AT2G18850

SET domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009450
Physical Location & Seq
Forward (+)
8160600 .. 8163762
3163 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G18850.2

Sequence Viewer

Length: 1632 bp
ATGGTTGGTGCTTTGAATATCATGTCAGAGACTGGTGATTTATGTGTAGAACTTCCCAAAGATGATCCCTTTTATCACCACAAAAAGAAGTTCTTGAGTTGCAAAGGTTTATGCGTAAAGGAAACATTGAACCTCAGTGGATCATTATCTCAACAACTGTTGAATGCTGCATTGGAAAAGTTGCTTCATTTTGGACGAATAGTTAATCTCGATAAGGTGGAAGTTTACTTTGGTGAGGATGCTTGCACTCCTGCAGGAATTTACAGTGTTAGAAACGAAATCTCAGCTCTCAGCTGGATCCTTTCGCTTATACCGGTTTCTTGTAAGATGCAAACACAAGTTGATACCTTTGAAGCTCTACGAGCTGCTTTAAAAGGTAGAATCAATGAGGTTGTTGGAGCTGAAAAGGAGAAAGCTAGAGTTGTTGATAGCTATAGATGCGAAAAGGAAAGCAAATTAGTAGAATGGGGTCAGGACAATGGAGTCAAAACCAAATTGCAGATAGCTCAAATTGATGGCTATGGACGAGGAGCTATAGCTAGCGAAGACTTGAAATTTGGCGATGTTGCTTTAGAGATTCCAGTCTCAAGTATCATTTCGGAGGAGTATGTGTACAACTCCGACATGTACCCAATATTGGAGACGTTTGATGGCATTACATCTGAGACAATGCTGCTCTTATGGACCATGAGGGAAAAGCATAACCTGGACTCGAAATTCAAACCATACTTTGACTCTCTGCAAGAGAATTTTTGTACCGGTTTGAGTTTTGGGGTTGATGCAATCATGGAGCTTGATGGTACATTGCTTTTAGATGAAATAATGCAAGCTAAAGAGCTTTTGCGTGAGAGGTATGATGAATTGATTCCTCTTTTATCGAACCACCGGGAAGTATTTCCACCGGAGCTCTATACATGGGAACATTACTTATGGGCTTGTGAGTTGTATTACTCAAATAGCATGCAAATCAAATTCCCAGATGGAAAGCTGAAGACTTGCTTGATTCCTGTCGCCGGTTTTCTCAACCATTCTATATACCCACACATAGTGAAATATGGAAAAGTAGACATTGAGACGAGTTCCTTGAAGTTCCCAGTCTCAAGGCCTTGCAACAAAGGGGAACAATGTTTTCTTAGCTACGGAAACTACTCTAGTTCGCATCTGTTAACATTTTACGGATTTCTACCAAAAGGGGATAACCCGTATGATGTCATTCCCTTAGATTTTGATGTCATTGATGATGAAGACATCGAGACCGAGTTTTCTTGGACAACTCACATGTTACGCGGGACTTGGCTATCGAGTAATCACAACATCTTCCACTACGGCTTGCCTACTCCATTGTTGAACTACTTGCGCAAAGCTCATGGTCTTGTTCATCATTCTGAAACAGATTTATGGAAGAACTTGGAAGTTGAGATAGGAGTACTTGAGAATCTCCAATCCACATTCGACGACATGATGCAAAATCTTGGCGATGCAGATTCTATCGACAGAGAAAACGCGGATTGGGATGTTAAACTAGCGATGGAGTTCAAAGAGCGGCAGAGAAAGATTGTCTCATCCATTCTTGATTCATGTTCTGCAGGTATCAAACTAGTTCAAGAATCCATAACTAACCCACCGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 map00310
Pfam Domains
Protein Families
Rubis-subs-bind SET

Protein Analysis

543

Amino Acids

61.72

Weight (kDa)

4.93

