Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009450

Physical Location & Seq

Genomic Coordinates Reverse (-)

27745710 .. 27765189

Gene Structure 19480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1255300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGTTTTGGATGCTTTATTTGTTATTTGCAGCCGTCGTCATCTTTTGATTCCATGGAGTTGGATAAAGACTGCTCAATTGTCCTGGAGCTATCTGAAAGTGACCCACTTTTTGATAAAAAGAAGAAATTGCTACAAGAGATTTAATACCAGGCAGCAAATCCATGTTAAAAGGTCTTCAGATCCTGATTGGCTGAGTACCTCTTTGGGAGTAATGCTTCAGATAGCAACAATCATAGAATCAACTGAGGTAGTCTGCATGCAAAAGAGTGTCCTGCAAGAACTACACAATGCTATTGTTGATATGATTTGTTGGTCTTCTGACGAGCACAATTCGAAGACTGCAATTGTAGAAGGCTACAACTCTGATAAACAAAAGCAACTGTTACGAAGGTGTGAGAACAGTGGTGTTAAAACAAGGTTGCAGATCGCTTATGTGGAAGGGGCTGGCAGAGGAGCCATAGCTGCAGACAATCTGAAAGTTGGAGATACTGCTCTGGAGATCCCAATGTCTTTAATAGTTTCTGAGGAGCTTGTGCAAGCTGATATGTATCATGTATTAGAGAAGTTTGAAGGCATTACTCCTCCTGAGACAATGTTGTTGTTGTGGAGCATGAAGGAGAGGCGCAATTGTGATTCAAAATACAAGATGTGCTTTGACACACTTCCTGAAGATTTTAATACTGTGTGCAGGTTGAGTTTTGGAGCCAACGTGATGATGGTTTTGGTTGGAACTGTGCTGTTGGATGAGATAACACGAGCAAAACAGATTTCGGTGCTGCTCAAAATGAATTTACTGATGGCAGCTCCATATCCAACTGGACCACTCACATGCTGTGGGGTGCATGGTTCTCAAAGAATCGTGATATTTTCTACTACGGCCTGCCCTCCCCATTGTTGGACTTCTCAAGGATATGCAACGAGGCATTGTCCCTTCAGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

315

Amino Acids

35.62

Weight (kDa)

