Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0015083

Physical Location & Seq

Genomic Coordinates Forward (+)

12466155 .. 12467117

Gene Structure 963 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1151100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCGAAACGTTTCAAGCTCCGATTCTCCCGAGTCATCCCCTCCTTCCATTCCTGCCGTTCAAAAGACCCCTCCACTCTCCCCTCAAATCCTGTCCCTTCCTTAGCCACCGCCCCAACACCACCTCTACCCTCCAAAACCCACCACCACTCTTCATCCATCAAACGCCACGTTTTACTCTGCGGTTGCCGACCAAGACCAACACTCTCCGACGACGATCGCAGGGAATCAACCCCCGATCTTCATAAGTTTGAGTGGGACCGAGAGGACAAGTGGCACGTGGTCGGAAAAGTCTACGACATCAACCCCCGACGCAAAATCTACACTTCCTCCGCCTCGCCCGACTCCAACGCAAACGACAGCGTTTCTCCTCCTCCCTCCTCCGCCATAGAGAAGGAACAAAAGAAGAAAACGCGACGAGTCAACAGAAAGAAGAAAAGAACGACGAGTCGCATCCGGATCAGCACGTCCTCGTTCGAAGCCGGACTTTCCAGCAGCGAAGGCGGCGGCGGCGGCTTCGACGACGGCGAAGAAACCAAAACCCTAGTCTCCACCGGATCATCCTCCAGAAGCTTGTCCACCGACTCCTCGCCGCTGACAGGGCGAAGAAAGAAGAAGCGGAGCAGCAGCGCCGCCAGGCGCAGTGTTTCAAGGAAGTCGGCGGCGGGGGAGAGCGAAGCCGTGCCGGCGAGGCTGTCGATGTTTCAGAGACTGATACCGTGCAGGGTGGAGGGAAAAGTGAGGGAGAGCTTCGCGGTGGTGAAGAAGTCGGAGGATCCGTACGAGGATTTTAAGAGGTCGATGATGGAGATGGTTTTGGAAAAGCAGATGTTTGAGGAGAGGGAACTGGAGCAACTGCTGCATTGCTTCTTGTCGTTGAATTCGAGAGAGCATCATAGGGTTATTGTTGAAGCTTTCACTGAGATTTGGGAGGGTTTGTTCTGTTGTAGTGCAAGATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

321

Amino Acids

36.08

Weight (kDa)

9.88

Isoelectric Point (pI)