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 482
Acc16I TGCGCA 1 cut(s) 1358
Acc36I ACCTGC 1 cut(s) 1577
AccBSI CCGCTC 1 cut(s) 1543
AccI GTMKAC 1 cut(s) 1065
AccII CGCG 2 cut(s) 1287, 1505
AciI CCGC 3 cut(s) 1287, 1505, 1543
AclWI GGATC 4 cut(s) 59, 148, 292, 305
AcsI RAATTY 5 cut(s) 258, 554, 716, 748, 971
AcuI CTGAAG 1 cut(s) 1010
AdeI CACNNNGTG 1 cut(s) 1048
AfaI GTAC 5 cut(s) 614, 629, 757, 802, 1428
AfiI CCNNNNNNNGG 2 cut(s) 637, 1013
AflIII ACRYGT 2 cut(s) 624, 1278
AgeI ACCGGT 3 cut(s) 313, 758, 1624
AhlI ACTAGT 1 cut(s) 1597
AjnI CCWGG 1 cut(s) 705
AjuI GAANNNNNNNTTGG 4 cut(s) 155, 187, 213, 245
Alw21I GWGCWC 1 cut(s) 909
Alw26I GTCTC 8 cut(s) 23, 589, 635, 659, 1067, 1102, 1247, 1564
AlwI GGATC 4 cut(s) 59, 148, 292, 305
AlwNI CAGNNNCTG 1 cut(s) 32
AoxI GGCC 1 cut(s) 1103
ApeKI GCWGC 3 cut(s) 167, 365, 673
ApoI RAATTY 5 cut(s) 258, 554, 716, 748, 971
ArsI GACNNNNNNTTYG 2 cut(s) 539, 571
AsiGI ACCGGT 3 cut(s) 313, 758, 1624
Asp700I GAANNNNTTC 2 cut(s) 864, 894
AspLEI GCGC 1 cut(s) 1359
AspS9I GGNCC 1 cut(s) 684
AsuC2I CCSGG 1 cut(s) 887
AsuHPI GGTGA 3 cut(s) 47, 68, 245
AsuNHI GCTAGC 1 cut(s) 539
AvaII GGWCC 1 cut(s) 684
BamHI GGATCC 1 cut(s) 297
BanII GRGCYC 1 cut(s) 909
BbsI GAAGAC 3 cut(s) 552, 998, 1251
Bbv12I GWGCWC 1 cut(s) 909
BbvI GCAGC 3 cut(s) 154, 352, 660
BccI CCATC 5 cut(s) 509, 644, 791, 974, 1522
BceAI ACGGC 1 cut(s) 1342
BciT130I CCWGG 1 cut(s) 707
BcnI CCSGG 1 cut(s) 887
BcoDI GTCTC 8 cut(s) 23, 589, 635, 659, 1067, 1102, 1247, 1564
BcuI ACTAGT 1 cut(s) 1597
BfaI CTAG 5 cut(s) 417, 540, 1152, 1523, 1598
BfmI CTRYAG 4 cut(s) 252, 433, 534, 1584
BfuAI ACCTGC 1 cut(s) 1577
BisI GCNGC 4 cut(s) 168, 366, 674, 1544
BlsI GCNGC 4 cut(s) 169, 367, 675, 1545
BmcAI AGTACT 1 cut(s) 1428
Bme1390I CCNGG 2 cut(s) 707, 887
Bme18I GGWCC 1 cut(s) 684
BmgT120I GGNCC 1 cut(s) 684
BmiI GGNNCC 1 cut(s) 299
BmrFI CCNGG 2 cut(s) 707, 887
BmrI ACTGGG 1 cut(s) 1088
BmsI GCATC 7 cut(s) 229, 318, 428, 769, 1168, 1452, 1468
BmtI GCTAGC 1 cut(s) 543
BmuI ACTGGG 1 cut(s) 1088
BpiI GAAGAC 3 cut(s) 552, 998, 1251
BpuEI CTTGAG 4 cut(s) 115, 571, 1084, 1451