8.52

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18850 AT2G18850
fragaria_vesca	FvH4_4g08310 FvH4_4g08310 FvH4_4g08310
malus_domestica	MD13G1255300.v1.1 MD16G1258300.v1.1 MD16G1258400.v1.1
prunus_persica	Prupe.1G086300_v2.0.a1
pyrus_communis	pycom16g22180
rosa_chinensis	RchiOBHm_Chr4g0402581
rosa_laevigata	RLG00000009066
rosa_multiflora	Rmu_co7971726.1_g000001 Rmu_sc0015071.1_g000001
rosa_roxburghii	Rroxscaffold_5G00347290
rosa_rugosa	Rorug04G0036700.1 Rorug04G0036800
rosa_samantha	Rh4AG114400 Rh4BG106500 Rh4CG120900 Rh4DG106400
rosa_wichuraiana	Rw4G009120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	681
AclWI	GGATC	2 cut(s)	176, 496
AcsI	RAATTY	1 cut(s)	790
AcuI	CTGAAG	4 cut(s)	162, 203, 690, 919
AfaI	GTAC	1 cut(s)	199
AfiI	CCNNNNNNNGG	1 cut(s)	897
AgsI	TTSAA	2 cut(s)	572, 639
AjnI	CCWGG	2 cut(s)	83, 149
AluBI	AGCT	5 cut(s)	90, 464, 532, 542, 806
AluI	AGCT	5 cut(s)	90, 464, 532, 542, 806
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	1 cut(s)	584
AlwI	GGATC	2 cut(s)	176, 496
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	1 cut(s)	879
ApeKI	GCWGC	5 cut(s)	30, 154, 464, 778, 803
ApoI	RAATTY	1 cut(s)	790
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AspLEI	GCGC	1 cut(s)	627
AspS9I	GGNCC	1 cut(s)	821
AsuII	TTCGAA	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	821
BauI	CACGAG	1 cut(s)	756
BbsI	GAAGAC	3 cut(s)	168, 309, 344
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	5 cut(s)	42, 166, 451, 765, 815
BccI	CCATC	2 cut(s)	712, 793
BceAI	ACGGC	2 cut(s)	18, 894
BciT130I	CCWGG	2 cut(s)	85, 151
BcoDI	GTCTC	1 cut(s)	584
BfmI	CTRYAG	1 cut(s)	465
BfuAI	ACCTGC	1 cut(s)	681
BisI	GCNGC	5 cut(s)	31, 155, 465, 779, 804
BlsI	GCNGC	5 cut(s)	32, 156, 466, 780, 805
Bme1390I	CCNGG	2 cut(s)	85, 151
Bme18I	GGWCC	1 cut(s)	821
BmgT120I	GGNCC	1 cut(s)	821
BmiI	GGNNCC	2 cut(s)	457, 706
BmrFI	CCNGG	2 cut(s)	85, 151
BpiI	GAAGAC	3 cut(s)	168, 309, 344
BpmI	CTGGAG	2 cut(s)	106, 518
Bpu14I	TTCGAA	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	891
BsaBI	GATNNNNATC	1 cut(s)	549
BsaJI	CCNNGG	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	696, 726
Bsc4I	CCNNNNNNNGG	1 cut(s)	897
Bse1I	ACTGG	1 cut(s)	823
Bse8I	GATNNNNATC	1 cut(s)	549
BseBI	CCWGG	2 cut(s)	85, 151
BseDI	CCNNGG	1 cut(s)	53
BseGI	GGATG	2 cut(s)	16, 751
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	1 cut(s)	897
BseMII	CTCAG	4 cut(s)	185, 237, 516, 579
BseNI	ACTGG	1 cut(s)	823
BseRI	GAGGAG	3 cut(s)	468, 542, 573
BseXI	GCAGC	5 cut(s)	42, 166, 451, 765, 815
BsgI	GTGCAG	1 cut(s)	709
BshFI	GGCC	1 cut(s)	881
BsiHKAI	GWGCWC	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	915
BslI	CCNNNNNNNGG	1 cut(s)	897
BsmAI	GTCTC	1 cut(s)	584
BsmFI	GGGAC	1 cut(s)	915
BsnI	GGCC	1 cut(s)	881