69.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	257 - 314	1.5e-26	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015083)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18500
fragaria_vesca	FvH4_1g13640
malus_domestica	MD02G1151100.v1.1 MD15G1265600.v1.1
prunus_persica	Prupe.7G152000_v2.0.a1
pyrus_communis	pycom15g23130
rosa_chinensis	RchiOBHm_Chr2g0101991
rosa_laevigata	RLG00000017124
rosa_multiflora	Rmu_co8434933.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140860
rosa_rugosa	Rorug02G0103700
rosa_samantha	Rh2AG151800 Rh2BG157200 Rh2CG157200 Rh2DG157300
rosa_wichuraiana	Rw2G011850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	2 cut(s)	415, 755
AccIII	TCCGGA	1 cut(s)	456
AclI	AACGTT	1 cut(s)	10
AclWI	GGATC	5 cut(s)	467, 565, 770, 783, 951
AcsI	RAATTY	1 cut(s)	880
AcvI	CACGTG	1 cut(s)	280
AfaI	GTAC	1 cut(s)	782
AfiI	CCNNNNNNNGG	1 cut(s)	599
AgsI	TTSAA	5 cut(s)	16, 63, 651, 880, 911
AjiI	CACGTC	1 cut(s)	468
AjnI	CCWGG	1 cut(s)	635
AloI	GAACNNNNNNTCC	2 cut(s)	923, 955
AluBI	AGCT	4 cut(s)	19, 573, 750, 914
AluI	AGCT	4 cut(s)	19, 573, 750, 914
Alw26I	GTCTC	2 cut(s)	553, 703
AlwI	GGATC	5 cut(s)	467, 565, 770, 783, 951
AlwNI	CAGNNNCTG	1 cut(s)	712
Ama87I	CYCGRG	1 cut(s)	30
Aor13HI	TCCGGA	1 cut(s)	456
ApeKI	GCWGC	4 cut(s)	495, 624, 627, 859
ApoI	RAATTY	1 cut(s)	880
ArsI	GACNNNNNNTTYG	2 cut(s)	531, 563
Asp700I	GAANNNNTTC	1 cut(s)	11
AspLEI	GCGC	2 cut(s)	632, 642
AspS9I	GGNCC	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	772
AsuII	TTCGAA	1 cut(s)	477
AvaI	CYCGRG	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	259
BamHI	GGATCC	1 cut(s)	775
BbrPI	CACGTG	1 cut(s)	280
BbvI	GCAGC	4 cut(s)	507, 636, 639, 846
BccI	CCATC	3 cut(s)	167, 799, 805
BceAI	ACGGC	3 cut(s)	42, 541, 665
BciT130I	CCWGG	1 cut(s)	637
BcoDI	GTCTC	2 cut(s)	553, 703
BfaI	CTAG	1 cut(s)	545
BfoI	RGCGCY	1 cut(s)	633
BglI	GCCNNNNNGGC	2 cut(s)	686, 691
Bme1390I	CCNGG	1 cut(s)	637
Bme18I	GGWCC	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	30
BmgBI	CACGTC	1 cut(s)	468
BmgT120I	GGNCC	1 cut(s)	259
BmiI	GGNNCC	2 cut(s)	260, 777
BmrFI	CCNGG	1 cut(s)	637
BmsI	GCATC	2 cut(s)	462, 901
BpmI	CTGGAG	2 cut(s)	550, 869
Bpu10I	CCTNAGC	1 cut(s)	103
Bpu14I	TTCGAA	1 cut(s)	477
BsaAI	YACGTR	1 cut(s)	280
BsaWI	WCCGGW	2 cut(s)	456, 554
BsaXI	ACNNNNNCTCC	6 cut(s)	314, 344, 764, 794, 923, 953
Bsc4I	CCNNNNNNNGG	1 cut(s)	599
Bse118I	RCCGGY	1 cut(s)	685
Bse1I	ACTGG	1 cut(s)	852
Bse3DI	GCAATG	1 cut(s)	862
BseAI	TCCGGA	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	637
BseGI	GGATG	4 cut(s)	36, 155, 453, 560
BseLI	CCNNNNNNNGG	1 cut(s)	599
BseMI	GCAATG	1 cut(s)	862
BseMII	CTCAG	1 cut(s)	912
BseNI	ACTGG	1 cut(s)	852
BseRI	GAGGAG	5 cut(s)	360, 363, 370, 577, 851
BseXI	GCAGC	4 cut(s)	507, 636, 639, 846
BsgI	GTGCAG	1 cut(s)	742
Bsh1236I	CGCG	2 cut(s)	415, 755
Bsh1285I	CGRYCG	1 cut(s)	220
BsiEI	CGRYCG	1 cut(s)	220
BsiHKCI	CYCGRG	1 cut(s)	30
BsiSI	CCGG	4 cut(s)	457, 483, 555, 686
BsiWI	CGTACG	1 cut(s)	780
BslFI	GGGAC	2 cut(s)	80, 272
BslI	CCNNNNNNNGG	1 cut(s)	599