BpuMI CCSGG 1 cut(s) 887
BsaBI GATNNNNATC 1 cut(s) 145
BsaI GGTCTC 1 cut(s) 1247
BsaWI WCCGGW 4 cut(s) 313, 758, 901, 1624
BsaXI ACNNNNNCTCC 2 cut(s) 596, 626
Bsc4I CCNNNNNNNGG 2 cut(s) 637, 1013
Bse118I RCCGGY 4 cut(s) 313, 758, 1013, 1624
Bse1I ACTGG 3 cut(s) 37, 581, 1094
Bse3DI GCAATG 1 cut(s) 803
Bse8I GATNNNNATC 1 cut(s) 145
BseBI CCWGG 1 cut(s) 707
BseGI GGATG 3 cut(s) 244, 1519, 1562
BseJI GATNNNNATC 1 cut(s) 145
BseLI CCNNNNNNNGG 2 cut(s) 637, 1013
BseMI GCAATG 1 cut(s) 803
BseMII CTCAG 4 cut(s) 148, 297, 304, 654
BseNI ACTGG 3 cut(s) 37, 581, 1094
BseRI GAGGAG 2 cut(s) 543, 617
BseXI GCAGC 3 cut(s) 154, 352, 660
Bsh1236I CGCG 2 cut(s) 1287, 1505
BshFI GGCC 1 cut(s) 1105
BshTI ACCGGT 3 cut(s) 313, 758, 1624
BsiHKAI GWGCWC 1 cut(s) 909
BsiSI CCGG 6 cut(s) 314, 759, 886, 902, 1014, 1625
BslFI GGGAC 1 cut(s) 1303
BslI CCNNNNNNNGG 2 cut(s) 637, 1013
BsmAI GTCTC 8 cut(s) 23, 589, 635, 659, 1067, 1102, 1247, 1564
BsmBI CGTCTC 2 cut(s) 635, 1067
BsmFI GGGAC 1 cut(s) 1303
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 1 cut(s) 1105
Bso31I GGTCTC 1 cut(s) 1247
Bsp1286I GDGCHC 1 cut(s) 909
Bsp1407I TGTACA 1 cut(s) 612
Bsp143I GATC 3 cut(s) 64, 140, 297
BspACI CCGC 3 cut(s) 1287, 1505, 1543
BspANI GGCC 1 cut(s) 1105
BspCNI CTCAG 4 cut(s) 147, 296, 303, 655
BspFNI CGCG 2 cut(s) 1287, 1505
BspLI GGNNCC 1 cut(s) 299
BspMAI CTGCAG 2 cut(s) 256, 1588
BspMI ACCTGC 1 cut(s) 1577
BspOI GCTAGC 1 cut(s) 543
BspPI GGATC 4 cut(s) 59, 148, 292, 305
BspTNI GGTCTC 1 cut(s) 1247
BsrBI CCGCTC 1 cut(s) 1543
BsrDI GCAATG 1 cut(s) 803
BsrFI RCCGGY 4 cut(s) 313, 758, 1013, 1624
BsrGI TGTACA 1 cut(s) 612
BsrI ACTGG 3 cut(s) 37, 581, 1094
BssAI RCCGGY 4 cut(s) 313, 758, 1013, 1624
BssMI GATC 3 cut(s) 64, 140, 297
Bst2UI CCWGG 1 cut(s) 707
Bst4CI ACNGT 2 cut(s) 159, 266
BstAUI TGTACA 1 cut(s) 612
BstC8I GCNNGC 5 cut(s) 244, 541, 828, 962, 1331
BstDEI CTNAG 6 cut(s) 134, 283, 290, 663, 1133, 1219
BstF5I GGATG 3 cut(s) 244, 1519, 1562
BstFNI CGCG 2 cut(s) 1287, 1505
BstHHI GCGC 1 cut(s) 1359
BstKTI GATC 3 cut(s) 67, 143, 300