Bsp119I	TTCGAA	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	3 cut(s)	181, 426, 501
Bsp19I	CCATGG	1 cut(s)	53
BspANI	GGCC	1 cut(s)	881
BspCNI	CTCAG	4 cut(s)	186, 238, 517, 580
BspLI	GGNNCC	2 cut(s)	457, 706
BspMAI	CTGCAG	1 cut(s)	469
BspMI	ACCTGC	1 cut(s)	681
BspPI	GGATC	2 cut(s)	176, 496
BspT104I	TTCGAA	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	823
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	3 cut(s)	181, 426, 501
BssSI	CACGAG	1 cut(s)	756
BssT1I	CCWWGG	1 cut(s)	53
Bst2BI	CACGAG	1 cut(s)	756
Bst2UI	CCWGG	2 cut(s)	85, 151
Bst4CI	ACNGT	4 cut(s)	384, 404, 685, 736
BstBI	TTCGAA	1 cut(s)	335
BstC8I	GCNNGC	4 cut(s)	260, 448, 540, 883
BstDEI	CTNAG	4 cut(s)	194, 246, 525, 588
BstDSI	CCRYGG	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	16, 751
BstHHI	GCGC	1 cut(s)	627
BstKTI	GATC	3 cut(s)	184, 429, 504
BstMAI	GTCTC	1 cut(s)	584
BstMBI	GATC	3 cut(s)	181, 426, 501
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstNI	CCWGG	2 cut(s)	85, 151
BstNSI	RCATGY	2 cut(s)	262, 834
BstSCI	CCNGG	2 cut(s)	83, 149
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	5 cut(s)	42, 166, 451, 765, 815
BstV2I	GAAGAC	3 cut(s)	168, 309, 344
BstX2I	RGATCY	2 cut(s)	181, 501
BstXI	CCANNNNNNTGG	1 cut(s)	60
BstYI	RGATCY	2 cut(s)	181, 501
BsuRI	GGCC	1 cut(s)	881
BtgI	CCRYGG	1 cut(s)	53
BtsCI	GGATG	2 cut(s)	16, 751
BtsIMutI	CAGTG	1 cut(s)	409
BveI	ACCTGC	1 cut(s)	681
Cac8I	GCNNGC	4 cut(s)	260, 448, 540, 883
CaiI	CAGNNNCTG	1 cut(s)	185
CfoI	GCGC	1 cut(s)	627
Cfr13I	GGNCC	1 cut(s)	821
Csp6I	GTAC	1 cut(s)	198
CviAII	CATG	7 cut(s)	54, 164, 259, 554, 613, 831, 845
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	4 cut(s)	194, 246, 525, 588
DpnI	GATC	3 cut(s)	183, 428, 503
DpnII	GATC	3 cut(s)	181, 426, 501
Eco130I	CCWWGG	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	821
Eco57I	CTGAAG	4 cut(s)	162, 203, 690, 919
EcoRII	CCWGG	2 cut(s)	83, 149
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	7 cut(s)	57, 167, 262, 557, 616, 834, 848
FalI	AAGNNNNNCTT	2 cut(s)	638, 670
FaqI	GGGAC	1 cut(s)	915
FatI	CATG	7 cut(s)	53, 163, 258, 553, 612, 830, 844
Fnu4HI	GCNGC	5 cut(s)	31, 155, 465, 779, 804
FokI	GGATG	2 cut(s)	23, 758
Fsp4HI	GCNGC	5 cut(s)	31, 155, 465, 779, 804
GlaI	GCGC	1 cut(s)	626
GluI	GCNGC	5 cut(s)	31, 155, 465, 779, 804
GsuI	CTGGAG	2 cut(s)	106, 518
HaeIII	GGCC	1 cut(s)	881
HhaI	GCGC	1 cut(s)	627
Hin1II	CATG	7 cut(s)	57, 167, 262, 557, 616, 834, 848
Hin6I	GCGC	1 cut(s)	625
HinP1I	GCGC	1 cut(s)	625
HinfI	GANTC	4 cut(s)	49, 239, 635, 858
Hpy188I	TCNGA	7 cut(s)	96, 181, 222, 322, 367, 477, 526
Hpy188III	TCNNGA	5 cut(s)	185, 497, 587, 668, 862
Hpy99I	CGWCG	1 cut(s)	39
HpyAV	CCTTC	6 cut(s)	347, 384, 434, 566, 610, 943
HpyCH4III	ACNGT	4 cut(s)	384, 404, 685, 736
HpyCH4IV	ACGT	1 cut(s)	711