BsmAI	GTCTC	2 cut(s)	553, 703
BsmFI	GGGAC	2 cut(s)	80, 272
BsoBI	CYCGRG	1 cut(s)	30
Bsp119I	TTCGAA	1 cut(s)	477
Bsp13I	TCCGGA	1 cut(s)	456
Bsp143I	GATC	6 cut(s)	217, 238, 459, 557, 775, 956
BspCNI	CTCAG	1 cut(s)	913
BspEI	TCCGGA	1 cut(s)	456
BspFNI	CGCG	2 cut(s)	415, 755
BspLI	GGNNCC	2 cut(s)	260, 777
BspPI	GGATC	5 cut(s)	467, 565, 770, 783, 951
BspT104I	TTCGAA	1 cut(s)	477
BsrDI	GCAATG	1 cut(s)	862
BsrFI	RCCGGY	1 cut(s)	685
BsrI	ACTGG	1 cut(s)	852
BssAI	RCCGGY	1 cut(s)	685
BssMI	GATC	6 cut(s)	217, 238, 459, 557, 775, 956
Bst2UI	CCWGG	1 cut(s)	637
Bst4CI	ACNGT	1 cut(s)	720
Bst6I	CTCTTC	1 cut(s)	157
BstAPI	GCANNNNNTGC	1 cut(s)	859
BstBAI	YACGTR	1 cut(s)	280
BstBI	TTCGAA	1 cut(s)	477
BstC8I	GCNNGC	1 cut(s)	687
BstDEI	CTNAG	2 cut(s)	103, 921
BstF5I	GGATG	4 cut(s)	36, 155, 453, 560
BstFNI	CGCG	2 cut(s)	415, 755
BstH2I	RGCGCY	1 cut(s)	633
BstHHI	GCGC	2 cut(s)	632, 642
BstKTI	GATC	6 cut(s)	220, 241, 462, 560, 778, 959
BstMAI	GTCTC	2 cut(s)	553, 703
BstMBI	GATC	6 cut(s)	217, 238, 459, 557, 775, 956
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	8 cut(s)	501, 504, 510, 513, 601, 686, 691, 859
BstNI	CCWGG	1 cut(s)	637
BstSCI	CCNGG	1 cut(s)	635
BstUI	CGCG	2 cut(s)	415, 755
BstV1I	GCAGC	4 cut(s)	507, 636, 639, 846
BstX2I	RGATCY	2 cut(s)	775, 956
BstYI	RGATCY	2 cut(s)	775, 956
BtrI	CACGTC	1 cut(s)	468
BtsCI	GGATG	4 cut(s)	36, 155, 453, 560
BtsI	GCAGTG	1 cut(s)	649
BtsIMutI	CAGTG	2 cut(s)	649, 918
Cac8I	GCNNGC	1 cut(s)	687
CaiI	CAGNNNCTG	1 cut(s)	712
CfoI	GCGC	2 cut(s)	632, 642
Cfr10I	RCCGGY	1 cut(s)	685
Cfr13I	GGNCC	1 cut(s)	259
CseI	GACGC	1 cut(s)	321
Csp6I	GTAC	1 cut(s)	781
CviJI	RGCY	9 cut(s)	19, 107, 482, 516, 573, 680, 694, 750, 914
CviKI_1	RGCY	9 cut(s)	19, 107, 482, 516, 573, 680, 694, 750, 914
CviQI	GTAC	1 cut(s)	781
DdeI	CTNAG	2 cut(s)	103, 921
DpnI	GATC	6 cut(s)	219, 240, 461, 559, 777, 958
DpnII	GATC	6 cut(s)	217, 238, 459, 557, 775, 956
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
EciI	GGCGGA	2 cut(s)	322, 373
Eco47I	GGWCC	1 cut(s)	259
Eco72I	CACGTG	1 cut(s)	280
Eco88I	CYCGRG	1 cut(s)	30
EcoRI	GAATTC	1 cut(s)	880
EcoRII	CCWGG	1 cut(s)	635
FaiI	YATR	3 cut(s)	246, 389, 897
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FaqI	GGGAC	2 cut(s)	80, 272
FauI	CCCGC	1 cut(s)	658
FblI	GTMKAC	1 cut(s)	294
FokI	GGATG	4 cut(s)	23, 142, 440, 547
FspBI	CTAG	1 cut(s)	545
GlaI	GCGC	2 cut(s)	631, 641
GsuI	CTGGAG	2 cut(s)	550, 869
HaeII	RGCGCY	1 cut(s)	633
HapII	CCGG	4 cut(s)	457, 483, 555, 686
HgaI	GACGC	1 cut(s)	321
HhaI	GCGC	2 cut(s)	632, 642
Hin6I	GCGC	2 cut(s)	630, 640
HinP1I	GCGC	2 cut(s)	630, 640
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	2 cut(s)	571, 912
HinfI	GANTC	7 cut(s)	24, 33, 227, 344, 420, 448, 584
HpaII	CCGG	4 cut(s)	457, 483, 555, 686
HphI	GGTGA	1 cut(s)	772
Hpy166II	GTNNAC	3 cut(s)	295, 424, 579
Hpy188I	TCNGA	5 cut(s)	23, 211, 287, 708, 772
Hpy188III	TCNNGA	4 cut(s)	30, 457, 567, 885
Hpy8I	GTNNAC	3 cut(s)	295, 424, 579
Hpy99I	CGWCG	7 cut(s)	215, 218, 315, 420, 448, 524, 527
HpyAV	CCTTC	4 cut(s)	55, 108, 388, 494
