Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0015083

Physical Location & Seq

Genomic Coordinates Forward (+)

22780138 .. 22781265

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1265600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCAAAACGTTTCAAGCTCCGATTCTCCCGAGTCATCACCTCCTTCCATTCCTGCCGTTCGGAAGATCCCTCCACTCTCCCCTCAAATCCTGTCCCTTCATTCCTCCGTCCACCCCCCTTAGCCACGGCCCCGACACCACCTCTACCCTCCAAAACCCACCACCACTCCTCATCCATCAAACGCCACGTGTTATTTTGCGGCTGTAGACCCAGACCAACGCTCTCCGACGACGACCACACCAAATCACCGCCCGATCTTCATAAGTTCGAGTGGGACCGAGAGGACAAGTGGCACGTGGTGGCCAAAGTCTACGACATCACCCCCCGACGCAAAATCTACACTTCCTCCGCCTCGCCCGAATCCGACGCAAACGACGGCGCTTCACCTCCTCCCTCCTCCGCCATAGAGAAGGAACAAAAGAAGAAAACTCGTCGAGTCAACAGAAAGAAGAAAAGAACGACGAGTCGCATCCGTATCAGCACGTCCTCGTTCGAAACAGGACTTTTCAGCAGCGAAGGCGGCGGCTTCGACGATGGCGAAGAAACCGAAACCCTAGTCTCCACCAGATCATCCTCCAGAAGCTTCTCCACCGACTCCTCGCCGCCGACAAGGCGAAGAAAAAAGAAGCGGAGCAGCAGCGCCGTCAGACGCAGCTTTTCGAGGAAGTCTGCGGCTGGGGAGAGCGAAGCTGTGCCGGCAAGACTGTCGATGTTTCAGAGGTTGATACCGTGCAGGGTGGAGGGAAAAGTGAGGGAGAGCTTCGCGGTGGTGAAGAAATCAGAGGATCCGGTTATTGTTGAAGTTTTCACAGAGATTTGGGAGGGTTTGTTCTGTTGTAGTGCAAGATCCTCAGGAGCTAGGGTTTCTAGGGCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

294

Amino Acids

32.82

Weight (kDa)

10.23

Isoelectric Point (pI)