BstMAI GTCTC 8 cut(s) 23, 589, 635, 659, 1067, 1102, 1247, 1564
BstMBI GATC 3 cut(s) 64, 140, 297
BstMWI GCNNNNNNNGC 2 cut(s) 362, 438
BstNI CCWGG 1 cut(s) 707
BstNSI RCATGY 3 cut(s) 628, 964, 1282
BstSCI CCNGG 2 cut(s) 705, 885
BstSFI CTRYAG 4 cut(s) 252, 433, 534, 1584
BstUI CGCG 2 cut(s) 1287, 1505
BstV1I GCAGC 3 cut(s) 154, 352, 660
BstV2I GAAGAC 3 cut(s) 552, 998, 1251
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
BsuRI GGCC 1 cut(s) 1105
BtgZI GCGATG 3 cut(s) 576, 1491, 1541
BtsCI GGATG 3 cut(s) 244, 1519, 1562
BtsIMutI CAGTG 2 cut(s) 142, 271
BveI ACCTGC 1 cut(s) 1577
Cac8I GCNNGC 5 cut(s) 244, 541, 828, 962, 1331
CaiI CAGNNNCTG 1 cut(s) 32
CfoI GCGC 1 cut(s) 1359
Cfr10I RCCGGY 4 cut(s) 313, 758, 1013, 1624
Cfr13I GGNCC 1 cut(s) 684
Csp6I GTAC 5 cut(s) 613, 628, 756, 801, 1427
CspAI ACCGGT 3 cut(s) 313, 758, 1624
CviQI GTAC 5 cut(s) 613, 628, 756, 801, 1427
DdeI CTNAG 6 cut(s) 134, 283, 290, 663, 1133, 1219
DpnI GATC 3 cut(s) 66, 142, 299
DpnII GATC 3 cut(s) 64, 140, 297
DraI TTTAAA 1 cut(s) 372
DraIII CACNNNGTG 1 cut(s) 1048
DrdI GACNNNNNNGTC 1 cut(s) 482
DseDI GACNNNNNNGTC 1 cut(s) 482
Ecl136II GAGCTC 1 cut(s) 907
Eco147I AGGCCT 1 cut(s) 1105
Eco24I GRGCYC 1 cut(s) 909
Eco31I GGTCTC 1 cut(s) 1247
Eco47I GGWCC 1 cut(s) 684
Eco53kI GAGCTC 1 cut(s) 907
Eco57I CTGAAG 1 cut(s) 1010
EcoICRI GAGCTC 1 cut(s) 907
EcoRII CCWGG 1 cut(s) 705
EcoT38I GRGCYC 1 cut(s) 909
Esp3I CGTCTC 2 cut(s) 635, 1067
FalI AAGNNNNNCTT 4 cut(s) 77, 109, 983, 1015
FaqI GGGAC 1 cut(s) 1303
FauI CCCGC 1 cut(s) 1280
FblI GTMKAC 1 cut(s) 1065
Fnu4HI GCNGC 4 cut(s) 168, 366, 674, 1544
FokI GGATG 3 cut(s) 251, 1526, 1549
FriOI GRGCYC 1 cut(s) 909
Fsp4HI GCNGC 4 cut(s) 168, 366, 674, 1544
FspBI CTAG 5 cut(s) 417, 540, 1152, 1523, 1598
FspI TGCGCA 1 cut(s) 1358
GlaI GCGC 1 cut(s) 1358
GluI GCNGC 4 cut(s) 168, 366, 674, 1544
HaeIII GGCC 1 cut(s) 1105
HapII CCGG 6 cut(s) 314, 759, 886, 902, 1014, 1625
HhaI GCGC 1 cut(s) 1359
Hin6I GCGC 1 cut(s) 1357
HinP1I GCGC 1 cut(s) 1357
HincII GTYRAC 1 cut(s) 1167
HindII GTYRAC 1 cut(s) 1167
HpaI GTTAAC 1 cut(s) 1167
