCATC	4 cut(s)	121, 182, 617, 808
BceAI	ACGGC	3 cut(s)	42, 368, 465
BciT130I	CCWGG	1 cut(s)	602
BcoDI	GTCTC	2 cut(s)	193, 611
BfaI	CTAG	5 cut(s)	627, 699, 857, 978, 987
BisI	GCNGC	5 cut(s)	205, 208, 257, 664, 733
BlnI	CCTAGG	2 cut(s)	626, 698
BlsI	GCNGC	5 cut(s)	206, 209, 258, 665, 734
Bme1390I	CCNGG	1 cut(s)	602
BmgBI	CACGTC	2 cut(s)	187, 332
BmiI	GGNNCC	3 cut(s)	20, 217, 786
BmrFI	CCNGG	1 cut(s)	602
BpiI	GAAGAC	1 cut(s)	324
BsaAI	YACGTR	1 cut(s)	298
BsaHI	GRCGYC	2 cut(s)	381, 620
BsaJI	CCNNGG	5 cut(s)	306, 351, 426, 626, 698
BsaWI	WCCGGW	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	630
BseAI	TCCGGA	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	602
BseDI	CCNNGG	5 cut(s)	306, 351, 426, 626, 698
BseGI	GGATG	3 cut(s)	113, 167, 609
BseLI	CCNNNNNNNGG	1 cut(s)	630
BseMII	CTCAG	2 cut(s)	446, 921
BseRI	GAGGAG	7 cut(s)	64, 181, 393, 396, 493, 565, 646
BseXI	GCAGC	3 cut(s)	191, 675, 744
BsgI	GTGCAG	2 cut(s)	751, 938
Bsh1236I	CGCG	4 cut(s)	375, 595, 615, 764
BshFI	GGCC	1 cut(s)	356
BsiHKAI	GWGCWC	2 cut(s)	903, 994
BsiSI	CCGG	2 cut(s)	22, 260
BslFI	GGGAC	2 cut(s)	80, 679
BslI	CCNNNNNNNGG	1 cut(s)	630
BsmAI	GTCTC	2 cut(s)	193, 611
BsmBI	CGTCTC	2 cut(s)	193, 611
BsmFI	GGGAC	2 cut(s)	80, 679
BsmI	GAATGC	2 cut(s)	197, 895
BsnI	GGCC	1 cut(s)	356
Bsp1286I	GDGCHC	2 cut(s)	903, 994
Bsp13I	TCCGGA	1 cut(s)	21
Bsp143I	GATC	4 cut(s)	248, 486, 642, 784
Bsp19I	CCATGG	1 cut(s)	306
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	2 cut(s)	447, 922
BspEI	TCCGGA	1 cut(s)	21
BspFNI	CGCG	4 cut(s)	375, 595, 615, 764
BspHI	TCATGA	1 cut(s)	844
BspLI	GGNNCC	3 cut(s)	20, 217, 786
BspPI	GGATC	4 cut(s)	256, 481, 779, 792
BsrBI	CCGCTC	1 cut(s)	516
BssECI	CCNNGG	5 cut(s)	306, 351, 426, 626, 698
BssMI	GATC	4 cut(s)	248, 486, 642, 784
BssNI	GRCGYC	2 cut(s)	381, 620
BssT1I	CCWWGG	3 cut(s)	306, 626, 698
Bst2UI	CCWGG	1 cut(s)	602
Bst4CI	ACNGT	1 cut(s)	729
Bst6I	CTCTTC	1 cut(s)	527
BstACI	GRCGYC	2 cut(s)	381, 620
BstBAI	YACGTR	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	921
BstDEI	CTNAG	2 cut(s)	455, 930
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	3 cut(s)	113, 167, 609
BstFNI	CGCG	4 cut(s)	375, 595, 615, 764
BstHHI	GCGC	1 cut(s)	597
BstKTI	GATC	4 cut(s)	251, 489, 645, 787
BstMAI	GTCTC	2 cut(s)	193, 611
BstMBI	GATC	4 cut(s)	248, 486, 642, 784
BstNI	CCWGG	1 cut(s)	602
BstSCI	CCNGG	1 cut(s)	600
BstUI	CGCG	4 cut(s)	375, 595, 615, 764
BstV1I	GCAGC	3 cut(s)	191, 675, 744
BstV2I	GAAGAC	1 cut(s)	324
BstX2I	RGATCY	1 cut(s)	784