78.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18500
fragaria_vesca	FvH4_1g13640
malus_domestica	MD02G1151100.v1.1 MD15G1265600.v1.1
prunus_persica	Prupe.7G152000_v2.0.a1
pyrus_communis	pycom15g23130
rosa_chinensis	RchiOBHm_Chr2g0101991
rosa_laevigata	RLG00000017124
rosa_multiflora	Rmu_co8434933.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140860
rosa_rugosa	Rorug02G0103700
rosa_samantha	Rh2AG151800 Rh2BG157200 Rh2CG157200 Rh2DG157300
rosa_wichuraiana	Rw2G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	208, 312
AccII	CGCG	1 cut(s)	767
AclI	AACGTT	1 cut(s)	10
AclWI	GGATC	4 cut(s)	62, 782, 795, 843
AcoI	YGGCCR	1 cut(s)	303
AcvI	CACGTG	2 cut(s)	190, 298
AdeI	CACNNNGTG	1 cut(s)	301
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	2 cut(s)	16, 803
AjiI	CACGTC	1 cut(s)	486
AloI	GAACNNNNNNTCC	2 cut(s)	815, 847
AluBI	AGCT	6 cut(s)	19, 585, 657, 692, 762, 860
AluI	AGCT	6 cut(s)	19, 585, 657, 692, 762, 860
Alw26I	GTCTC	1 cut(s)	565
AlwI	GGATC	4 cut(s)	62, 782, 795, 843
Ama87I	CYCGRG	1 cut(s)	30
AoxI	GGCC	2 cut(s)	129, 303
ApeKI	GCWGC	4 cut(s)	513, 636, 639, 654
ArsI	GACNNNNNNTTYG	2 cut(s)	543, 575
AspLEI	GCGC	2 cut(s)	383, 644
AspS9I	GGNCC	2 cut(s)	130, 277
AsuHPI	GGTGA	5 cut(s)	31, 240, 313, 378, 784
AsuII	TTCGAA	1 cut(s)	495
AvaI	CYCGRG	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	277
AxyI	CCTNAGG	1 cut(s)	853
BalI	TGGCCA	1 cut(s)	305
BamHI	GGATCC	1 cut(s)	787
BanII	GRGCYC	1 cut(s)	877
BbrPI	CACGTG	2 cut(s)	190, 298
BbvI	GCAGC	4 cut(s)	525, 648, 651, 666
BccI	CCATC	2 cut(s)	185, 530
BceAI	ACGGC	4 cut(s)	42, 144, 394, 629
BcgI	CGANNNNNNTGC	2 cut(s)	690, 724
BcoDI	GTCTC	1 cut(s)	565
BfaI	CTAG	3 cut(s)	557, 861, 870
BfmI	CTRYAG	1 cut(s)	205
BfoI	RGCGCY	2 cut(s)	384, 645
BglI	GCCNNNNNGGC	1 cut(s)	613
BisI	GCNGC	9 cut(s)	202, 514, 523, 526, 605, 637, 640, 655, 675
BlsI	GCNGC	9 cut(s)	203, 515, 524, 527, 606, 638, 641, 656, 676
Bme18I	GGWCC	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	30
BmgBI	CACGTC	1 cut(s)	486
BmgT120I	GGNCC	2 cut(s)	130, 277
BmiI	GGNNCC	3 cut(s)	132, 278, 789
BmsI	GCATC	1 cut(s)	480
BpmI	CTGGAG	1 cut(s)	562
Bpu10I	CCTNAGC	1 cut(s)	121
Bpu14I	TTCGAA	1 cut(s)	495
BsaAI	YACGTR	2 cut(s)	190, 298
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	790
BsaXI	ACNNNNNCTCC	8 cut(s)	152, 182, 332, 362, 815, 845, 849, 879
Bse118I	RCCGGY	1 cut(s)	697
Bse21I	CCTNAGG	1 cut(s)	853
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	3 cut(s)	173, 471, 572
BseMII	CTCAG	1 cut(s)	867
BseRI	GAGGAG	4 cut(s)	160, 381, 388, 589
BseXI	GCAGC	4 cut(s)	525, 648, 651, 666
BseYI	CCCAGC	1 cut(s)	677
BsgI	GTGCAG	1 cut(s)	754
Bsh1236I	CGCG	1 cut(s)	767
BshFI	GGCC	2 cut(s)	131, 305
BsiHKCI	CYCGRG	1 cut(s)	30
BsiSI	CCGG	2 cut(s)	698, 791
BslFI	GGGAC	2 cut(s)	80, 290