HpaII CCGG 6 cut(s) 314, 759, 886, 902, 1014, 1625
HphI GGTGA 3 cut(s) 47, 68, 245
Hpy166II GTNNAC 4 cut(s) 226, 613, 1066, 1167
Hpy188I TCNGA 5 cut(s) 28, 601, 622, 664, 1387
Hpy188III TCNNGA 6 cut(s) 94, 209, 473, 1252, 1571, 1604
Hpy8I GTNNAC 4 cut(s) 226, 613, 1066, 1167
Hpy99I CGWCG 1 cut(s) 1457
HpyCH4III ACNGT 2 cut(s) 159, 266
HpyCH4IV ACGT 1 cut(s) 644
HpyF10VI GCNNNNNNNGC 2 cut(s) 362, 438
HpyF3I CTNAG 6 cut(s) 134, 283, 290, 663, 1133, 1219
HpySE526I ACGT 1 cut(s) 644
HspAI GCGC 1 cut(s) 1357
KspAI GTTAAC 1 cut(s) 1167
Kzo9I GATC 3 cut(s) 64, 140, 297
LmnI GCTCC 4 cut(s) 398, 530, 790, 904
Lsp1109I GCAGC 3 cut(s) 154, 352, 660
LweI GCATC 7 cut(s) 229, 318, 428, 769, 1168, 1452, 1468
MaeI CTAG 5 cut(s) 417, 540, 1152, 1523, 1598
MaeII ACGT 1 cut(s) 644
MaeIII GTNAC 1 cut(s) 1281
MalI GATC 3 cut(s) 66, 142, 299
MbiI CCGCTC 1 cut(s) 1543
MboI GATC 3 cut(s) 64, 140, 297
MboII GAAGA 5 cut(s) 557, 1003, 1256, 1309, 1414
MflI RGATCY 1 cut(s) 297
MhlI GDGCHC 1 cut(s) 909
MluCI AATT 9 cut(s) 258, 455, 494, 510, 554, 716, 748, 860, 971
MlyI GAGTC 3 cut(s) 492, 704, 728
MmeI TCCRAC 2 cut(s) 376, 645
MnlI CCTC 8 cut(s) 143, 229, 382, 521, 595, 684, 843, 879
MroXI GAANNNNTTC 2 cut(s) 864, 894
MseI TTAA 4 cut(s) 204, 371, 1166, 1518
MspA1I CMGCKG 1 cut(s) 294
MspI CCGG 6 cut(s) 314, 759, 886, 902, 1014, 1625
MspR9I CCNGG 2 cut(s) 707, 887
Mva1269I GAATGC 1 cut(s) 169
MvaI CCWGG 1 cut(s) 707
MvnI CGCG 2 cut(s) 1287, 1505
MwoI GCNNNNNNNGC 2 cut(s) 362, 438
NciI CCSGG 1 cut(s) 887
NdeII GATC 3 cut(s) 64, 140, 297
NheI GCTAGC 1 cut(s) 539
NlaIV GGNNCC 1 cut(s) 299
NsbI TGCGCA 1 cut(s) 1358
NspI RCATGY 3 cut(s) 628, 964, 1282
PaeI GCATGC 1 cut(s) 964
PceI AGGCCT 1 cut(s) 1105
PciI ACATGT 2 cut(s) 624, 1278
PctI GAATGC 1 cut(s) 169
PdmI GAANNNNTTC 2 cut(s) 864, 894
PfeI GAWTC 8 cut(s) 381, 577, 865, 1003, 1435, 1484, 1574, 1607
PinAI ACCGGT 3 cut(s) 313, 758, 1624
PkrI GCNGC 4 cut(s) 169, 367, 675, 1545
PleI GAGTC 3 cut(s) 491, 704, 728
PpsI GAGTC 3 cut(s) 491, 704, 728
PscI ACATGT 2 cut(s) 624, 1278
Psp124BI GAGCTC 1 cut(s) 909
Psp6I CCWGG 1 cut(s) 705