BstYI	RGATCY	1 cut(s)	784
BsuRI	GGCC	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	306
BtrI	CACGTC	2 cut(s)	187, 332
BtsCI	GGATG	3 cut(s)	113, 167, 609
BtsI	GCAGTG	2 cut(s)	251, 871
BtsIMutI	CAGTG	2 cut(s)	251, 871
Cac8I	GCNNGC	1 cut(s)	921
CaiI	CAGNNNCTG	1 cut(s)	721
CciI	TCATGA	1 cut(s)	844
CfoI	GCGC	1 cut(s)	597
CseI	GACGC	3 cut(s)	389, 628, 724
CviAII	CATG	2 cut(s)	307, 845
DdeI	CTNAG	2 cut(s)	455, 930
DpnI	GATC	4 cut(s)	250, 488, 644, 786
DpnII	GATC	4 cut(s)	248, 486, 642, 784
DrdI	GACNNNNNNGTC	1 cut(s)	746
DseDI	GACNNNNNNGTC	1 cut(s)	746
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
EciI	GGCGGA	2 cut(s)	446, 568
Ecl136II	GAGCTC	1 cut(s)	992
Eco130I	CCWWGG	3 cut(s)	306, 626, 698
Eco24I	GRGCYC	1 cut(s)	994
Eco32I	GATATC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	992
Eco57I	CTGAAG	2 cut(s)	478, 508
Eco72I	CACGTG	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	992
EcoRII	CCWGG	1 cut(s)	600
EcoRV	GATATC	1 cut(s)	27
EcoT14I	CCWWGG	3 cut(s)	306, 626, 698
EcoT38I	GRGCYC	1 cut(s)	994
ErhI	CCWWGG	3 cut(s)	306, 626, 698
Esp3I	CGTCTC	2 cut(s)	193, 611
FaeI	CATG	2 cut(s)	310, 848
FaiI	YATR	6 cut(s)	38, 308, 485, 587, 846, 906
FaqI	GGGAC	2 cut(s)	80, 679
FatI	CATG	2 cut(s)	306, 844
FblI	GTMKAC	1 cut(s)	738
Fnu4HI	GCNGC	5 cut(s)	205, 208, 257, 664, 733
FokI	GGATG	3 cut(s)	100, 154, 596
FriOI	GRGCYC	1 cut(s)	994
Fsp4HI	GCNGC	5 cut(s)	205, 208, 257, 664, 733
FspBI	CTAG	5 cut(s)	627, 699, 857, 978, 987
GlaI	GCGC	1 cut(s)	596
GluI	GCNGC	5 cut(s)	205, 208, 257, 664, 733
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	2 cut(s)	22, 260
HgaI	GACGC	3 cut(s)	389, 628, 724
HhaI	GCGC	1 cut(s)	597
Hin1I	GRCGYC	2 cut(s)	381, 620
Hin1II	CATG	2 cut(s)	310, 848
Hin6I	GCGC	1 cut(s)	595
HinP1I	GCGC	1 cut(s)	595
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HinfI	GANTC	5 cut(s)	33, 365, 519, 572, 692
HpaII	CCGG	2 cut(s)	22, 260
HphI	GGTGA	2 cut(s)	695, 781
Hpy166II	GTNNAC	2 cut(s)	313, 739
Hpy188I	TCNGA	7 cut(s)	110, 215, 235, 370, 717, 781, 931
Hpy188III	TCNNGA	7 cut(s)	22, 30, 646, 802, 845, 972, 987
Hpy8I	GTNNAC	2 cut(s)	313, 739
Hpy99I	CGWCG	9 cut(s)	239, 242, 336, 380, 383, 478, 533, 740, 743
HpyAV	CCTTC	7 cut(s)	51, 55, 93, 108, 159, 571, 739
HpyCH4III	ACNGT	1 cut(s)	729
HpyCH4IV	ACGT	4 cut(s)	10, 186, 297, 331
HpyCH4V	TGCA	3 cut(s)	732, 919, 962
HpyF3I	CTNAG	2 cut(s)	455, 930
HpySE526I	ACGT	4 cut(s)	10, 186, 297, 331
Hsp92I	GRCGYC	2 cut(s)	381, 620
Hsp92II	CATG	2 cut(s)	310, 848