HpyCH4III	ACNGT	1 cut(s)	720
HpyCH4IV	ACGT	4 cut(s)	10, 171, 279, 467
HpyCH4V	TGCA	3 cut(s)	723, 862, 953
HpyF10VI	GCNNNNNNNGC	8 cut(s)	501, 504, 510, 513, 601, 686, 691, 859
HpyF3I	CTNAG	2 cut(s)	103, 921
HpySE526I	ACGT	4 cut(s)	10, 171, 279, 467
HspAI	GCGC	2 cut(s)	630, 640
Kpn2I	TCCGGA	1 cut(s)	456
KroI	GCCGGC	1 cut(s)	685
KroNI	GCCGGC	1 cut(s)	687
Kzo9I	GATC	6 cut(s)	217, 238, 459, 557, 775, 956
LmnI	GCTCC	3 cut(s)	24, 621, 850
Lsp1109I	GCAGC	4 cut(s)	507, 636, 639, 846
LweI	GCATC	2 cut(s)	462, 901
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	4 cut(s)	10, 171, 279, 467
MalI	GATC	6 cut(s)	219, 240, 461, 559, 777, 958
MboI	GATC	6 cut(s)	217, 238, 459, 557, 775, 956
MboII	GAAGA	8 cut(s)	144, 233, 418, 445, 542, 618, 625, 775
MflI	RGATCY	2 cut(s)	775, 956
MluCI	AATT	1 cut(s)	880
MlyI	GAGTC	5 cut(s)	42, 338, 429, 457, 578
MmeI	TCCRAC	4 cut(s)	234, 265, 372, 750
MroI	TCCGGA	1 cut(s)	456
MroNI	GCCGGC	1 cut(s)	685
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	1 cut(s)	792
MspA1I	CMGCKG	1 cut(s)	595
MspI	CCGG	4 cut(s)	457, 483, 555, 686
MspR9I	CCNGG	1 cut(s)	637
MvaI	CCWGG	1 cut(s)	637
MvnI	CGCG	2 cut(s)	415, 755
MwoI	GCNNNNNNNGC	8 cut(s)	501, 504, 510, 513, 601, 686, 691, 859
NaeI	GCCGGC	1 cut(s)	687
NdeII	GATC	6 cut(s)	217, 238, 459, 557, 775, 956
NgoMIV	GCCGGC	1 cut(s)	685
NlaIV	GGNNCC	2 cut(s)	260, 777
NspV	TTCGAA	1 cut(s)	477
PcsI	WCGNNNNNNNCGW	3 cut(s)	525, 776, 881
PdiI	GCCGGC	1 cut(s)	687
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	2 cut(s)	24, 227
Pfl23II	CGTACG	1 cut(s)	780
Ple19I	CGATCG	1 cut(s)	220
PleI	GAGTC	5 cut(s)	41, 338, 428, 456, 578
PmaCI	CACGTG	1 cut(s)	280
PmlI	CACGTG	1 cut(s)	280
PpsI	GAGTC	5 cut(s)	41, 338, 428, 456, 578
Ppu21I	YACGTR	1 cut(s)	280
Psp1406I	AACGTT	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	635
PspCI	CACGTG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	635
PspLI	CGTACG	1 cut(s)	780
PspN4I	GGNNCC	2 cut(s)	260, 777
PspPI	GGNCC	1 cut(s)	259
PstNI	CAGNNNCTG	1 cut(s)	712
PsuI	RGATCY	2 cut(s)	775, 956
PvuI	CGATCG	1 cut(s)	220
RsaI	GTAC	1 cut(s)	782
RsaNI	GTAC	1 cut(s)	781
SaqAI	TTAA	1 cut(s)	792
Sau3AI	GATC	6 cut(s)	217, 238, 459, 557, 775, 956
Sau96I	GGNCC	1 cut(s)	259
SchI	GAGTC	5 cut(s)	42, 338, 429, 457, 578
ScrFI	CCNGG	1 cut(s)	637
SfaNI	GCATC	2 cut(s)	462, 901
SfuI	TTCGAA	1 cut(s)	477
SinI	GGWCC	1 cut(s)	259
Sse9I	AATT	1 cut(s)	880
SspMI	CTAG	1 cut(s)	545
StyD4I	CCNGG	1 cut(s)	635
TaaI	ACNGT	1 cut(s)	720
TaiI	ACGT	4 cut(s)	13, 174, 282, 470
TaqI	TCGA	5 cut(s)	477, 519, 698, 800, 884
TaqII	GACCGA	1 cut(s)	276
TasI	AATT	1 cut(s)	880
TauI	GCSGC	7 cut(s)	507, 510, 513, 516, 595, 635, 665
TfiI	GAWTC	2 cut(s)	24, 227
Tru1I	TTAA	1 cut(s)	792
Tru9I	TTAA	1 cut(s)	792
TscAI	CASTG	2 cut(s)	649, 925
TseI	GCWGC	4 cut(s)	495, 624, 627, 859
TspDTI	ATGAA	2 cut(s)	144, 233
TspGWI	ACGGA	1 cut(s)	768
TspRI	CASTG	2 cut(s)	649, 925
VpaK11BI	GGWCC	1 cut(s)	259
XapI	RAATTY	1 cut(s)	880
XmiI	GTMKAC	1 cut(s)	294
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.