BsmAI	GTCTC	1 cut(s)	565
BsmFI	GGGAC	2 cut(s)	80, 290
BsnI	GGCC	2 cut(s)	131, 305
BsoBI	CYCGRG	1 cut(s)	30
Bsp119I	TTCGAA	1 cut(s)	495
Bsp1286I	GDGCHC	1 cut(s)	877
Bsp143I	GATC	5 cut(s)	67, 256, 569, 787, 848
BspANI	GGCC	2 cut(s)	131, 305
BspCNI	CTCAG	1 cut(s)	866
BspFNI	CGCG	1 cut(s)	767
BspLI	GGNNCC	3 cut(s)	132, 278, 789
BspPI	GGATC	4 cut(s)	62, 782, 795, 843
BspT104I	TTCGAA	1 cut(s)	495
BsrFI	RCCGGY	1 cut(s)	697
BssAI	RCCGGY	1 cut(s)	697
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	5 cut(s)	67, 256, 569, 787, 848
Bst4CI	ACNGT	2 cut(s)	708, 732
BstBAI	YACGTR	2 cut(s)	190, 298
BstBI	TTCGAA	1 cut(s)	495
BstC8I	GCNNGC	1 cut(s)	699
BstDEI	CTNAG	2 cut(s)	121, 853
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	3 cut(s)	173, 471, 572
BstFNI	CGCG	1 cut(s)	767
BstH2I	RGCGCY	2 cut(s)	384, 645
BstHHI	GCGC	2 cut(s)	383, 644
BstKTI	GATC	5 cut(s)	70, 259, 572, 790, 851
BstMAI	GTCTC	1 cut(s)	565
BstMBI	GATC	5 cut(s)	67, 256, 569, 787, 848
BstMWI	GCNNNNNNNGC	4 cut(s)	519, 522, 613, 698
BstSFI	CTRYAG	1 cut(s)	205
BstUI	CGCG	1 cut(s)	767
BstV1I	GCAGC	4 cut(s)	525, 648, 651, 666
BstX2I	RGATCY	3 cut(s)	67, 787, 848
BstYI	RGATCY	3 cut(s)	67, 787, 848
Bsu36I	CCTNAGG	1 cut(s)	853
BsuRI	GGCC	2 cut(s)	131, 305
BtgI	CCRYGG	1 cut(s)	126
BtrI	CACGTC	1 cut(s)	486
BtsCI	GGATG	3 cut(s)	173, 471, 572
Cac8I	GCNNGC	1 cut(s)	699
CfoI	GCGC	2 cut(s)	383, 644
Cfr10I	RCCGGY	1 cut(s)	697
Cfr13I	GGNCC	2 cut(s)	130, 277
CseI	GACGC	3 cut(s)	339, 377, 660
DdeI	CTNAG	2 cut(s)	121, 853
DpnI	GATC	5 cut(s)	69, 258, 571, 789, 850
DpnII	GATC	5 cut(s)	67, 256, 569, 787, 848
DraIII	CACNNNGTG	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	303
EciI	GGCGGA	2 cut(s)	340, 391
Eco24I	GRGCYC	1 cut(s)	877
Eco47I	GGWCC	1 cut(s)	277
Eco72I	CACGTG	2 cut(s)	190, 298
Eco81I	CCTNAGG	1 cut(s)	853
Eco88I	CYCGRG	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	877
FaiI	YATR	2 cut(s)	264, 407
FaqI	GGGAC	2 cut(s)	80, 290
FblI	GTMKAC	2 cut(s)	208, 312
Fnu4HI	GCNGC	9 cut(s)	202, 514, 523, 526, 605, 637, 640, 655, 675
FokI	GGATG	3 cut(s)	160, 458, 559
FriOI	GRGCYC	1 cut(s)	877
Fsp4HI	GCNGC	9 cut(s)	202, 514, 523, 526, 605, 637, 640, 655, 675
FspBI	CTAG	3 cut(s)	557, 861, 870
GlaI	GCGC	2 cut(s)	382, 643
GluI	GCNGC	9 cut(s)	202, 514, 523, 526, 605, 637, 640, 655, 675
GsaI	CCCAGC	1 cut(s)	681
GsuI	CTGGAG	1 cut(s)	562
HaeII	RGCGCY	2 cut(s)	384, 645
HaeIII	GGCC	2 cut(s)	131, 305
HapII	CCGG	2 cut(s)	698, 791
HgaI	GACGC	3 cut(s)	339, 377, 660
HhaI	GCGC	2 cut(s)	383, 644
Hin6I	GCGC	2 cut(s)	381, 642
HinP1I	GCGC	2 cut(s)	381, 642
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	583
HinfI	GANTC	6 cut(s)	24, 33, 362, 438, 466, 596
HpaII	CCGG	2 cut(s)	698, 791
HphI	GGTGA	5 cut(s)	31, 240, 313, 378, 784
Hpy166II	GTNNAC	4 cut(s)	113, 209, 313, 442