HspAI	GCGC	1 cut(s)	595
Kpn2I	TCCGGA	1 cut(s)	21
Kzo9I	GATC	4 cut(s)	248, 486, 642, 784
LmnI	GCTCC	3 cut(s)	24, 898, 974
LpnPI	CCDG	9 cut(s)	35, 43, 67, 273, 587, 614, 736, 905, 957
Lsp1109I	GCAGC	3 cut(s)	191, 675, 744
MaeI	CTAG	5 cut(s)	627, 699, 857, 978, 987
MaeII	ACGT	4 cut(s)	10, 186, 297, 331
MalI	GATC	4 cut(s)	250, 488, 644, 786
MbiI	CCGCTC	1 cut(s)	516
MboI	GATC	4 cut(s)	248, 486, 642, 784
MboII	GAAGA	9 cut(s)	329, 448, 451, 514, 545, 551, 649, 652, 784
MflI	RGATCY	1 cut(s)	784
MhlI	GDGCHC	2 cut(s)	903, 994
MlyI	GAGTC	5 cut(s)	42, 359, 513, 566, 701
MmeI	TCCRAC	3 cut(s)	133, 258, 759
MroI	TCCGGA	1 cut(s)	21
MroXI	GAANNNNTTC	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	2 cut(s)	22, 260
MspR9I	CCNGG	1 cut(s)	602
Mva1269I	GAATGC	2 cut(s)	197, 895
MvaI	CCWGG	1 cut(s)	602
MvnI	CGCG	4 cut(s)	375, 595, 615, 764
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	4 cut(s)	248, 486, 642, 784
NlaIII	CATG	2 cut(s)	310, 848
NlaIV	GGNNCC	3 cut(s)	20, 217, 786
NmeAIII	GCCGAG	3 cut(s)	332, 407, 535
PagI	TCATGA	1 cut(s)	844
PctI	GAATGC	2 cut(s)	197, 895
PdmI	GAANNNNTTC	1 cut(s)	11
PkrI	GCNGC	5 cut(s)	206, 209, 258, 665, 734
PleI	GAGTC	5 cut(s)	41, 359, 513, 566, 700
PmaCI	CACGTG	1 cut(s)	298
PmlI	CACGTG	1 cut(s)	298
PpsI	GAGTC	5 cut(s)	41, 359, 513, 566, 700
Ppu21I	YACGTR	1 cut(s)	298
Psp124BI	GAGCTC	1 cut(s)	994
Psp1406I	AACGTT	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	600
PspCI	CACGTG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	600
PspN4I	GGNNCC	3 cut(s)	20, 217, 786
PstNI	CAGNNNCTG	1 cut(s)	721
PsuI	RGATCY	1 cut(s)	784
SacI	GAGCTC	1 cut(s)	994
SalI	GTCGAC	1 cut(s)	737
SatI	GCNGC	5 cut(s)	205, 208, 257, 664, 733
Sau3AI	GATC	4 cut(s)	248, 486, 642, 784
SchI	GAGTC	5 cut(s)	42, 359, 513, 566, 701
ScrFI	CCNGG	1 cut(s)	602
SduI	GDGCHC	2 cut(s)	903, 994
SgrDI	CGTCGACG	1 cut(s)	737
SspMI	CTAG	5 cut(s)	627, 699, 857, 978, 987
SstI	GAGCTC	1 cut(s)	994
StyD4I	CCNGG	1 cut(s)	600
StyI	CCWWGG	3 cut(s)	306, 626, 698
TaaI	ACNGT	1 cut(s)	729
TaiI	ACGT	4 cut(s)	13, 189, 300, 334
TaqI	TCGA	2 cut(s)	738, 809
TauI	GCSGC	2 cut(s)	210, 259
TscAI	CASTG	2 cut(s)	258, 878
TseI	GCWGC	3 cut(s)	204, 663, 732
TspDTI	ATGAA	3 cut(s)	90, 552, 833
TspGWI	ACGGA	2 cut(s)	261, 411
TspRI	CASTG	2 cut(s)	258, 878
XbaI	TCTAGA	1 cut(s)	986
XmaJI	CCTAGG	2 cut(s)	626, 698
XmiI	GTMKAC	1 cut(s)	738
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	5 cut(s)	627, 699, 857, 978, 987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.