PspGI CCWGG 1 cut(s) 705
PspN4I GGNNCC 1 cut(s) 299
PspPI GGNCC 1 cut(s) 684
PstI CTGCAG 2 cut(s) 256, 1588
PstNI CAGNNNCTG 1 cut(s) 32
PsuI RGATCY 1 cut(s) 297
PvuII CAGCTG 1 cut(s) 294
RsaI GTAC 5 cut(s) 614, 629, 757, 802, 1428
RsaNI GTAC 5 cut(s) 613, 628, 756, 801, 1427
SacI GAGCTC 1 cut(s) 909
SaqAI TTAA 4 cut(s) 204, 371, 1166, 1518
SatI GCNGC 4 cut(s) 168, 366, 674, 1544
Sau3AI GATC 3 cut(s) 64, 140, 297
Sau96I GGNCC 1 cut(s) 684
SbfI CCTGCAGG 1 cut(s) 256
ScaI AGTACT 1 cut(s) 1428
SchI GAGTC 3 cut(s) 492, 704, 728
ScrFI CCNGG 2 cut(s) 707, 887
SdaI CCTGCAGG 1 cut(s) 256
SduI GDGCHC 1 cut(s) 909
SfaNI GCATC 7 cut(s) 229, 318, 428, 769, 1168, 1452, 1468
SfcI CTRYAG 4 cut(s) 252, 433, 534, 1584
SinI GGWCC 1 cut(s) 684
SmlI CTYRAG 4 cut(s) 94, 586, 1099, 1430
SmoI CTYRAG 4 cut(s) 94, 586, 1099, 1430
SpeI ACTAGT 1 cut(s) 1597
SphI GCATGC 1 cut(s) 964
Sse8387I CCTGCAGG 1 cut(s) 256
Sse9I AATT 9 cut(s) 258, 455, 494, 510, 554, 716, 748, 860, 971
SseBI AGGCCT 1 cut(s) 1105
SsiI CCGC 3 cut(s) 1287, 1505, 1543
SspI AATATT 1 cut(s) 636
SspMI CTAG 5 cut(s) 417, 540, 1152, 1523, 1598
SstI GAGCTC 1 cut(s) 909
StuI AGGCCT 1 cut(s) 1105
StyD4I CCNGG 2 cut(s) 705, 885
TaaI ACNGT 2 cut(s) 159, 266
TaiI ACGT 1 cut(s) 647
TaqI TCGA 7 cut(s) 210, 713, 878, 1251, 1301, 1452, 1491
TaqII GACCGA 1 cut(s) 1271
TasI AATT 9 cut(s) 258, 455, 494, 510, 554, 716, 748, 860, 971
TatI WGTACW 2 cut(s) 612, 1426
TauI GCSGC 1 cut(s) 1546
TfiI GAWTC 8 cut(s) 381, 577, 865, 1003, 1435, 1484, 1574, 1607
Tru1I TTAA 4 cut(s) 204, 371, 1166, 1518
Tru9I TTAA 4 cut(s) 204, 371, 1166, 1518
TscAI CASTG 2 cut(s) 142, 271
TseI GCWGC 3 cut(s) 167, 365, 673
TspDTI ATGAA 6 cut(s) 176, 831, 873, 1257, 1367, 1566
TspGWI ACGGA 2 cut(s) 1155, 1191
TspRI CASTG 2 cut(s) 142, 271
VpaK11BI GGWCC 1 cut(s) 684
XapI RAATTY 5 cut(s) 258, 554, 716, 748, 971
XceI RCATGY 3 cut(s) 628, 964, 1282
XmiI GTMKAC 1 cut(s) 1065
XmnI GAANNNNTTC 2 cut(s) 864, 894
XspI CTAG 5 cut(s) 417, 540, 1152, 1523, 1598
ZrmI AGTACT 1 cut(s) 1428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.