Hpy188I	TCNGA	7 cut(s)	23, 64, 229, 367, 650, 720, 784
Hpy188III	TCNNGA	3 cut(s)	30, 579, 855
Hpy8I	GTNNAC	4 cut(s)	113, 209, 313, 442
Hpy99I	CGWCG	8 cut(s)	233, 236, 333, 371, 380, 438, 466, 536
HpyAV	CCTTC	4 cut(s)	55, 108, 406, 512
HpyCH4III	ACNGT	2 cut(s)	708, 732
HpyCH4IV	ACGT	4 cut(s)	10, 189, 297, 485
HpyCH4V	TGCA	2 cut(s)	735, 845
HpyF10VI	GCNNNNNNNGC	4 cut(s)	519, 522, 613, 698
HpyF3I	CTNAG	2 cut(s)	121, 853
HpySE526I	ACGT	4 cut(s)	10, 189, 297, 485
HspAI	GCGC	2 cut(s)	381, 642
KroI	GCCGGC	1 cut(s)	697
KroNI	GCCGGC	1 cut(s)	699
Kzo9I	GATC	5 cut(s)	67, 256, 569, 787, 848
LmnI	GCTCC	3 cut(s)	24, 633, 857
Lsp1109I	GCAGC	4 cut(s)	525, 648, 651, 666
LweI	GCATC	1 cut(s)	480
MaeI	CTAG	3 cut(s)	557, 861, 870
MaeII	ACGT	4 cut(s)	10, 189, 297, 485
MalI	GATC	5 cut(s)	69, 258, 571, 789, 850
MboI	GATC	5 cut(s)	67, 256, 569, 787, 848
MboII	GAAGA	7 cut(s)	77, 251, 436, 463, 554, 630, 787
MflI	RGATCY	3 cut(s)	67, 787, 848
MhlI	GDGCHC	1 cut(s)	877
MlsI	TGGCCA	1 cut(s)	305
MluNI	TGGCCA	1 cut(s)	305
MlyI	GAGTC	4 cut(s)	42, 447, 475, 590
MmeI	TCCRAC	2 cut(s)	252, 390
Mox20I	TGGCCA	1 cut(s)	305
MroNI	GCCGGC	1 cut(s)	697
MscI	TGGCCA	1 cut(s)	305
Msp20I	TGGCCA	1 cut(s)	305
MspI	CCGG	2 cut(s)	698, 791
MvnI	CGCG	1 cut(s)	767
MwoI	GCNNNNNNNGC	4 cut(s)	519, 522, 613, 698
NaeI	GCCGGC	1 cut(s)	699
NdeII	GATC	5 cut(s)	67, 256, 569, 787, 848
NgoMIV	GCCGGC	1 cut(s)	697
NlaIV	GGNNCC	3 cut(s)	132, 278, 789
NspV	TTCGAA	1 cut(s)	495
PcsI	WCGNNNNNNNCGW	1 cut(s)	537
PdiI	GCCGGC	1 cut(s)	699
PfeI	GAWTC	2 cut(s)	24, 362
PkrI	GCNGC	9 cut(s)	203, 515, 524, 527, 606, 638, 641, 656, 676
PleI	GAGTC	4 cut(s)	41, 446, 474, 590
PmaCI	CACGTG	2 cut(s)	190, 298
PmlI	CACGTG	2 cut(s)	190, 298
PpsI	GAGTC	4 cut(s)	41, 446, 474, 590
Ppu21I	YACGTR	2 cut(s)	190, 298
Psp1406I	AACGTT	1 cut(s)	10
PspCI	CACGTG	2 cut(s)	190, 298
PspFI	CCCAGC	1 cut(s)	677
PspN4I	GGNNCC	3 cut(s)	132, 278, 789
PspPI	GGNCC	2 cut(s)	130, 277
PsuI	RGATCY	3 cut(s)	67, 787, 848
SatI	GCNGC	9 cut(s)	202, 514, 523, 526, 605, 637, 640, 655, 675
Sau3AI	GATC	5 cut(s)	67, 256, 569, 787, 848
Sau96I	GGNCC	2 cut(s)	130, 277
SchI	GAGTC	4 cut(s)	42, 447, 475, 590
SduI	GDGCHC	1 cut(s)	877
SfaNI	GCATC	1 cut(s)	480
SfcI	CTRYAG	1 cut(s)	205
SfuI	TTCGAA	1 cut(s)	495
SinI	GGWCC	1 cut(s)	277
SspMI	CTAG	3 cut(s)	557, 861, 870
TaaI	ACNGT	2 cut(s)	708, 732
TaiI	ACGT	4 cut(s)	13, 192, 300, 488
TaqI	TCGA	6 cut(s)	270, 436, 495, 531, 662, 710
TaqII	GACCGA	1 cut(s)	294
TauI	GCSGC	5 cut(s)	204, 525, 528, 607, 677
TfiI	GAWTC	2 cut(s)	24, 362
TseI	GCWGC	4 cut(s)	513, 636, 639, 654
TspDTI	ATGAA	2 cut(s)	90, 251
TspGWI	ACGGA	2 cut(s)	98, 464
VpaK11BI	GGWCC	1 cut(s)	277
XmiI	GTMKAC	2 cut(s)	208, 312
XspI	CTAG	3 cut(s)	557, 861, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.