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	4 cut(s)	194, 246, 525, 588
HpySE526I	ACGT	1 cut(s)	711
Hsp92II	CATG	7 cut(s)	57, 167, 262, 557, 616, 834, 848
HspAI	GCGC	1 cut(s)	625
Kzo9I	GATC	3 cut(s)	181, 426, 501
LmnI	GCTCC	6 cut(s)	87, 455, 529, 609, 704, 811
Lsp1109I	GCAGC	5 cut(s)	42, 166, 451, 765, 815
MaeII	ACGT	1 cut(s)	711
MaeIII	GTNAC	2 cut(s)	100, 384
MalI	GATC	3 cut(s)	183, 428, 503
MboI	GATC	3 cut(s)	181, 426, 501
MboII	GAAGA	5 cut(s)	135, 168, 309, 349, 683
MfeI	CAATTG	3 cut(s)	77, 345, 628
MflI	RGATCY	2 cut(s)	181, 501
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	6 cut(s)	77, 127, 331, 345, 628, 790
MmeI	TCCRAC	6 cut(s)	41, 463, 709, 723, 839, 878
MnlI	CCTC	8 cut(s)	211, 241, 446, 520, 594, 615, 897, 915
MseI	TTAA	6 cut(s)	144, 168, 411, 515, 678, 943
MslI	CAYNNNNRTG	1 cut(s)	829
MspR9I	CCNGG	2 cut(s)	85, 151
MunI	CAATTG	3 cut(s)	77, 345, 628
MvaI	CCWGG	2 cut(s)	85, 151
MwoI	GCNNNNNNNGC	1 cut(s)	464
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	3 cut(s)	181, 426, 501
NlaIII	CATG	7 cut(s)	57, 167, 262, 557, 616, 834, 848
NlaIV	GGNNCC	2 cut(s)	457, 706
NmuCI	GTSAC	1 cut(s)	100
NspI	RCATGY	2 cut(s)	262, 834
NspV	TTCGAA	1 cut(s)	335
PaeI	GCATGC	1 cut(s)	262
PfeI	GAWTC	4 cut(s)	49, 239, 635, 858
PfoI	TCCNGGA	1 cut(s)	83
PkrI	GCNGC	5 cut(s)	32, 156, 466, 780, 805
Psp6I	CCWGG	2 cut(s)	83, 149
PspGI	CCWGG	2 cut(s)	83, 149
PspN4I	GGNNCC	2 cut(s)	457, 706
PspPI	GGNCC	1 cut(s)	821
PstI	CTGCAG	1 cut(s)	469
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	2 cut(s)	181, 501
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
RseI	CAYNNNNRTG	1 cut(s)	829
SaqAI	TTAA	6 cut(s)	144, 168, 411, 515, 678, 943
SatI	GCNGC	5 cut(s)	31, 155, 465, 779, 804
Sau3AI	GATC	3 cut(s)	181, 426, 501
Sau96I	GGNCC	1 cut(s)	821
ScrFI	CCNGG	2 cut(s)	85, 151
SduI	GDGCHC	1 cut(s)	330
SfcI	CTRYAG	1 cut(s)	465
SfuI	TTCGAA	1 cut(s)	335
SinI	GGWCC	1 cut(s)	821
SmiMI	CAYNNNNRTG	1 cut(s)	829
SmlI	CTYRAG	1 cut(s)	906
SmoI	CTYRAG	1 cut(s)	906
SphI	GCATGC	1 cut(s)	262
Sse9I	AATT	6 cut(s)	77, 127, 331, 345, 628, 790
StyD4I	CCNGG	2 cut(s)	83, 149
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	4 cut(s)	384, 404, 685, 736
TaiI	ACGT	1 cut(s)	714
TaqI	TCGA	1 cut(s)	335
TasI	AATT	6 cut(s)	77, 127, 331, 345, 628, 790
TfiI	GAWTC	4 cut(s)	49, 239, 635, 858
Tru1I	TTAA	6 cut(s)	144, 168, 411, 515, 678, 943
Tru9I	TTAA	6 cut(s)	144, 168, 411, 515, 678, 943
TscAI	CASTG	1 cut(s)	409
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	5 cut(s)	30, 154, 464, 778, 803
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	629, 803
TspRI	CASTG	1 cut(s)	409
VpaK11BI	GGWCC	1 cut(s)	821
XapI	RAATTY	1 cut(s)	790
XceI	RCATGY	2 cut(s)	262, 834
XcmI	CCANNNNNNNNNTGG	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.